README.md

metadata

license: mit
task_categories:
  - text-classification
tags:
  - biology
  - genomics
  - long-context
configs:
  - config_name: drug_resistence_prediction
    data_files:
      - split: train
        path: drug_resistence_prediction/train.parquet
      - split: test
        path: drug_resistence_prediction/test.parquet
  - config_name: fitness_prediction_Ammonium-chloride_N
    data_files:
      - split: train
        path: fitness_prediction_Ammonium-chloride_N/train.parquet
      - split: test
        path: fitness_prediction_Ammonium-chloride_N/test.parquet
  - config_name: fitness_prediction_Cisplatin_stress
    data_files:
      - split: train
        path: fitness_prediction_Cisplatin_stress/train.parquet
      - split: test
        path: fitness_prediction_Cisplatin_stress/test.parquet
  - config_name: fitness_prediction_D-Alanine_N
    data_files:
      - split: train
        path: fitness_prediction_D-Alanine_N/train.parquet
      - split: test
        path: fitness_prediction_D-Alanine_N/test.parquet
  - config_name: fitness_prediction_L-Arabinose_C
    data_files:
      - split: train
        path: fitness_prediction_L-Arabinose_C/train.parquet
      - split: test
        path: fitness_prediction_L-Arabinose_C/test.parquet
  - config_name: fitness_prediction_L-Histidine_nutrient
    data_files:
      - split: train
        path: fitness_prediction_L-Histidine_nutrient/train.parquet
      - split: test
        path: fitness_prediction_L-Histidine_nutrient/test.parquet
  - config_name: fitness_prediction_LB-10C
    data_files:
      - split: train
        path: fitness_prediction_LB-10C/train.parquet
      - split: test
        path: fitness_prediction_LB-10C/test.parquet
  - config_name: fitness_prediction_LB-20C
    data_files:
      - split: train
        path: fitness_prediction_LB-20C/train.parquet
      - split: test
        path: fitness_prediction_LB-20C/test.parquet
  - config_name: fitness_prediction_LB-30C
    data_files:
      - split: train
        path: fitness_prediction_LB-30C/train.parquet
      - split: test
        path: fitness_prediction_LB-30C/test.parquet
  - config_name: fitness_prediction_LB-pH6
    data_files:
      - split: train
        path: fitness_prediction_LB-pH6/train.parquet
      - split: test
        path: fitness_prediction_LB-pH6/test.parquet
  - config_name: fitness_prediction_LB-pH8
    data_files:
      - split: train
        path: fitness_prediction_LB-pH8/train.parquet
      - split: test
        path: fitness_prediction_LB-pH8/test.parquet
  - config_name: fitness_prediction_Min-media-glucose_nutrient
    data_files:
      - split: train
        path: fitness_prediction_Min-media-glucose_nutrient/train.parquet
      - split: test
        path: fitness_prediction_Min-media-glucose_nutrient/test.parquet
  - config_name: fitness_prediction_Pyruvate_C
    data_files:
      - split: train
        path: fitness_prediction_Pyruvate_C/train.parquet
      - split: test
        path: fitness_prediction_Pyruvate_C/test.parquet
  - config_name: fitness_prediction_perchlorate_stress
    data_files:
      - split: train
        path: fitness_prediction_perchlorate_stress/train.parquet
      - split: test
        path: fitness_prediction_perchlorate_stress/test.parquet
  - config_name: gene_classification_bacteria
    data_files:
      - split: train
        path: gene_classification_bacteria/train.parquet
      - split: test
        path: gene_classification_bacteria/test.parquet
  - config_name: taxonomic_classification_mixed_marker
    data_files:
      - split: train
        path: taxonomic_classification_mixed_marker/train.parquet
      - split: test
        path: taxonomic_classification_mixed_marker/test.parquet
  - config_name: taxonomic_classification_random_fragment
    data_files:
      - split: train
        path: taxonomic_classification_random_fragment/train.parquet
      - split: test
        path: taxonomic_classification_random_fragment/test.parquet
  - config_name: taxonomic_classification_ssu
    data_files:
      - split: train
        path: taxonomic_classification_ssu/train.parquet
      - split: test
        path: taxonomic_classification_ssu/test.parquet

Abouts

In this repository, we present Prokaryotic Gener Tasks, a suite of biologically meaningful benchmark tasks in the prokaryotic domain.