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Refactor FieldMapperAgent to process entire documents at once, improving efficiency by eliminating page-by-page analysis. Update logging to reflect changes in document processing. Enhance AzureDIService to save extracted content to timestamped files for better traceability.

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logs/di_content/di_content_20250604_140737.txt ADDED
@@ -0,0 +1,3663 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
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <figure>
2
+
3
+ IGE-ABDEG LEAD SELECTION - STRESS TEST
4
+
5
+ Argenx - P1429-R01-v01 - 30 JUL 2020
6
+
7
+ </figure>
8
+
9
+
10
+ <figure>
11
+
12
+ RIC
13
+
14
+ biologics
15
+
16
+ </figure>
17
+
18
+
19
+ <!-- PageBreak -->
20
+
21
+
22
+ <figure>
23
+ </figure>
24
+
25
+
26
+ <!-- PageHeader="Table of contents" -->
27
+
28
+ · Project information
29
+
30
+ · Scope
31
+
32
+ · Test samples
33
+
34
+ · Method
35
+
36
+ · Results
37
+
38
+ · Conclusions
39
+
40
+
41
+ <figure>
42
+
43
+ RIC
44
+
45
+ </figure>
46
+
47
+
48
+ <!-- PageFooter="biologics" -->
49
+ <!-- PageNumber="2" -->
50
+ <!-- PageBreak -->
51
+
52
+
53
+ <figure>
54
+ </figure>
55
+
56
+
57
+ # Project information
58
+
59
+
60
+ <table>
61
+ <tr>
62
+ <td>· Project code:</td>
63
+ <td>P1429</td>
64
+ </tr>
65
+ <tr>
66
+ <td>· LNB number:</td>
67
+ <td>2020.007</td>
68
+ </tr>
69
+ <tr>
70
+ <td>· Project manager:</td>
71
+ <td>Gianni Vandenborre</td>
72
+ </tr>
73
+ <tr>
74
+ <td>· Report name:</td>
75
+ <td>P1429-R01_v01</td>
76
+ </tr>
77
+ <tr>
78
+ <td>· Report issue date:</td>
79
+ <td>30-JUL-2020</td>
80
+ </tr>
81
+ </table>
82
+
83
+
84
+ <figure>
85
+
86
+ <!-- PageFooter="RIC" -->
87
+
88
+ </figure>
89
+
90
+
91
+ <!-- PageFooter="biologics" -->
92
+ <!-- PageNumber="3" -->
93
+ <!-- PageBreak -->
94
+
95
+
96
+ <figure>
97
+ </figure>
98
+
99
+
100
+ # Scope
101
+
102
+ · Relative quantification of the PTMs present in several mAb batches that
103
+ were derived from a forced degradation study by reduced peptide map
104
+ analysis to assist argenx in the selection of a lead candidate
105
+
106
+
107
+ <figure>
108
+
109
+ RIC
110
+
111
+ </figure>
112
+
113
+
114
+ <!-- PageFooter="biologics" -->
115
+ <!-- PageNumber="4" -->
116
+ <!-- PageBreak -->
117
+
118
+
119
+ <figure>
120
+ </figure>
121
+
122
+
123
+ # Test samples
124
+
125
+
126
+ <table>
127
+ <tr>
128
+ <th>Test sample ID client</th>
129
+ <th>Batch No.</th>
130
+ <th>Volume (LL)</th>
131
+ <th>Protein concentration</th>
132
+ </tr>
133
+ <tr>
134
+ <td>18E2 HIS2 ABDEG T0</td>
135
+ <td rowspan="2">UPX 3429</td>
136
+ <td>60</td>
137
+ <td>1 mg/mL</td>
138
+ </tr>
139
+ <tr>
140
+ <td>18E2 HIS2 ABDEG T6w 37℃</td>
141
+ <td>60</td>
142
+ <td></td>
143
+ </tr>
144
+ <tr>
145
+ <td>18E2VL HIS LALA ABDEG T0</td>
146
+ <td rowspan="2">UPX 3423</td>
147
+ <td>60</td>
148
+ <td>1 mg/ml</td>
149
+ </tr>
150
+ <tr>
151
+ <td>18E2VL HIS LALA ABDEG T6w 37℃</td>
152
+ <td>60</td>
153
+ <td></td>
154
+ </tr>
155
+ <tr>
156
+ <td>Ligelizumab mAB37 T0</td>
157
+ <td rowspan="2">D27/01/2020</td>
158
+ <td>60</td>
159
+ <td>1 mg/ml</td>
160
+ </tr>
161
+ <tr>
162
+ <td>Ligelizumab mAB37 T6w 37℃</td>
163
+ <td>60</td>
164
+ <td></td>
165
+ </tr>
166
+ <tr>
167
+ <td>OmaVH15W100b_VL3 T0</td>
168
+ <td rowspan="2">Evitria 801689.2</td>
169
+ <td>60</td>
170
+ <td>1 mg/mL</td>
171
+ </tr>
172
+ <tr>
173
+ <td>OmaVH15W100b_VL3 T4w 37℃</td>
174
+ <td>60</td>
175
+ <td></td>
176
+ </tr>
177
+ <tr>
178
+ <td>OmaVH15G55H_VL3S31H T0</td>
179
+ <td rowspan="2">Evitria 801689.1</td>
180
+ <td>60</td>
181
+ <td>1 mg/mL</td>
182
+ </tr>
183
+ <tr>
184
+ <td>OmaVH15G55H_VL3S31H T4w 37℃</td>
185
+ <td>60</td>
186
+ <td></td>
187
+ </tr>
188
+ </table>
189
+
190
+
191
+ · Formulation buffer: PBS + PS20 0.02%
192
+
193
+
194
+ <figure>
195
+
196
+ RIC
197
+
198
+ </figure>
199
+
200
+
201
+ <!-- PageFooter="biologics" -->
202
+ <!-- PageNumber="5" -->
203
+ <!-- PageBreak -->
204
+
205
+
206
+ <figure>
207
+ </figure>
208
+
209
+
210
+ # Method
211
+
212
+ · Rebuffering using Amicon Ultra Centrifugal Filter (0.5 mL, MWCO 10 kDa)
213
+
214
+ · 3x conditioning step using 500 uL 100 mM Tris pH 7.5, followed by centrifugation
215
+
216
+ · 450 µL 100 mM pH 7.5 + 25 uL mAb sample (at 1 ug/uL) followed by centrifugation
217
+
218
+ · 3x buffer exchange steps using 450 µL 100 mM Tris pH 7.5 followed by centrifugation
219
+
220
+ · Invert spin of the membrane filter to collect 50 uL (so already 1/2 dilution)
221
+
222
+ · Tryptic digestion of the mAb
223
+
224
+ . 25 µg protein was used (50 uL at concentration of 0,5 µg/uL + 16.3 uL 100 mM Tris-HCI pH 7.5)
225
+
226
+ · Addition of 26.3 uL Rapigest 0.2% in 100 mM Tris-HCI pH 7.5
227
+
228
+ · Reduction using 2.4 uL 400 mM DTT in 100 mM Tris-HCI pH 7.5
229
+
230
+ · Incubation at 60℃ for 30 min
231
+
232
+ · Alkylation using 5 uL 400 mM IAA in 100 mM Tris-HCI pH 7.5
233
+
234
+ · Incubation at 37°℃ for 60 min
235
+
236
+ · Proteolysis using 5 uL trypsin (0.4 ug/uL, enzyme/protein: 1/12,5)
237
+
238
+ · Overnight Incubation at 37℃
239
+
240
+
241
+ <figure>
242
+
243
+ RIC
244
+
245
+ </figure>
246
+
247
+
248
+ <!-- PageFooter="biologics" -->
249
+ <!-- PageNumber="6" -->
250
+ <!-- PageBreak -->
251
+
252
+
253
+ <figure>
254
+ </figure>
255
+
256
+
257
+ # Method
258
+
259
+
260
+ ## · Peptide map method
261
+
262
+ · Column: AdvanceBio Peptide Map column (2.1 x 250 mm, 2.7 um particles)
263
+
264
+ · Mobile phase A: 0.05% TFA in H2O (v/v) (or 0.1% FA)
265
+
266
+ · Mobile phase B: 0.05% TFA in acetonitrile (v/v) (or 0.1% FA)
267
+
268
+ · Flow rate: 300 uL/min
269
+
270
+ · Injection volume: 15 uL
271
+
272
+ · Column temperature: 60℃
273
+
274
+ · Gradient:
275
+
276
+
277
+ <table>
278
+ <tr>
279
+ <th>Time (min)</th>
280
+ <th>%A</th>
281
+ <th>%B</th>
282
+ </tr>
283
+ <tr>
284
+ <td>0.0</td>
285
+ <td>99</td>
286
+ <td>1</td>
287
+ </tr>
288
+ <tr>
289
+ <td>2.0</td>
290
+ <td>99</td>
291
+ <td>1</td>
292
+ </tr>
293
+ <tr>
294
+ <td>35.0</td>
295
+ <td>55</td>
296
+ <td>45</td>
297
+ </tr>
298
+ <tr>
299
+ <td>36.0</td>
300
+ <td>10</td>
301
+ <td>90</td>
302
+ </tr>
303
+ <tr>
304
+ <td>42.0</td>
305
+ <td>10</td>
306
+ <td>90</td>
307
+ </tr>
308
+ <tr>
309
+ <td>43.0</td>
310
+ <td>99</td>
311
+ <td>1</td>
312
+ </tr>
313
+ <tr>
314
+ <td>56.0</td>
315
+ <td>99</td>
316
+ <td>1</td>
317
+ </tr>
318
+ <tr>
319
+ <td>28.0</td>
320
+ <td>99</td>
321
+ <td>1</td>
322
+ </tr>
323
+ </table>
324
+
325
+
326
+ <figure>
327
+
328
+ RIC
329
+
330
+ </figure>
331
+
332
+
333
+ <!-- PageFooter="biologics" -->
334
+ <!-- PageNumber="7" -->
335
+ <!-- PageBreak -->
336
+
337
+
338
+ <figure>
339
+ </figure>
340
+
341
+
342
+ # Results (UV 214 nm chromatograms TFA runs)
343
+
344
+
345
+ <figure>
346
+
347
+ x10 2 DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_18E2HIS2 ABDEG.d
348
+
349
+ 18E2HIS2 ABDEG
350
+
351
+ 1
352
+
353
+ M
354
+
355
+ 0
356
+
357
+ ×10
358
+
359
