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MitoVerse
3D EM Datasets with Mitochondria Annotation
For some datasets, we converted the binary segmentation into instance segmentation.
| Microscope | Dataset | Specie | Age | Tissue | Avg Shape (xyz) | Resolution | # Mitos |
|---|---|---|---|---|---|---|---|
| FIB-SEM | CellMap'25 | mixed | (219,210,217)x147 | 8x8x8 | 1580 | ||
| FIB-SEM | Conrad'23 (MitoNet) | mixed | (546,446,242)x5 | ~15x15x15 | 550 | ||
| FIB-SEM | Müller'20 (BetaSeg) | Mouse | Pancreas Islet β cell | (874,669,979)x7 | 16x16x16 | ||
| FIB-SEM | Mekuč'20 (UroCell) | Mouse | 6-8w | urinary bladder | (256,256,256)x5 | 16x16x15 | 287 |
| FIB-SEM | Lucchi'13 | Mouse | ? | Hippocampus | (512,768,82) | 10x10x10 | 70 |
| ATUM-SEM | Wei'20 (MitoEM) | Rat | Adult | Primary visual cortex (layer II/III) | (512,512,500)x64 | 8x8x30 | 8201 |
| Human | Adult | Temporal lobe (layer II) | (512,512,500)x64 | 8x8x30 | 13537 | ||
| ATUM-SEM | Casser'20 (Kasthuri++) | Mouse | Somatosensory (layer IV/V) | (699,791,80)x2 | 12x12x30 | 267 | |
| ATUM-SEM | Xiao'18 | Mouse | cortex | (2156,2104,31) | 8x8x50 | 468 | |
| ATUM-TEM | MICrONS1 | Mouse | cortex | (512,512,500)x4 | 8x8x40 | ||
| SBF-SEM | Jiang'25 | Mouse | Adult | Brainstem | (1000,1000,100)x3 | 15x15x40 | 2057 |
| SBF-SEM | Guay'21 | Human | Platelet | (667,736,65)x3 | 10x10x50 | ||
| SBF-SEM | Haberl'18 | Mouse | (256,256,15)x2 | 10x10x24 |
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