+ 10 2 DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_18E2HIS2 ABDEG_T6w.d
360
+
361
+ 18E2HIS2 ABDEG
362
+ T6w
363
+
364
+ 1
365
+
366
+ 0
367
+
368
+ M
369
+
370
+ x10 2 DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_18E2VL HIS LALA ABDEG.d
371
+
372
+ 18E2VL HIS LALA
373
+ ABDEG
374
+
375
+ 1
376
+
377
+ M
378
+
379
+ 0
380
+
381
+ ×10
382
+
383
+ 2 DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_18E2VL HIS LALA ABDEG_T6w.d
384
+
385
+ 18E2VL HIS LALA
386
+ ABDEG
387
+ T6w
388
+
389
+ 1
390
+
391
+ 0
392
+
393
+ ×10 2
394
+
395
+ DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_Ligelizumab mAb 37.d
396
+
397
+ Ligelizumab
398
+
399
+ 1
400
+
401
+ 0
402
+
403
+ x10 2
404
+
405
+ DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_Ligelizumab mAb 37_T6w.d
406
+
407
+ Ligelizumab
408
+ T6w
409
+
410
+ 1
411
+
412
+ 0
413
+
414
+ 8
415
+
416
+ 1
417
+
418
+ 2
419
+
420
+ 3
421
+
422
+ 4
423
+
424
+ 5
425
+
426
+ 6
427
+
428
+ 7
429
+
430
+ 8
431
+
432
+ 9
433
+
434
+ 10
435
+
436
+ 11
437
+
438
+ 12
439
+
440
+ 13
441
+
442
+ 14
443
+
444
+ 15
445
+
446
+ 16
447
+
448
+ 17
449
+
450
+ 18
451
+
452
+ 19
453
+
454
+ 20
455
+
456
+ 21
457
+
458
+ 22
459
+
460
+ 23
461
+
462
+ 24
463
+
464
+ 25
465
+
466
+ 26
467
+
468
+ 27
469
+
470
+ 28
471
+
472
+ 29
473
+
474
+ 30
475
+
476
+ 31
477
+
478
+ 32
479
+
480
+ 33
481
+
482
+ 34
483
+
484
+ 35
485
+
486
+ Response Units vs. Acquisition Time (min)
487
+
488
+ </figure>
489
+
490
+
491
+ <!-- PageBreak -->
492
+
493
+
494
+ <figure>
495
+ </figure>
496
+
497
+
498
+ ## Results (UV 214 nm chromatograms TFA runs)
499
+
500
+
501
+ <figure>
502
+
503
+ x10 2
504
+
505
+ DAD1 - A:Sig=214.0,8.0 Ref=360.0, 100.0 P1429_19JUN2020_PM_TFA_RAT_MS_OmaVH15G55H_VL3S31H.d
506
+
507
+ OmaVH15G55H_VL3S31H
508
+
509
+ 2.5
510
+
511
+ 2
512
+
513
+ 1.5
514
+
515
+ 1
516
+
517
+ 0.5
518
+
519
+ 0
520
+
521
+ x10 2 DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_OmaVH15G55H_VL3S31H_T4w.d
522
+
523
+ OmaVH15G55H_VL3S31H
524
+ T4w
525
+
526
+ 2.5
527
+
528
+ 2
529
+
530
+ 1.5
531
+
532
+ 1
533
+
534
+ Complete sample degradation upon storage
535
+
536
+ 0.5
537
+
538
+ 0
539
+
540
+ x10 2
541
+
542
+ DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_OmaVH15W100b_VL3.d
543
+
544
+ OmaVH15W100b_VL3
545
+
546
+ 2.5
547
+
548
+ 2
549
+
550
+ 1.5
551
+
552
+ 1
553
+
554
+ 0.5
555
+
556
+ 0
557
+
558
+ x10 2 DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_OmaVH15W100b_VL3_T4w.d
559
+
560
+ OmaVH15W100b_VL3
561
+
562
+ T4w
563
+
564
+ 2.5
565
+
566
+ 2
567
+
568
+ 1.5
569
+
570
+ 1
571
+
572
+ Complete sample degradation upon storage
573
+
574
+ 0.5
575
+
576
+ 0
577
+
578
+ 9
579
+
580
+ 1
581
+
582
+ 2
583
+
584
+ 3
585
+
586
+ 4
587
+
588
+ 5
589
+
590
+ 6
591
+
592
+ 7
593
+
594
+ 8
595
+
596
+ 9
597
+
598
+ 10
599
+
600
+ 11
601
+
602
+ 12
603
+
604
+ 13
605
+
606
+ 14
607
+
608
+ 15
609
+
610
+ 16
611
+
612
+ 17
613
+
614
+ 18
615
+
616
+ 19
617
+
618
+ 20
619
+
620
+ 21
621
+
622
+ 22
623
+
624
+ 23
625
+
626
+ 24
627
+
628
+ 25
629
+
630
+ 26
631
+
632
+ 27
633
+
634
+ 28
635
+
636
+ 29
637
+
638
+ 30
639
+
640
+ 31
641
+
642
+ 32
643
+
644
+ 33
645
+
646
+ 34
647
+
648
+ 35
649
+
650
+ Response Units vs. Acquisition Time (min)
651
+
652
+ </figure>
653
+
654
+
655
+ <!-- PageBreak -->
656
+
657
+
658
+ <figure>
659
+ </figure>
660
+
661
+
662
+ # Results Ligelizumab mAb 37- Identity
663
+
664
+
665
+ <table>
666
+ <tr>
667
+ <th>RT</th>
668
+ <th>Mass</th>
669
+ <th>Sequence</th>
670
+ <th>Seq Loc</th>
671
+ <th>Tgt Seq Mass</th>
672
+ <th>Diff (Bio, ppm)</th>
673
+ <th>Pred Mods</th>
674
+ </tr>
675
+ <tr>
676
+ <td>22.08</td>
677
+ <td>1954.0192</td>
678
+ <td>QVQLVQSGAEVMKPGSSVK</td>
679
+ <td>HC(001-019)</td>
680
+ <td>1954.0194</td>
681
+ <td>-0.09</td>
682
+ <td>pyroGlu</td>
683
+ </tr>
684
+ <tr>
685
+ <td>5.72</td>
686
+ <td>492.2353</td>
687
+ <td>VSCK</td>
688
+ <td>HC(020-023)</td>
689
+ <td>492.2366</td>
690
+ <td>-2.69</td>
691
+ <td></td>
692
+ </tr>
693
+ <tr>
694
+ <td>27.24</td>
695
+ <td>1900.8885</td>
696
+ <td>ASGYTFSWYHLEWVR</td>
697
+ <td>HC(024-038)</td>
698
+ <td>1900.8897</td>
699
+ <td>-0.6</td>
700
+ <td></td>
701
+ </tr>
702
+ <tr>
703
+ <td>25.13</td>
704
+ <td>2791.2548</td>
705
+ <td>QAPGHGLEWMGEIDPGTFTTNYNEK</td>
706
+ <td>HC(039-063)</td>
707
+ <td>2791.2548</td>
708
+ <td>-0.01</td>
709
+ <td></td>
710
+ </tr>
711
+ <tr>
712
+ <td>8.34</td>
713
+ <td>293.1737</td>
714
+ <td>FK</td>
715
+ <td>HC(064-065)</td>
716
+ <td>293.1739</td>
717
+ <td>-0.98</td>
718
+ <td></td>
719
+ </tr>
720
+ <tr>
721
+ <td>2.01</td>
722
+ <td>245.1483</td>
723
+ <td>AR</td>
724
+ <td>HC(066-067)</td>
725
+ <td>245.1488</td>
726
+ <td>-2.18</td>
727
+ <td></td>
728
+ </tr>
729
+ <tr>
730
+ <td>24.88</td>
731
+ <td>2180.0311</td>
732
+ <td>VTFTADTSTSTAYMELSSLR</td>
733
+ <td>HC(068-087)</td>
734
+ <td>2180.0307</td>
735
+ <td>0.16</td>
736
+ <td></td>
737
+ </tr>
738
+ <tr>
739
+ <td>15.70</td>
740
+ <td>1333.5591</td>
741
+ <td>SEDTAVYYCAR</td>
742
+ <td>HC(088-098)</td>
743
+ <td>1333.5609</td>
744
+ <td>-1.36</td>
745
+ <td></td>
746
+ </tr>
747
+ <tr>
748
+ <td>24.80</td>
749
+ <td>3224.4449</td>
750
+ <td>FSHFSGSNHDYFDYWGQGTLVTVSSASTK</td>
751
+ <td>HC(099-127)</td>
752
+ <td>3224.4476</td>
753
+ <td>-0.82</td>
754
+ <td></td>
755
+ </tr>
756
+ <tr>
757
+ <td>22.47</td>
758
+ <td>1185.6394</td>
759
+ <td>GPSVFPLAPSSK</td>
760
+ <td>HC(128-139)</td>
761
+ <td>1185.6394</td>
762
+ <td>-0.02</td>
763
+ <td></td>
764
+ </tr>
765
+ <tr>
766
+ <td>20.35</td>
767
+ <td>1320.6699</td>
768
+ <td>STSGGTAALGCLVK</td>
769
+ <td>HC(140-153)</td>
770
+ <td>1320.6708</td>
771
+ <td>-0.63</td>
772
+ <td></td>
773
+ </tr>
774
+ <tr>
775
+ <td>31.68</td>
776
+ <td>8014.9553</td>
777
+ <td>STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK</td>
778
+ <td>HC(140-216)</td>
779
+ <td>8014.9674</td>
780
+ <td>-1.5</td>
781
+ <td></td>
782
+ </tr>
783
+ <tr>
784
+ <td>30.99</td>
785
+ <td>6712.3060</td>
786
+ <td>DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK</td>
787
+ <td>HC(154-216)</td>
788
+ <td>6712.3072</td>
789
+ <td>-0.18</td>
790
+ <td></td>
791
+ </tr>
792
+ <tr>
793
+ <td>3.77</td>
794
+ <td>360.2002</td>
795
+ <td>VDK</td>
796
+ <td>HC(217-219)</td>
797
+ <td>360.2009</td>
798
+ <td>-1.87</td>
799
+ <td></td>
800
+ </tr>
801
+ <tr>
802
+ <td>3.06</td>
803
+ <td>488.2955</td>
804
+ <td>VDKK</td>
805
+ <td>HC(217-220)</td>
806
+ <td>488.2959</td>
807
+ <td>-0.65</td>
808
+ <td></td>
809
+ </tr>
810
+ <tr>
811
+ <td>8.41</td>
812
+ <td>599.3643</td>
813
+ <td>KVEPK</td>
814
+ <td>HC(220-224)</td>
815
+ <td>599.3643</td>
816
+ <td>-0.02</td>
817
+ <td></td>
818
+ </tr>
819
+ <tr>
820
+ <td>7.89</td>
821
+ <td>471.2683</td>
822
+ <td>VEPK</td>
823
+ <td>HC(221-224)</td>
824
+ <td>471.2693</td>
825
+ <td>-2.08</td>
826
+ <td></td>
827
+ </tr>
828
+ <tr>
829
+ <td>2.05</td>
830
+ <td>508.1940</td>
831
+ <td>SCDK</td>
832
+ <td>HC(225-228)</td>
833
+ <td>508.1952</td>
834
+ <td>-2.27</td>
835
+ <td></td>
836
+ </tr>
837
+ <tr>
838
+ <td>27.42</td>
839
+ <td>3333.6280</td>
840
+ <td>SCDKTHTCPPCPAPELLGGPSVFLFPPKPK</td>
841
+ <td>HC(225-254)</td>
842
+ <td>3333.6349</td>
843
+ <td>-2.07</td>
844
+ <td></td>
845
+ </tr>
846
+ <tr>
847
+ <td>28.13</td>
848
+ <td>2843.4478</td>
849
+ <td>THTCPPCPAPELLGGPSVFLFPPKPK</td>
850
+ <td>HC(229-254)</td>
851
+ <td>2843.4503</td>
852
+ <td>-0.87</td>
853
+ <td></td>
854
+ </tr>
855
+ <tr>
856
+ <td>17.74</td>
857
+ <td>880.4646</td>
858
+ <td>DTLYITR</td>
859
+ <td>HC(255-261)</td>
860
+ <td>880.4654</td>
861
+ <td>-1.01</td>
862
+ <td></td>
863
+ </tr>
864
+ <tr>
865
+ <td>22.01</td>
866
+ <td>2166.0153</td>
867
+ <td>EPEVTCVVVDVSHEDPEVK</td>
868
+ <td>HC(262-280)</td>
869
+ <td>2166.0151</td>
870
+ <td>0.1</td>
871
+ <td></td>
872
+ </tr>
873
+ <tr>
874
+ <td>22.33</td>
875
+ <td>1676.7946</td>
876
+ <td>FNWYVDGVEVHNAK</td>
877
+ <td>HC(281-294)</td>
878
+ <td>1676.7947</td>
879
+ <td>-0.08</td>
880
+ <td></td>
881
+ </tr>
882
+ <tr>
883
+ <td>4.62</td>
884
+ <td>500.3064</td>
885
+ <td>TKPR</td>
886
+ <td>HC(295-298)</td>
887
+ <td>500.3071</td>
888
+ <td>-1.34</td>
889
+ <td></td>
890
+ </tr>
891
+ <tr>
892
+ <td>11.17</td>
893
+ <td>2633.0333</td>
894
+ <td>EEQYNSTYR</td>
895
+ <td>HC(299-307)</td>
896
+ <td>2633.0386</td>
897
+ <td>-2.04</td>
898
+ <td>G0F</td>
899
+ </tr>
900
+ <tr>
901
+ <td>28.69</td>
902
+ <td>1806.9974</td>
903
+ <td>VVSVLTVLHQDWLNGK</td>
904
+ <td>HC(308-323)</td>
905
+ <td>1806.9992</td>
906
+ <td>-0.99</td>
907
+ <td></td>
908
+ </tr>
909
+ <tr>
910
+ <td>27.74</td>
911
+ <td>2227.1996</td>
912
+ <td>VVSVLTVLHQDWLNGKEYK</td>
913
+ <td>HC(308-326)</td>
914
+ <td>2227.2001</td>
915
+ <td>-0.24</td>
916
+ <td></td>
917
+ </tr>
918
+ <tr>
919
+ <td>6.58</td>
920
+ <td>438.2106</td>
921
+ <td>EYK</td>
922
+ <td>HC(324-326)</td>
923
+ <td>438.2115</td>
924
+ <td>-1.96</td>
925
+ <td></td>
926
+ </tr>
927
+ <tr>
928
+ <td>1.98</td>
929
+ <td>306.1355</td>
930
+ <td>CK</td>
931
+ <td>HC(327-328)</td>
932
+ <td>306.1362</td>
933
+ <td>-2.24</td>
934
+ <td></td>
935
+ </tr>
936
+ <tr>
937
+ <td>3.17</td>
938
+ <td>446.2480</td>
939
+ <td>VSNK</td>
940
+ <td>HC(329-332)</td>
941
+ <td>446.2489</td>
942
+ <td>-1.93</td>
943
+ <td></td>
944
+ </tr>
945
+ <tr>
946
+ <td>17.99</td>
947
+ <td>837.4955</td>
948
+ <td>ALPAPIEK</td>
949
+ <td>HC(333-340)</td>
950
+ <td>837.4960</td>
951
+ <td>-0.59</td>
952
+ <td></td>
953
+ </tr>
954
+ <tr>
955
+ <td>8.03</td>
956
+ <td>447.2685</td>
957
+ <td>TISK</td>
958
+ <td>HC(341-344)</td>
959
+ <td>447.2693</td>
960
+ <td>-1.69</td>
961
+ <td></td>
962
+ </tr>
963
+ <tr>
964
+ <td>6.37</td>
965
+ <td>655.3768</td>
966
+ <td>AKGQPR</td>
967
+ <td>HC(345-350)</td>
968
+ <td>655.3766</td>
969
+ <td>0.34</td>
970
+ <td></td>
971
+ </tr>
972
+ </table>
973
+
974
+
975
+ <figure>
976
+
977
+ RIC
978
+
979
+ </figure>
980
+
981
+
982
+ <!-- PageFooter="biologics" -->
983
+ <!-- PageNumber="10" -->
984
+ <!-- PageBreak -->
985
+
986
+
987
+ <figure>
988
+ </figure>
989
+
990
+
991
+ # Results Ligelizumab mAb 37- Identity
992
+
993
+
994
+ <table>
995
+ <tr>
996
+ <th>RT</th>
997
+ <th>Mass</th>
998
+ <th>Sequence</th>
999
+ <th>Seq Loc</th>
1000
+ <th>Tgt Seq Mass</th>
1001
+ <th>Diff (Bio, ppm)</th>
1002
+ <th>Pred Mods</th>
1003
+ </tr>
1004
+ <tr>
1005
+ <td>5.33</td>
1006
+ <td>456.2435</td>
1007
+ <td>GQPR</td>
1008
+ <td>HC(347-350)</td>
1009
+ <td>456.2445</td>
1010
+ <td>-2.18</td>
1011
+ <td></td>
1012
+ </tr>
1013
+ <tr>
1014
+ <td>18.59</td>
1015
+ <td>1285.6662</td>
1016
+ <td>EPQVYTLPPSR</td>
1017
+ <td>HC(351-361)</td>
1018
+ <td>1285.6667</td>
1019
+ <td>-0.32</td>
1020
+ <td></td>
1021
+ </tr>
1022
+ <tr>
1023
+ <td>19.68</td>
1024
+ <td>1871.9613</td>
1025
+ <td>EPQVYTLPPSRDELTK</td>
1026
+ <td>HC(351-366)</td>
1027
+ <td>1871.9629</td>
1028
+ <td>-0.85</td>
1029
+ <td></td>
1030
+ </tr>
1031
+ <tr>
1032
+ <td>10.34</td>
1033
+ <td>604.3060</td>
1034
+ <td>DELTK</td>
1035
+ <td>HC(362-366)</td>
1036
+ <td>604.3068</td>
1037
+ <td>-1.39</td>
1038
+ <td></td>
1039
+ </tr>
1040
+ <tr>
1041
+ <td>21.70</td>
1042
+ <td>1160.6224</td>
1043
+ <td>NQVSLTCLVK</td>
1044
+ <td>HC(367-376)</td>
1045
+ <td>1160.6224</td>
1046
+ <td>0</td>
1047
+ <td></td>
1048
+ </tr>
1049
+ <tr>
1050
+ <td>24.21</td>
1051
+ <td>2543.1234</td>
1052
+ <td>GFYPSDIAVEWESNGQPENNYK</td>
1053
+ <td>HC(377-398)</td>
1054
+ <td>2543.1241</td>
1055
+ <td>-0.27</td>
1056
+ <td></td>
1057
+ </tr>
1058
+ <tr>
1059
+ <td>25.93</td>
1060
+ <td>1872.9143</td>
1061
+ <td>TTPPVLDSDGSFFLYSK</td>
1062
+ <td>HC(399-415)</td>
1063
+ <td>1872.9146</td>
1064
+ <td>-0.14</td>
1065
+ <td></td>
1066
+ </tr>
1067
+ <tr>
1068
+ <td>12.40</td>
1069
+ <td>574.3323</td>
1070
+ <td>LTVDK</td>
1071
+ <td>HC(416-420)</td>
1072
+ <td>574.3326</td>
1073
+ <td>-0.6</td>
1074
+ <td></td>
1075
+ </tr>
1076
+ <tr>
1077
+ <td>23.22</td>
1078
+ <td>2019.9295</td>
1079
+ <td>WQQGNVFSCSVMHEALK</td>
1080
+ <td>HC(423-439)</td>
1081
+ <td>2019.9295</td>
1082
+ <td>0.02</td>
1083
+ <td></td>
1084
+ </tr>
1085
+ <tr>
1086
+ <td>12.49</td>
1087
+ <td>822.4022</td>
1088
+ <td>FHYTQK</td>
1089
+ <td>HC(440-445)</td>
1090
+ <td>822.4024</td>
1091
+ <td>-0.26</td>
1092
+ <td></td>
1093
+ </tr>
1094
+ <tr>
1095
+ <td>18.19</td>
1096
+ <td>659.3484</td>
1097
+ <td>SLSLSPG</td>
1098
+ <td>HC(446-452)</td>
1099
+ <td>659.3490</td>
1100
+ <td>-0.99</td>
1101
+ <td></td>
1102
+ </tr>
1103
+ <tr>
1104
+ <td>16.86</td>
1105
+ <td>787.4437</td>
1106
+ <td>SLSLSPGK</td>
1107
+ <td>HC(446-453)</td>
1108
+ <td>787.4440</td>
1109
+ <td>-0.36</td>
1110
+ <td></td>
1111
+ </tr>
1112
+ <tr>
1113
+ <td>21.23</td>
1114
+ <td>1900.9548</td>
1115
+ <td>EIVMTQSPATLSVSPGER</td>
1116
+ <td>LC(001-018)</td>
1117
+ <td>1900.9564</td>
1118
+ <td>-0.87</td>
1119
+ <td></td>
1120
+ </tr>
1121
+ <tr>
1122
+ <td>11.12</td>
1123
+ <td>706.3424</td>
1124
+ <td>ATLSCR</td>
1125
+ <td>LC(019-024)</td>
1126
+ <td>706.3432</td>
1127
+ <td>-1.12</td>
1128
+ <td></td>
1129
+ </tr>
1130
+ <tr>
1131
+ <td>19.07</td>
1132
+ <td>2366.1878</td>
1133
+ <td>ASQSIGTNIHWYQQKPGQAPR</td>
1134
+ <td>LC(025-045)</td>
1135
+ <td>2366.1880</td>
1136
+ <td>-0.08</td>
1137
+ <td></td>
1138
+ </tr>
1139
+ <tr>
1140
+ <td>25.77</td>
1141
+ <td>1751.9464</td>
1142
+ <td>LLIYYASESISGIPAR</td>
1143
+ <td>LC(046-061)</td>
1144
+ <td>1751.9458</td>
1145
+ <td>0.34</td>
1146
+ <td></td>
1147
+ </tr>
1148
+ <tr>
1149
+ <td>30.53</td>
1150
+ <td>4601.0567</td>
1151
+ <td>FSGSGSGTEFTLTISSLQSEDFAVYYCQQSWSWPTTFGGGTK</td>
1152
+ <td>LC(062-103)</td>
1153
+ <td>4601.0646</td>
1154
+ <td>-1.72</td>
1155
+ <td></td>
1156
+ </tr>
1157
+ <tr>
1158
+ <td>12.43</td>
1159
+ <td>487.3001</td>
1160
+ <td>VEIK</td>
1161
+ <td>LC(104-107)</td>
1162
+ <td>487.3006</td>
1163
+ <td>-1.08</td>
1164
+ <td></td>
1165
+ </tr>
1166
+ <tr>
1167
+ <td>11.85</td>
1168
+ <td>643.4010</td>
1169
+ <td>VEIKR</td>
1170
+ <td>LC(104-108)</td>
1171
+ <td>643.4017</td>
1172
+ <td>-1.04</td>
1173
+ <td></td>
1174
+ </tr>
1175
+ <tr>
1176
+ <td>26.29</td>
1177
+ <td>2101.1184</td>
1178
+ <td>RTVAAPSVFIFPPSDEQLK</td>
1179
+ <td>LC(108-126)</td>
1180
+ <td>2101.1208</td>
1181
+ <td>-1.16</td>
1182
+ <td></td>
1183
+ </tr>
1184
+ <tr>
1185
+ <td>27.42</td>
1186
+ <td>1945.0183</td>
1187
+ <td>TVAAPSVFIFPPSDEQLK</td>
1188
+ <td>LC(109-126)</td>
1189
+ <td>1945.0197</td>
1190
+ <td>-0.71</td>
1191
+ <td></td>
1192
+ </tr>
1193
+ <tr>
1194
+ <td>33.07</td>
1195
+ <td>3723.8910</td>
1196
+ <td>TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPR</td>
1197
+ <td>LC(109-142)</td>
1198
+ <td>3723.8971</td>
1199
+ <td>-1.64</td>
1200
+ <td></td>
1201
+ </tr>
1202
+ <tr>
1203
+ <td>28.60</td>
1204
+ <td>1796.8863</td>
1205
+ <td>SGTASVVCLLNNFYPR</td>
1206
+ <td>LC(127-142)</td>
1207
+ <td>1796.8880</td>
1208
+ <td>-0.92</td>
1209
+ <td></td>
1210
+ </tr>
1211
+ <tr>
1212
+ <td>1.98</td>
1213
+ <td>346.1845</td>
1214
+ <td>EAK</td>
1215
+ <td>LC(143-145)</td>
1216
+ <td>346.1852</td>
1217
+ <td>-2.12</td>
1218
+ <td></td>
1219
+ </tr>
1220
+ <tr>
1221
+ <td>14.20</td>
1222
+ <td>559.3115</td>
1223
+ <td>VQWK</td>
1224
+ <td>LC(146-149)</td>
1225
+ <td>559.3118</td>
1226
+ <td>-0.58</td>
1227
+ <td></td>
1228
+ </tr>
1229
+ <tr>
1230
+ <td>13.95</td>
1231
+ <td>2134.9593</td>
1232
+ <td>VDNALQSGNSQESVTEQDSK</td>
1233
+ <td>LC(150-169)</td>
1234
+ <td>2134.9615</td>
1235
+ <td>-1.01</td>
1236
+ <td></td>
1237
+ </tr>
1238
+ <tr>
1239
+ <td>21.54</td>
1240
+ <td>3618.6975</td>
1241
+ <td>VDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSK</td>
1242
+ <td>LC(150-183)</td>
1243
+ <td>3618.7021</td>
1244
+ <td>-1.26</td>
1245
+ <td></td>
1246
+ </tr>
1247
+ <tr>
1248
+ <td>21.61</td>
1249
+ <td>1501.7507</td>
1250
+ <td>DSTYSLSSTLTLSK</td>
1251
+ <td>LC(170-183)</td>
1252
+ <td>1501.7512</td>
1253
+ <td>-0.34</td>
1254
+ <td></td>
1255
+ </tr>
1256
+ <tr>
1257
+ <td>8.49</td>
1258
+ <td>624.2752</td>
1259
+ <td>ADYEK</td>
1260
+ <td>LC(184-188)</td>
1261
+ <td>624.2755</td>
1262
+ <td>-0.47</td>
1263
+ <td></td>
1264
+ </tr>
1265
+ <tr>
1266
+ <td>17.03</td>
1267
+ <td>2140.0696</td>
1268
+ <td>HKVYACEVTHQGLSSPVTK</td>
1269
+ <td>LC(189-207)</td>
1270
+ <td>2140.0735</td>
1271
+ <td>-1.84</td>
1272
+ <td></td>
1273
+ </tr>
1274
+ <tr>
1275
+ <td>17.75</td>
1276
+ <td>1874.9187</td>
1277
+ <td>VYACEVTHQGLSSPVTK</td>
1278
+ <td>LC(191-207)</td>
1279
+ <td>1874.9197</td>
1280
+ <td>-0.5</td>
1281
+ <td></td>
1282
+ </tr>
1283
+ <tr>
1284
+ <td>10.15</td>
1285
+ <td>522.2544</td>
1286
+ <td>SFNR</td>
1287
+ <td>LC(208-211)</td>
1288
+ <td>522.2551</td>
1289
+ <td>-1.22</td>
1290
+ <td></td>
1291
+ </tr>
1292
+ <tr>
1293
+ <td>2.06</td>
1294
+ <td>364.1044</td>
1295
+ <td>GEC</td>
1296
+ <td>LC(212-214)</td>
1297
+ <td>364.1053</td>
1298
+ <td>-2.35</td>
1299
+ <td></td>
1300
+ </tr>
1301
+ </table>
1302
+
1303
+
1304
+ <figure>
1305
+ </figure>
1306
+
1307
+
1308
+ RIC
1309
+
1310
+ <!-- PageFooter="biologics" -->
1311
+ <!-- PageNumber="11" -->
1312
+ <!-- PageBreak -->
1313
+
1314
+
1315
+ <figure>
1316
+ </figure>
1317
+
1318
+
1319
+ # Results Ligelizumab mAb 37- Identity
1320
+
1321
+ \>HEAVY CHAIN: Ligelizumab mAb 37
1322
+
1323
+ QVQLVQSGAEVMKPGSSVKVSCKASGYTFSWYHLEWVRQAPGHGLEWMGEIDPGTFTTNYNEKFKARVTFTADTSTSTAYMELSSLR
1324
+ SEDTAVYYCARFSHESGSNHDYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH
1325
+ TFPAVLOSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLYITR
1326
+ EPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQ
1327
+ PREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMH
1328
+ EALKFHYTOKSLSLSPGK
1329
+
1330
+ \>LIGHT CHAIN: Ligelizumab mAb 37
1331
+
1332
+ EIVMTQSPATLSVSPGERATLSCRASOSIGTNIHWYQQKPGQAPRLLIYYASESISGIPARFSGSGSGTEFTLTISSLOSEDFAVYY
1333
+ COOSWSWPTTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYS
1334
+ LSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
1335
+
1336
+ Sequence coverage of 99.7%
1337
+
1338
+
1339
+ <figure>
1340
+
1341
+ RIC
1342
+
1343
+ </figure>
1344
+
1345
+
1346
+ <!-- PageFooter="biologics" -->
1347
+ <!-- PageNumber="12" -->
1348
+ <!-- PageBreak -->
1349
+
1350
+
1351
+ <figure>
1352
+ </figure>
1353
+
1354
+
1355
+ # Results Ligelizumab mAb 37- Modifications (oxidation)
1356
+
1357
+
1358
+ <table>
1359
+ <tr>
1360
+ <th>Sequence</th>
1361
+ <th>Seq Loc</th>
1362
+ <th>Modification</th>
1363
+ <th>Ligelizumab</th>
1364
+ <th>Ligelizumab T6w</th>
1365
+ </tr>
1366
+ <tr>
1367
+ <td rowspan="2">pyroQVQLVQSGAEVMKPGSSVK</td>
1368
+ <td rowspan="2">HC(1-19)</td>
1369
+ <td rowspan="2">Oxidation</td>
1370
+ <td rowspan="2">1.6 98.4</td>
1371
+ <td>20.3</td>
1372
+ </tr>
1373
+ <tr>
1374
+ <td>79.7</td>
1375
+ </tr>
1376
+ <tr>
1377
+ <td rowspan="2">ASGYTFSWYHLEWVR</td>
1378
+ <td rowspan="2">HC(24-38)</td>
1379
+ <td rowspan="2">Oxidation</td>
1380
+ <td rowspan="2">1.5 98.5</td>
1381
+ <td>5.5</td>
1382
+ </tr>
1383
+ <tr>
1384
+ <td>94.5</td>
1385
+ </tr>
1386
+ <tr>
1387
+ <td rowspan="2">QAPGHGLEWMGEIDPGTFTTNYNEK</td>
1388
+ <td rowspan="2">HC(36-63)</td>
1389
+ <td rowspan="2">Oxidation</td>
1390
+ <td>0.8</td>
1391
+ <td>0.7</td>
1392
+ </tr>
1393
+ <tr>
1394
+ <td>99.2</td>
1395
+ <td>99.3</td>
1396
+ </tr>
1397
+ <tr>
1398
+ <td>VTFTADTSTSTAYMELSSLR</td>
1399
+ <td>HC(68-87)</td>
1400
+ <td>Oxidation</td>
1401
+ <td>0.9 99.1</td>
1402
+ <td>1.2 98.8</td>
1403
+ </tr>
1404
+ <tr>
1405
+ <td>FSHFSGSNHDYFDYWGQGTLVTVSSASTK</td>
1406
+ <td>HC(99-127)</td>
1407
+ <td>Oxidation</td>
1408
+ <td>0.5 99.5</td>
1409
+ <td>0.7 99.3</td>
1410
+ </tr>
1411
+ <tr>
1412
+ <td>WQQGNVFSCSVMHEALK</td>
1413
+ <td>HC(423-439)</td>
1414
+ <td>Oxidation</td>
1415
+ <td>2.3 97.7</td>
1416
+ <td>10.6 89.4</td>
1417
+ </tr>
1418
+ <tr>
1419
+ <td>EIVMTQSPATLSVSPGER</td>
1420
+ <td>LC(1-18)</td>
1421
+ <td>Oxidation</td>
1422
+ <td>1.8 98.2</td>
1423
+ <td>2.2 97.8</td>
1424
+ </tr>
1425
+ </table>
1426
+
1427
+ BOLD: relevant increase upon stressing
1428
+
1429
+ Note: Only modifications > 0.5% are reported
1430
+
1431
+
1432
+ <figure>
1433
+ </figure>
1434
+
1435
+
1436
+ RIC
1437
+ biologics
1438
+
1439
+ <!-- PageNumber="13" -->
1440
+ <!-- PageBreak -->
1441
+
1442
+
1443
+ <figure>
1444
+ </figure>
1445
+
1446
+
1447
+ # Results Ligelizumab mAb 37- Modifications (deam/isoD)
1448
+
1449
+
1450
+ <table>
1451
+ <tr>
1452
+ <th>Sequence</th>
1453
+ <th>Seq Loc</th>
1454
+ <th>Modification</th>
1455
+ <th>Ligelizumab</th>
1456
+ <th>Ligelizumab T6w</th>
1457
+ </tr>
1458
+ <tr>
1459
+ <td rowspan="2">FNWYVDGVEVHNAK</td>
1460
+ <td rowspan="2">HC(281-294)</td>
1461
+ <td>IsoD</td>
1462
+ <td>0.7</td>
1463
+ <td>1.6</td>
1464
+ </tr>
1465
+ <tr>
1466
+ <td></td>
1467
+ <td>99.3</td>
1468
+ <td>98.4</td>
1469
+ </tr>
1470
+ <tr>
1471
+ <td rowspan="3">VVSVLTVLHQDWLNGK</td>
1472
+ <td rowspan="3">HC(308-323)</td>
1473
+ <td>Deam</td>
1474
+ <td>1.0</td>
1475
+ <td>1.4</td>
1476
+ </tr>
1477
+ <tr>
1478
+ <td></td>
1479
+ <td>97.4</td>
1480
+ <td>96.1</td>
1481
+ </tr>
1482
+ <tr>
1483
+ <td>Succ</td>
1484
+ <td>1.6</td>
1485
+ <td>2.5</td>
1486
+ </tr>
1487
+ <tr>
1488
+ <td rowspan="2">NQVSLTCLVK</td>
1489
+ <td rowspan="2">HC(367-376)</td>
1490
+ <td>Deam</td>
1491
+ <td>2.5</td>
1492
+ <td>3.5</td>
1493
+ </tr>
1494
+ <tr>
1495
+ <td></td>
1496
+ <td>97.5</td>
1497
+ <td>96.5</td>
1498
+ </tr>
1499
+ <tr>
1500
+ <td rowspan="2">GFYPSDIAVEWESNGQPENNYK</td>
1501
+ <td rowspan="2">HC(377-398)</td>
1502
+ <td>Deam</td>
1503
+ <td>4.4</td>
1504
+ <td>24.6</td>
1505
+ </tr>
1506
+ <tr>
1507
+ <td></td>
1508
+ <td>95.6</td>
1509
+ <td>75.4</td>
1510
+ </tr>
1511
+ <tr>
1512
+ <td>TVAAPSVFIFPPSDEQLK</td>
1513
+ <td>LC(109-126)</td>
1514
+ <td>IsoD</td>
1515
+ <td>0.0 100.0</td>
1516
+ <td>0.9 99.1</td>
1517
+ </tr>
1518
+ <tr>
1519
+ <td></td>
1520
+ <td rowspan="2">LC(127-142)</td>
1521
+ <td>Deam</td>
1522
+ <td>0.9</td>
1523
+ <td>0.8</td>
1524
+ </tr>
1525
+ <tr>
1526
+ <td>SGTASVVCLLNNFYPR</td>
1527
+ <td></td>
1528
+ <td>99.1</td>
1529
+ <td>99.2</td>
1530
+ </tr>
1531
+ <tr>
1532
+ <td>VDNALQSGNSQESVTEQDSK</td>
1533
+ <td>LC(150-169)</td>
1534
+ <td>IsoD</td>
1535
+ <td>0.5 99.5</td>
1536
+ <td>1.0 99.0</td>
1537
+ </tr>
1538
+ </table>
1539
+
1540
+ BOLD: relevant increase upon stressing
1541
+
1542
+ Note: Only modifications > 0.5% are reported
1543
+
1544
+
1545
+ <figure>
1546
+ </figure>
1547
+
1548
+
1549
+ RIC
1550
+ biologics
1551
+
1552
+ <!-- PageNumber="14" -->
1553
+ <!-- PageBreak -->
1554
+
1555
+
1556
+ <figure>
1557
+ </figure>
1558
+
1559
+
1560
+ # Results Ligelizumab mAb 37 - Modifications (pyroE)
1561
+
1562
+
1563
+ <table>
1564
+ <tr>
1565
+ <th>Sequence</th>
1566
+ <th>Seq Loc</th>
1567
+ <th>Modification</th>
1568
+ <th>Ligelizumab</th>
1569
+ <th>Ligelizumab T6w</th>
1570
+ </tr>
1571
+ <tr>
1572
+ <td>QVQLVQSGAEVMKPGSSVK</td>
1573
+ <td>HC(1-19)</td>
1574
+ <td>PyroE</td>
1575
+ <td>100.0 0.0</td>
1576
+ <td>100.0 0.0</td>
1577
+ </tr>
1578
+ <tr>
1579
+ <td>EIVMTQSPATLSVSPGER</td>
1580
+ <td>LC(1-18)</td>
1581
+ <td>PyroE</td>
1582
+ <td>1.1 98.9</td>
1583
+ <td>2.0 98.0</td>
1584
+ </tr>
1585
+ </table>
1586
+
1587
+
1588
+ <figure>
1589
+
1590
+ RIC
1591
+
1592
+ </figure>
1593
+
1594
+
1595
+ <!-- PageFooter="biologics" -->
1596
+ <!-- PageNumber="15" -->
1597
+ <!-- PageBreak -->
1598
+
1599
+
1600
+ <figure>
1601
+ </figure>
1602
+
1603
+
1604
+ ## Results Ligelizumab mAB 37- Modifications
1605
+
1606
+ \>HEAVY CHAIN: Ligelizumab
1607
+
1608
+ QVQLVQSGAEVMKPGSSVKVSCKASGYTFSWYHLEWVRQAPGHGLEWMGEIDPGTFTTNYNEKFKARVTFTADTSTSTAYMELSSL
1609
+ RSEDTAVYYCARFSHFSGSNHDYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV
1610
+ HTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLYIT
1611
+ REPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKG
1612
+ QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV
1613
+ MHEALKFHYTOKSLSLSPGK
1614
+
1615
+ \>LIGHT CHAIN: Ligelizumab
1616
+
1617
+ EIVMTQSPATLSVSPGERATLSCRASOSIGTNIHWYQQKPGQAPRLLIYYASESISGIPARFSGSGSGTEFTLTISSLOSEDFAVYY
1618
+ COOSWSWPTTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYS
1619
+ LSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
1620
+
1621
+
1622
+ <figure>
1623
+
1624
+ RIC
1625
+
1626
+ </figure>
1627
+
1628
+
1629
+ <!-- PageFooter="biologics" -->
1630
+
1631
+ RED: relevant increase upon stressing
1632
+
1633
+ <!-- PageNumber="16" -->
1634
+ <!-- PageBreak -->
1635
+
1636
+
1637
+ <figure>
1638
+ </figure>
1639
+
1640
+
1641
+ ## Results 18E2 HIS2 ABDEG - Identity
1642
+
1643
+
1644
+ <table>
1645
+ <tr>
1646
+ <th>RT</th>
1647
+ <th>Mass</th>
1648
+ <th>Sequence</th>
1649
+ <th>Seq Loc</th>
1650
+ <th>Tgt Seq Mass</th>
1651
+ <th>Diff (Bio, ppm)</th>
1652
+ <th>Pred Mods</th>
1653
+ </tr>
1654
+ <tr>
1655
+ <td>23.52</td>
1656
+ <td>1895.0106</td>
1657
+ <td>EVQLLESGGGLVQPGGSLR</td>
1658
+ <td>HC(001-019)</td>
1659
+ <td>1895.0113</td>
1660
+ <td>-0.33</td>
1661
+ <td></td>
1662
+ </tr>
1663
+ <tr>
1664
+ <td>29.08</td>
1665
+ <td>2205.0150</td>
1666
+ <td>LSCAASGFTFSSYVMHWVR</td>
1667
+ <td>HC(020-038)</td>
1668
+ <td>2205.0136</td>
1669
+ <td>0.67</td>
1670
+ <td></td>
1671
+ </tr>
1672
+ <tr>
1673
+ <td>31.91</td>
1674
+ <td>5241.4455</td>
1675
+ <td>LSCAASGFTFSSYVMHWVRQAPGKGLEWVSSIYHDGSHTYYADFVK</td>
1676
+ <td>HC(020-065)</td>
1677
+ <td>5241.4542</td>
1678
+ <td>-1.66</td>
1679
+ <td></td>
1680
+ </tr>
1681
+ <tr>
1682
+ <td>6.07</td>
1683
+ <td>499.2752</td>
1684
+ <td>QAPGK</td>
1685
+ <td>HC(039-043)</td>
1686
+ <td>499.2755</td>
1687
+ <td>-0.47</td>
1688
+ <td></td>
1689
+ </tr>
1690
+ <tr>
1691
+ <td>25.58</td>
1692
+ <td>2573.1878</td>
1693
+ <td>GLEWVSSIYHDGSHTYYADFVK</td>
1694
+ <td>HC(044-065)</td>
1695
+ <td>2573.1863</td>
1696
+ <td>0.56</td>
1697
+ <td></td>
1698
+ </tr>
1699
+ <tr>
1700
+ <td>15.94</td>
1701
+ <td>835.4666</td>
1702
+ <td>GRFTISR</td>
1703
+ <td>HC(066-072)</td>
1704
+ <td>835.4664</td>
1705
+ <td>0.2</td>
1706
+ <td></td>
1707
+ </tr>
1708
+ <tr>
1709
+ <td>16.06</td>
1710
+ <td>622.3440</td>
1711
+ <td>FTISR</td>
1712
+ <td>HC(068-072)</td>
1713
+ <td>622.3439</td>
1714
+ <td>0.21</td>
1715
+ <td></td>
1716
+ </tr>
1717
+ <tr>
1718
+ <td>2.31</td>
1719
+ <td>462.2077</td>
1720
+ <td>DNSK</td>
1721
+ <td>HC(073-076)</td>
1722
+ <td>462.2074</td>
1723
+ <td>0.47</td>
1724
+ <td></td>
1725
+ </tr>
1726
+ <tr>
1727
+ <td>22.53</td>
1728
+ <td>1351.6908</td>
1729
+ <td>NTLYLQMNSLR</td>
1730
+ <td>HC(077-087)</td>
1731
+ <td>1351.6918</td>
1732
+ <td>-0.78</td>
1733
+ <td></td>
1734
+ </tr>
1735
+ <tr>
1736
+ <td>15.52</td>
1737
+ <td>1289.5593</td>
1738
+ <td>AEDTAVYYCAK</td>
1739
+ <td>HC(088-098)</td>
1740
+ <td>1289.5598</td>
1741
+ <td>-0.41</td>
1742
+ <td></td>
1743
+ </tr>
1744
+ <tr>
1745
+ <td>28.16</td>
1746
+ <td>3400.5399</td>
1747
+ <td>GTSYSGSYYYTDPFFGSWGQGTLVTVSSASTK</td>
1748
+ <td>HC(099-130)</td>
1749
+ <td>3400.5412</td>
1750
+ <td>-0.39</td>
1751
+ <td></td>
1752
+ </tr>
1753
+ <tr>
1754
+ <td>22.49</td>
1755
+ <td>1185.6381</td>
1756
+ <td>GPSVFPLAPSSK</td>
1757
+ <td>HC(131-142)</td>
1758
+ <td>1185.6394</td>
1759
+ <td>-1.08</td>
1760
+ <td></td>
1761
+ </tr>
1762
+ <tr>
1763
+ <td>20.36</td>
1764
+ <td>1320.6693</td>
1765
+ <td>STSGGTAALGCLVK</td>
1766
+ <td>HC(143-156)</td>
1767
+ <td>1320.6708</td>
1768
+ <td>-1.13</td>
1769
+ <td></td>
1770
+ </tr>
1771
+ <tr>
1772
+ <td>31.67</td>
1773
+ <td>8014.9598</td>
1774
+ <td>STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK</td>
1775
+ <td>HC(143-219)</td>
1776
+ <td>8014.9674</td>
1777
+ <td>-0.95</td>
1778
+ <td></td>
1779
+ </tr>
1780
+ <tr>
1781
+ <td>30.97</td>
1782
+ <td>6712.2931</td>
1783
+ <td>DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK</td>
1784
+ <td>HC(157-219)</td>
1785
+ <td>6712.3072</td>
1786
+ <td>-2.1</td>
1787
+ <td></td>
1788
+ </tr>
1789
+ <tr>
1790
+ <td>3.07</td>
1791
+ <td>488.2955</td>
1792
+ <td>VDKK</td>
1793
+ <td>HC(220-223)</td>
1794
+ <td>488.2959</td>
1795
+ <td>-0.72</td>
1796
+ <td></td>
1797
+ </tr>
1798
+ <tr>
1799
+ <td>8.41</td>
1800
+ <td>599.3646</td>
1801
+ <td>KVEPK</td>
1802
+ <td>HC(223-227)</td>
1803
+ <td>599.3643</td>
1804
+ <td>0.52</td>
1805
+ <td></td>
1806
+ </tr>
1807
+ <tr>
1808
+ <td>7.89</td>
1809
+ <td>471.2689</td>
1810
+ <td>VEPK</td>
1811
+ <td>HC(224-227)</td>
1812
+ <td>471.2693</td>
1813
+ <td>-0.94</td>
1814
+ <td></td>
1815
+ </tr>
1816
+ <tr>
1817
+ <td>2.06</td>
1818
+ <td>508.1946</td>
1819
+ <td>SCDK</td>
1820
+ <td>HC(228-231)</td>
1821
+ <td>508.1952</td>
1822
+ <td>-1.19</td>
1823
+ <td></td>
1824
+ </tr>
1825
+ <tr>
1826
+ <td>27.38</td>
1827
+ <td>3333.6341</td>
1828
+ <td>SCDKTHTCPPCPAPELLGGPSVFLFPPKPK</td>
1829
+ <td>HC(228-257)</td>
1830
+ <td>3333.6349</td>
1831
+ <td>-0.22</td>
1832
+ <td></td>
1833
+ </tr>
1834
+ <tr>
1835
+ <td>28.10</td>
1836
+ <td>2843.4509</td>
1837
+ <td>THTCPPCPAPELLGGPSVFLFPPKPK</td>
1838
+ <td>HC(232-257)</td>
1839
+ <td>2843.4503</td>
1840
+ <td>0.21</td>
1841
+ <td></td>
1842
+ </tr>
1843
+ <tr>
1844
+ <td>17.76</td>
1845
+ <td>880.4659</td>
1846
+ <td>DTLYITR</td>
1847
+ <td>HC(258-264)</td>
1848
+ <td>880.4654</td>
1849
+ <td>0.54</td>
1850
+ <td></td>
1851
+ </tr>
1852
+ <tr>
1853
+ <td>22.02</td>
1854
+ <td>2166.0145</td>
1855
+ <td>EPEVTCVVVDVSHEDPEVK</td>
1856
+ <td>HC(265-283)</td>
1857
+ <td>2166.0151</td>
1858
+ <td>-0.25</td>
1859
+ <td></td>
1860
+ </tr>
1861
+ <tr>
1862
+ <td>22.34</td>
1863
+ <td>1676.7950</td>
1864
+ <td>FNWYVDGVEVHNAK</td>
1865
+ <td>HC(284-297)</td>
1866
+ <td>1676.7947</td>
1867
+ <td>0.16</td>
1868
+ <td></td>
1869
+ </tr>
1870
+ <tr>
1871
+ <td>4.63</td>
1872
+ <td>500.3070</td>
1873
+ <td>TKPR</td>
1874
+ <td>HC(298-301)</td>
1875
+ <td>500.3071</td>
1876
+ <td>-0.23</td>
1877
+ <td></td>
1878
+ </tr>
1879
+ <tr>
1880
+ <td>11.96</td>
1881
+ <td>1188.5050</td>
1882
+ <td>EEQYNSTYR</td>
1883
+ <td>HC(302-310)</td>
1884
+ <td>1188.5047</td>
1885
+ <td>0.24</td>
1886
+ <td></td>
1887
+ </tr>
1888
+ <tr>
1889
+ <td>11.18</td>
1890
+ <td>2633.0396</td>
1891
+ <td>EEQYNSTYR</td>
1892
+ <td>HC(302-310)</td>
1893
+ <td>2633.0386</td>
1894
+ <td>0.38</td>
1895
+ <td>G0F</td>
1896
+ </tr>
1897
+ <tr>
1898
+ <td>28.68</td>
1899
+ <td>1806.9994</td>
1900
+ <td>VVSVLTVLHQDWLNGK</td>
1901
+ <td>HC(311-326)</td>
1902
+ <td>1806.9992</td>
1903
+ <td>0.08</td>
1904
+ <td></td>
1905
+ </tr>
1906
+ <tr>
1907
+ <td>27.71</td>
1908
+ <td>2227.2001</td>
1909
+ <td>VVSVLTVLHQDWLNGKEYK</td>
1910
+ <td>HC(311-329)</td>
1911
+ <td>2227.2001</td>
1912
+ <td>0.01</td>
1913
+ <td></td>
1914
+ </tr>
1915
+ <tr>
1916
+ <td>6.58</td>
1917
+ <td>438.2110</td>
1918
+ <td>EYK</td>
1919
+ <td>HC(327-329)</td>
1920
+ <td>438.2115</td>
1921
+ <td>-0.95</td>
1922
+ <td></td>
1923
+ </tr>
1924
+ <tr>
1925
+ <td>1.97</td>
1926
+ <td>306.1361</td>
1927
+ <td>CK</td>
1928
+ <td>HC(330-331)</td>
1929
+ <td>306.1362</td>
1930
+ <td>-0.37</td>
1931
+ <td></td>
1932
+ </tr>
1933
+ <tr>
1934
+ <td>3.05</td>
1935
+ <td>446.2485</td>
1936
+ <td>VSNK</td>
1937
+ <td>HC(332-335)</td>
1938
+ <td>446.2489</td>
1939
+ <td>-0.91</td>
1940
+ <td></td>
1941
+ </tr>
1942
+ <tr>
1943
+ <td>18.00</td>
1944
+ <td>837.4964</td>
1945
+ <td>ALPAPIEK</td>
1946
+ <td>HC(336-343)</td>
1947
+ <td>837.4960</td>
1948
+ <td>0.51</td>
1949
+ <td></td>
1950
+ </tr>
1951
+ </table>
1952
+
1953
+
1954
+ <figure>
1955
+ </figure>
1956
+
1957
+
1958
+ RIC
1959
+
1960
+ <!-- PageFooter="biologics" -->
1961
+ <!-- PageNumber="17" -->
1962
+ <!-- PageBreak -->
1963
+
1964
+
1965
+ <figure>
1966
+ </figure>
1967
+
1968
+
1969
+ ### Results 18E2 HIS2 ABDEG - Identity
1970
+
1971
+
1972
+ <table>
1973
+ <tr>
1974
+ <th>RT</th>
1975
+ <th>Mass</th>
1976
+ <th>Sequence</th>
1977
+ <th>Seq Loc</th>
1978
+ <th>Tgt Seq Mass</th>
1979
+ <th>Diff (Bio, ppm)</th>
1980
+ <th>Pred Mods</th>
1981
+ </tr>
1982
+ <tr>
1983
+ <td>8.04</td>
1984
+ <td>447.2689</td>
1985
+ <td>TISK</td>
1986
+ <td>HC(344-347)</td>
1987
+ <td>447.2693</td>
1988
+ <td>-0.89</td>
1989
+ <td></td>
1990
+ </tr>
1991
+ <tr>
1992
+ <td>6.37</td>
1993
+ <td>655.3762</td>
1994
+ <td>AKGQPR</td>
1995
+ <td>HC(348-353)</td>
1996
+ <td>655.3766</td>
1997
+ <td>-0.53</td>
1998
+ <td></td>
1999
+ </tr>
2000
+ <tr>
2001
+ <td>5.34</td>
2002
+ <td>456.2436</td>
2003
+ <td>GQPR</td>
2004
+ <td>HC(350-353)</td>
2005
+ <td>456.2445</td>
2006
+ <td>-2</td>
2007
+ <td></td>
2008
+ </tr>
2009
+ <tr>
2010
+ <td>18.62</td>
2011
+ <td>1285.6659</td>
2012
+ <td>EPQVYTLPPSR</td>
2013
+ <td>HC(354-364)</td>
2014
+ <td>1285.6667</td>
2015
+ <td>-0.59</td>
2016
+ <td></td>
2017
+ </tr>
2018
+ <tr>
2019
+ <td>19.70</td>
2020
+ <td>1871.9625</td>
2021
+ <td>EPQVYTLPPSRDELTK</td>
2022
+ <td>HC(354-369)</td>
2023
+ <td>1871.9629</td>
2024
+ <td>-0.2</td>
2025
+ <td></td>
2026
+ </tr>
2027
+ <tr>
2028
+ <td>10.35</td>
2029
+ <td>604.3067</td>
2030
+ <td>DELTK</td>
2031
+ <td>HC(365-369)</td>
2032
+ <td>604.3068</td>
2033
+ <td>-0.24</td>
2034
+ <td></td>
2035
+ </tr>
2036
+ <tr>
2037
+ <td>21.71</td>
2038
+ <td>1160.6228</td>
2039
+ <td>NQVSLTCLVK</td>
2040
+ <td>HC(370-379)</td>
2041
+ <td>1160.6224</td>
2042
+ <td>0.4</td>
2043
+ <td></td>
2044
+ </tr>
2045
+ <tr>
2046
+ <td>24.22</td>
2047
+ <td>2543.1244</td>
2048
+ <td>GFYPSDIAVEWESNGQPENNYK</td>
2049
+ <td>HC(380-401)</td>
2050
+ <td>2543.1241</td>
2051
+ <td>0.12</td>
2052
+ <td></td>
2053
+ </tr>
2054
+ <tr>
2055
+ <td>25.93</td>
2056
+ <td>1872.9139</td>
2057
+ <td>TTPPVLDSDGSFFLYSK</td>
2058
+ <td>HC(402-418)</td>
2059
+ <td>1872.9146</td>
2060
+ <td>-0.35</td>
2061
+ <td></td>
2062
+ </tr>
2063
+ <tr>
2064
+ <td>12.41</td>
2065
+ <td>574.3327</td>
2066
+ <td>LTVDK</td>
2067
+ <td>HC(419-423)</td>
2068
+ <td>574.3326</td>
2069
+ <td>0.12</td>
2070
+ <td></td>
2071
+ </tr>
2072
+ <tr>
2073
+ <td>1.97</td>
2074
+ <td>261.1431</td>
2075
+ <td>SR</td>
2076
+ <td>HC(424-425)</td>
2077
+ <td>261.1437</td>
2078
+ <td>-2.18</td>
2079
+ <td></td>
2080
+ </tr>
2081
+ <tr>
2082
+ <td>33.08</td>
2083
+ <td>2263.0592</td>
2084
+ <td>SRWQQGNVFSCSVMHEALK</td>
2085
+ <td>HC(424-442)</td>
2086
+ <td>2263.0627</td>
2087
+ <td>-1.54</td>
2088
+ <td></td>
2089
+ </tr>
2090
+ <tr>
2091
+ <td>23.63</td>
2092
+ <td>3067.4465</td>
2093
+ <td>SRWQQGNVFSCSVMHEALKFHYTQK</td>
2094
+ <td>HC(424-448)</td>
2095
+ <td>3067.4545</td>
2096
+ <td>-2.63</td>
2097
+ <td></td>
2098
+ </tr>
2099
+ <tr>
2100
+ <td>23.22</td>
2101
+ <td>2019.9271</td>
2102
+ <td>WQQGNVFSCSVMHEALK</td>
2103
+ <td>HC(426-442)</td>
2104
+ <td>2019.9295</td>
2105
+ <td>-1.18</td>
2106
+ <td></td>
2107
+ </tr>
2108
+ <tr>
2109
+ <td>12.52</td>
2110
+ <td>822.4028</td>
2111
+ <td>FHYTQK</td>
2112
+ <td>HC(443-448)</td>
2113
+ <td>822.4024</td>
2114
+ <td>0.43</td>
2115
+ <td></td>
2116
+ </tr>
2117
+ <tr>
2118
+ <td>18.20</td>
2119
+ <td>659.3486</td>
2120
+ <td>SLSLSPG</td>
2121
+ <td>HC(449-455)</td>
2122
+ <td>659.3490</td>
2123
+ <td>-0.58</td>
2124
+ <td></td>
2125
+ </tr>
2126
+ <tr>
2127
+ <td>22.64</td>
2128
+ <td>1957.0099</td>
2129
+ <td>SSELTQDPAVSVALGQTVR</td>
2130
+ <td>LC(001-019)</td>
2131
+ <td>1957.0116</td>
2132
+ <td>-0.91</td>
2133
+ <td></td>
2134
+ </tr>
2135
+ <tr>
2136
+ <td>8.99</td>
2137
+ <td>848.3799</td>
2138
+ <td>ITCQGDR</td>
2139
+ <td>LC(020-026)</td>
2140
+ <td>848.3811</td>
2141
+ <td>-1.4</td>
2142
+ <td></td>
2143
+ </tr>
2144
+ <tr>
2145
+ <td>8.03</td>
2146
+ <td>431.2486</td>
2147
+ <td>LGSR</td>
2148
+ <td>LC(027-030)</td>
2149
+ <td>431.2492</td>
2150
+ <td>-1.39</td>
2151
+ <td></td>
2152
+ </tr>
2153
+ <tr>
2154
+ <td>24.57</td>
2155
+ <td>2703.3443</td>
2156
+ <td>YIHWYQQKPGQAPVLVIYDDDR</td>
2157
+ <td>LC(031-052)</td>
2158
+ <td>2703.3445</td>
2159
+ <td>-0.08</td>
2160
+ <td></td>
2161
+ </tr>
2162
+ <tr>
2163
+ <td>23.74</td>
2164
+ <td>3581.8172</td>
2165
+ <td>YIHWYQQKPGQAPVLVIYDDDRRPSGIPDR</td>
2166
+ <td>LC(031-060)</td>
2167
+ <td>3581.8168</td>
2168
+ <td>0.13</td>
2169
+ <td></td>
2170
+ </tr>
2171
+ <tr>
2172
+ <td>13.04</td>
2173
+ <td>896.4826</td>
2174
+ <td>RPSGIPDR</td>
2175
+ <td>LC(053-060)</td>
2176
+ <td>896.4828</td>
2177
+ <td>-0.25</td>
2178
+ <td></td>
2179
+ </tr>
2180
+ <tr>
2181
+ <td>25.10</td>
2182
+ <td>5127.3123</td>
2183
+ <td>FSGSSSGNTASLTITGAQAEDEADYYCQSADSSGNPVFGGGTQLTVLGQPK</td>
2184
+ <td>LC(061-111)</td>
2185
+ <td>5127.3164</td>
2186
+ <td>-0.8</td>
2187
+ <td></td>
2188
+ </tr>
2189
+ <tr>
2190
+ <td>23.58</td>
2191
+ <td>1985.0103</td>
2192
+ <td>AAPSVTLFPPSSEELQANK</td>
2193
+ <td>LC(112-130)</td>
2194
+ <td>1985.0106</td>
2195
+ <td>-0.13</td>
2196
+ <td></td>
2197
+ </tr>
2198
+ <tr>
2199
+ <td>34.71</td>
2200
+ <td>4177.1390</td>
2201
+ <td>AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWK</td>
2202
+ <td>LC(112-150)</td>
2203
+ <td>4177.1446</td>
2204
+ <td>-1.33</td>
2205
+ <td></td>
2206
+ </tr>
2207
+ <tr>
2208
+ <td>33.08</td>
2209
+ <td>2210.1419</td>
2210
+ <td>ATLVCLISDFYPGAVTVAWK</td>
2211
+ <td>LC(131-150)</td>
2212
+ <td>2210.1446</td>
2213
+ <td>-1.2</td>
2214
+ <td></td>
2215
+ </tr>
2216
+ <tr>
2217
+ <td>10.21</td>
2218
+ <td>702.3549</td>
2219
+ <td>ADSSPVK</td>
2220
+ <td>LC(151-157)</td>
2221
+ <td>702.3548</td>
2222
+ <td>0.14</td>
2223
+ <td></td>
2224
+ </tr>
2225
+ <tr>
2226
+ <td>11.55</td>
2227
+ <td>989.5031</td>
2228
+ <td>AGVETTTPSK</td>
2229
+ <td>LC(158-167)</td>
2230
+ <td>989.5029</td>
2231
+ <td>0.15</td>
2232
+ <td></td>
2233
+ </tr>
2234
+ <tr>
2235
+ <td>1.96</td>
2236
+ <td>589.2819</td>
2237
+ <td>QSNNK</td>
2238
+ <td>LC(168-172)</td>
2239
+ <td>589.2820</td>
2240
+ <td>-0.15</td>
2241
+ <td></td>
2242
+ </tr>
2243
+ <tr>
2244
+ <td>24.34</td>
2245
+ <td>1742.8513</td>
2246
+ <td>YAASSYLSLTPEQWK</td>
2247
+ <td>LC(173-187)</td>
2248
+ <td>1742.8516</td>
2249
+ <td>-0.14</td>
2250
+ <td></td>
2251
+ </tr>
2252
+ <tr>
2253
+ <td>2.10</td>
2254
+ <td>398.2021</td>
2255
+ <td>SHR</td>
2256
+ <td>LC(188-190)</td>
2257
+ <td>398.2026</td>
2258
+ <td>-1.29</td>
2259
+ <td></td>
2260
+ </tr>
2261
+ <tr>
2262
+ <td>13.38</td>
2263
+ <td>1710.7519</td>
2264
+ <td>SYSCQVTHEGSTVEK</td>
2265
+ <td>LC(191-205)</td>
2266
+ <td>1710.7519</td>
2267
+ <td>-0.03</td>
2268
+ <td></td>
2269
+ </tr>
2270
+ <tr>
2271
+ <td>11.73</td>
2272
+ <td>863.3695</td>
2273
+ <td>TVAPTECS</td>
2274
+ <td>LC(206-213)</td>
2275
+ <td>863.3695</td>
2276
+ <td>0.06</td>
2277
+ <td></td>
2278
+ </tr>
2279
+ </table>
2280
+
2281
+
2282
+ <figure>
2283
+
2284
+ RIC
2285
+
2286
+ <!-- PageFooter="biologics" -->
2287
+
2288
+ </figure>
2289
+
2290
+
2291
+ <!-- PageNumber="18" -->
2292
+ <!-- PageBreak -->
2293
+
2294
+
2295
+ <figure>
2296
+ </figure>
2297
+
2298
+
2299
+ ## Results 18E2 HIS2 ABDEG - Identity
2300
+
2301
+
2302
+ ### >HEAVY CHAIN: 18E2HIS2
2303
+
2304
+ EVOLLESGGGLVQPGGSLRLSCAASGFTFSSYVMHWVRQAPGKGLEWVSSIYHDGSHTYYADFVKGRFTISRDNSKNTLYLQ
2305
+ MNSLRAEDTAVYYCAKGTSYSGSYYYTDPFFGSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT
2306
+ VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGG
2307
+ PSVFLFPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY
2308
+ KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD
2309
+ GSFFLYSKLTVDKSRWQQGNVFSCSVMHEALKFHYTOKSLSLSPGK
2310
+
2311
+
2312
+ ### >LIGHT CHAIN : 18E2HIS2
2313
+
2314
+ SSELTQDPAVSVALGQTVRITCQGDRLGSRYIHWYQQKPGQAPVLVIYDDDRRPSGIPDRFSGSSSGNTASLTITGAQAEDE
2315
+ ADYYCOSADSSGNPVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT
2316
+ PSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
2317
+
2318
+ Sequence coverage of 99.8%
2319
+
2320
+
2321
+ <figure>
2322
+
2323
+ RIC
2324
+
2325
+ </figure>
2326
+
2327
+
2328
+ <!-- PageFooter="biologics" -->
2329
+ <!-- PageNumber="19" -->
2330
+ <!-- PageBreak -->
2331
+
2332
+
2333
+ <figure>
2334
+ </figure>
2335
+
2336
+
2337
+ ## Results 18E2 HIS2 ABDEG - Modifications (oxidation)
2338
+
2339
+
2340
+ <table>
2341
+ <tr>
2342
+ <th>Sequence</th>
2343
+ <th>Seq Loc</th>
2344
+ <th>Modification</th>
2345
+ <th>18E2 HIS2 ABDEG</th>
2346
+ <th>18E2 HIS2 ABDEG T6w</th>
2347
+ </tr>
2348
+ <tr>
2349
+ <td rowspan="2">WQQGNVFSCSVMHEALK</td>
2350
+ <td rowspan="2">HC(426-442)</td>
2351
+ <td rowspan="2">Oxidation</td>
2352
+ <td>3.7</td>
2353
+ <td rowspan="2">18.2 81.8</td>
2354
+ </tr>
2355
+ <tr>
2356
+ <td>96.3</td>
2357
+ </tr>
2358
+ </table>
2359
+
2360
+ BOLD: relevant increase upon stressing
2361
+ Note: Only modifications > 0.5% are reported
2362
+
2363
+
2364
+ <figure>
2365
+
2366
+ RIC
2367
+
2368
+ </figure>
2369
+
2370
+
2371
+ <!-- PageFooter="biologics" -->
2372
+ <!-- PageNumber="20" -->
2373
+ <!-- PageBreak -->
2374
+
2375
+
2376
+ <figure>
2377
+ </figure>
2378
+
2379
+
2380
+ ## Results 18E2 HIS2 ABDEG - Modifications (deam/isoD)
2381
+
2382
+
2383
+ <table>
2384
+ <tr>
2385
+ <th>Sequence</th>
2386
+ <th>Seq Loc</th>
2387
+ <th>Modification</th>
2388
+ <th>18E2 HIS2 ABDEG</th>
2389
+ <th>18E2 HIS2 ABDEG T6w</th>
2390
+ </tr>
2391
+ <tr>
2392
+ <td rowspan="2">EVQLLESGGGLVQPGGSLR</td>
2393
+ <td rowspan="2">HC(1-19)</td>
2394
+ <td>Deamidation</td>
2395
+ <td>2.5</td>
2396
+ <td>2.0</td>
2397
+ </tr>
2398
+ <tr>
2399
+ <td></td>
2400
+ <td>97.5</td>
2401
+ <td>98.0</td>
2402
+ </tr>
2403
+ <tr>
2404
+ <td rowspan="2">NTLYLQMNSLR</td>
2405
+ <td rowspan="2">HC(77-87)</td>
2406
+ <td rowspan="2">Deamidation</td>
2407
+ <td>1.5</td>
2408
+ <td>2.2</td>
2409
+ </tr>
2410
+ <tr>
2411
+ <td>98.5</td>
2412
+ <td>97.8</td>
2413
+ </tr>
2414
+ <tr>
2415
+ <td rowspan="2">FNWYVDGVEVHNAK</td>
2416
+ <td rowspan="2">HC(284-297)</td>
2417
+ <td>IsoD</td>
2418
+ <td>0.8</td>
2419
+ <td>1.7</td>
2420
+ </tr>
2421
+ <tr>
2422
+ <td></td>
2423
+ <td>99.2</td>
2424
+ <td>98.3</td>
2425
+ </tr>
2426
+ <tr>
2427
+ <td rowspan="3">VVSVLTVLHQDWLNGK</td>
2428
+ <td rowspan="3">HC(311-326)</td>
2429
+ <td>Deamidation</td>
2430
+ <td>0.9</td>
2431
+ <td>1.5</td>
2432
+ </tr>
2433
+ <tr>
2434
+ <td></td>
2435
+ <td>97.1</td>
2436
+ <td>96.2</td>
2437
+ </tr>
2438
+ <tr>
2439
+ <td>Succinimide</td>
2440
+ <td>2.0</td>
2441
+ <td>2.3</td>
2442
+ </tr>
2443
+ <tr>
2444
+ <td rowspan="2">NQVSLTCLVK</td>
2445
+ <td rowspan="2">HC(370-379)</td>
2446
+ <td>Deamidation</td>
2447
+ <td>4.0</td>
2448
+ <td>4.9</td>
2449
+ </tr>
2450
+ <tr>
2451
+ <td></td>
2452
+ <td>96.0</td>
2453
+ <td>95.1</td>
2454
+ </tr>
2455
+ <tr>
2456
+ <td rowspan="2">GFYPSDIAVEWESNGQPENNYK</td>
2457
+ <td rowspan="2">HC(380-401)</td>
2458
+ <td>Deamidation</td>
2459
+ <td>6.1</td>
2460
+ <td>24.5</td>
2461
+ </tr>
2462
+ <tr>
2463
+ <td></td>
2464
+ <td>93.9</td>
2465
+ <td>75.5</td>
2466
+ </tr>
2467
+ <tr>
2468
+ <td>TTPPVLDSDGSFFLYSK</td>
2469
+ <td>HC(402-418)</td>
2470
+ <td>IsoD</td>
2471
+ <td>0.7 99.3</td>
2472
+ <td>1.6 98.4</td>
2473
+ </tr>
2474
+ </table>
2475
+
2476
+ BOLD: relevant increase upon stressing
2477
+
2478
+ Note: Only modifications > 0.5% are reported
2479
+
2480
+
2481
+ <figure>
2482
+ </figure>
2483
+
2484
+
2485
+ RIC
2486
+ biologics
2487
+
2488
+ <!-- PageNumber="21" -->
2489
+ <!-- PageBreak -->
2490
+
2491
+
2492
+ <figure>
2493
+ </figure>
2494
+
2495
+
2496
+ ### Results 18E2 HIS2 ABDEG - Modifications (pyroE)
2497
+
2498
+
2499
+ <table>
2500
+ <tr>
2501
+ <th>Sequence</th>
2502
+ <th>Seq Loc</th>
2503
+ <th>Modification</th>
2504
+ <th>18E2 HIS2 ABDEG</th>
2505
+ <th>18E2 HIS2 ABDEG T6w</th>
2506
+ </tr>
2507
+ <tr>
2508
+ <td>EVQLLESGGGLVQPGGSLR</td>
2509
+ <td>HC(1-19)</td>
2510
+ <td>PyroE</td>
2511
+ <td>2.2 97.8</td>
2512
+ <td>11.1 89.0</td>
2513
+ </tr>
2514
+ </table>
2515
+
2516
+
2517
+ <figure>
2518
+
2519
+ RIC
2520
+
2521
+ </figure>
2522
+
2523
+
2524
+ <!-- PageFooter="biologics" -->
2525
+ <!-- PageNumber="22" -->
2526
+ <!-- PageBreak -->
2527
+
2528
+
2529
+ <figure>
2530
+ </figure>
2531
+
2532
+
2533
+ ## Results 18E2 HIS2 ABDEG - Modifications
2534
+
2535
+
2536
+ ### >HEAVY CHAIN : 18E2HIS2
2537
+
2538
+ EVOLLESGGGLVQPGGSLRLSCAASGFTFSSYVMHWVRQAPGKGLEWVSSIYHDGSHTYYADFVKGRFTISRDNSKNTLYLQ
2539
+ MNSLRAEDTAVYYCAKGTSYSGSYYYTDPFFGSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT
2540
+ VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGG
2541
+ PSVFLFPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY
2542
+ KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD
2543
+ GSFFLYSKLTVDKSRWQQGNVFSCSVMHEALKFHYTQKSLSLSPGK
2544
+
2545
+
2546
+ ### >LIGHT CHAIN : 18E2HIS2
2547
+
2548
+ SSELTQDPAVSVALGQTVRITCQGDRLGSRYIHWYQQKPGQAPVLVIYDDDRRPSGIPDRFSGSSSGNTASLTITGAQAEDE
2549
+ ADYYCOSADSSGNPVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT
2550
+ PSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
2551
+
2552
+
2553
+ <figure>
2554
+
2555
+ RIC
2556
+
2557
+ </figure>
2558
+
2559
+
2560
+ <!-- PageFooter="biologics" -->
2561
+ <!-- PageFooter="RED: relevant increase upon stressing" -->
2562
+ <!-- PageNumber="23" -->
2563
+ <!-- PageBreak -->
2564
+
2565
+
2566
+ <figure>
2567
+ </figure>
2568
+
2569
+
2570
+ ## Results 18E2VL HIS LALA ABDEG - Identity
2571
+
2572
+
2573
+ <table>
2574
+ <tr>
2575
+ <th>RT</th>
2576
+ <th>Mass</th>
2577
+ <th>Sequence</th>
2578
+ <th>Seq Loc</th>
2579
+ <th>Tgt Seq Mass</th>
2580
+ <th>Diff (Bio, ppm)</th>
2581
+ <th>Pred Mods</th>
2582
+ </tr>
2583
+ <tr>
2584
+ <td>23.53</td>
2585
+ <td>1895.0099</td>
2586
+ <td>EVQLLESGGGLVQPGGSLR</td>
2587
+ <td>HC(001-019)</td>
2588
+ <td>1895.0113</td>
2589
+ <td>-0.71</td>
2590
+ <td></td>
2591
+ </tr>
2592
+ <tr>
2593
+ <td>30.89</td>
2594
+ <td>2154.9844</td>
2595
+ <td>LSCAASGFTFSSYVMSWVR</td>
2596
+ <td>HC(020-038)</td>
2597
+ <td>2154.9867</td>
2598
+ <td>-1.06</td>
2599
+ <td></td>
2600
+ </tr>
2601
+ <tr>
2602
+ <td>33.75</td>
2603
+ <td>5191.4234</td>
2604
+ <td>LSCAASGFTFSSYVMSWVRQAPGKGLEWVSSIYHDGSHTYYADFVK</td>
2605
+ <td>HC(020-065)</td>
2606
+ <td>5191.4273</td>
2607
+ <td>-0.77</td>
2608
+ <td></td>
2609
+ </tr>
2610
+ <tr>
2611
+ <td>6.08</td>
2612
+ <td>499.2755</td>
2613
+ <td>QAPGK</td>
2614
+ <td>HC(039-043)</td>
2615
+ <td>499.2755</td>
2616
+ <td>0.01</td>
2617
+ <td></td>
2618
+ </tr>
2619
+ <tr>
2620
+ <td>25.60</td>
2621
+ <td>2573.1851</td>
2622
+ <td>GLEWVSSIYHDGSHTYYADFVK</td>
2623
+ <td>HC(044-065)</td>
2624
+ <td>2573.1863</td>
2625
+ <td>-0.48</td>
2626
+ <td></td>
2627
+ </tr>
2628
+ <tr>
2629
+ <td>25.93</td>
2630
+ <td>3390.6398</td>
2631
+ <td>GLEWVSSIYHDGSHTYYADFVKGRFTISR</td>
2632
+ <td>HC(044-072)</td>
2633
+ <td>3390.6422</td>
2634
+ <td>-0.72</td>
2635
+ <td></td>
2636
+ </tr>
2637
+ <tr>
2638
+ <td>1.98</td>
2639
+ <td>231.1327</td>
2640
+ <td>GR</td>
2641
+ <td>HC(066-067)</td>
2642
+ <td>231.1331</td>
2643
+ <td>-1.81</td>
2644
+ <td></td>
2645
+ </tr>
2646
+ <tr>
2647
+ <td>15.94</td>
2648
+ <td>835.4666</td>
2649
+ <td>GRFTISR</td>
2650
+ <td>HC(066-072)</td>
2651
+ <td>835.4664</td>
2652
+ <td>0.19</td>
2653
+ <td></td>
2654
+ </tr>
2655
+ <tr>
2656
+ <td>16.06</td>
2657
+ <td>622.3441</td>
2658
+ <td>FTISR</td>
2659
+ <td>HC(068-072)</td>
2660
+ <td>622.3439</td>
2661
+ <td>0.33</td>
2662
+ <td></td>
2663
+ </tr>
2664
+ <tr>
2665
+ <td>22.54</td>
2666
+ <td>1351.6916</td>
2667
+ <td>NTLYLQMNSLR</td>
2668
+ <td>HC(077-087)</td>
2669
+ <td>1351.6918</td>
2670
+ <td>-0.13</td>
2671
+ <td></td>
2672
+ </tr>
2673
+ <tr>
2674
+ <td>15.52</td>
2675
+ <td>1289.5586</td>
2676
+ <td>AEDTAVYYCAK</td>
2677
+ <td>HC(088-098)</td>
2678
+ <td>1289.5598</td>
2679
+ <td>-0.93</td>
2680
+ <td></td>
2681
+ </tr>
2682
+ <tr>
2683
+ <td>28.17</td>
2684
+ <td>3400.5377</td>
2685
+ <td>GTSYSGSYYYTDPFFGSWGQGTLVTVSSASTK</td>
2686
+ <td>HC(099-130)</td>
2687
+ <td>3400.5412</td>
2688
+ <td>-1.03</td>
2689
+ <td></td>
2690
+ </tr>
2691
+ <tr>
2692
+ <td>22.50</td>
2693
+ <td>1185.6390</td>
2694
+ <td>GPSVFPLAPSSK</td>
2695
+ <td>HC(131-142)</td>
2696
+ <td>1185.6394</td>
2697
+ <td>-0.35</td>
2698
+ <td></td>
2699
+ </tr>
2700
+ <tr>
2701
+ <td>20.37</td>
2702
+ <td>1320.6709</td>
2703
+ <td>STSGGTAALGCLVK</td>
2704
+ <td>HC(143-156)</td>
2705
+ <td>1320.6708</td>
2706
+ <td>0.11</td>
2707
+ <td></td>
2708
+ </tr>
2709
+ <tr>
2710
+ <td>31.67</td>
2711
+ <td>8014.9558</td>
2712
+ <td>STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK</td>
2713
+ <td>HC(143-219)</td>
2714
+ <td>8014.9674</td>
2715
+ <td>-1.44</td>
2716
+ <td></td>
2717
+ </tr>
2718
+ <tr>
2719
+ <td>30.98</td>
2720
+ <td>6712.2902</td>
2721
+ <td>DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK</td>
2722
+ <td>HC(157-219)</td>
2723
+ <td>6712.3072</td>
2724
+ <td>-2.53</td>
2725
+ <td></td>
2726
+ </tr>
2727
+ <tr>
2728
+ <td>3.78</td>
2729
+ <td>360.2002</td>
2730
+ <td>VDK</td>
2731
+ <td>HC(220-222)</td>
2732
+ <td>360.2009</td>
2733
+ <td>-1.91</td>
2734
+ <td></td>
2735
+ </tr>
2736
+ <tr>
2737
+ <td>3.06</td>
2738
+ <td>488.2956</td>
2739
+ <td>VDKK</td>
2740
+ <td>HC(220-223)</td>
2741
+ <td>488.2959</td>
2742
+ <td>-0.57</td>
2743
+ <td></td>
2744
+ </tr>
2745
+ <tr>
2746
+ <td>8.41</td>
2747
+ <td>599.3647</td>
2748
+ <td>KVEPK</td>
2749
+ <td>HC(223-227)</td>
2750
+ <td>599.3643</td>
2751
+ <td>0.73</td>
2752
+ <td></td>
2753
+ </tr>
2754
+ <tr>
2755
+ <td>7.89</td>
2756
+ <td>471.2691</td>
2757
+ <td>VEPK</td>
2758
+ <td>HC(224-227)</td>
2759
+ <td>471.2693</td>
2760
+ <td>-0.5</td>
2761
+ <td></td>
2762
+ </tr>
2763
+ <tr>
2764
+ <td>2.06</td>
2765
+ <td>508.1944</td>
2766
+ <td>SCDK</td>
2767
+ <td>HC(228-231)</td>
2768
+ <td>508.1952</td>
2769
+ <td>-1.57</td>
2770
+ <td></td>
2771
+ </tr>
2772
+ <tr>
2773
+ <td>22.03</td>
2774
+ <td>3249.5197</td>
2775
+ <td>SCDKTHTCPPCPAPEAAGGPSVFLFPPKPK</td>
2776
+ <td>HC(228-257)</td>
2777
+ <td>3249.5410</td>
2778
+ <td>-6.55</td>
2779
+ <td></td>
2780
+ </tr>
2781
+ <tr>
2782
+ <td>24.58</td>
2783
+ <td>2759.3550</td>
2784
+ <td>THTCPPCPAPEAAGGPSVFLFPPKPK</td>
2785
+ <td>HC(232-257)</td>
2786
+ <td>2759.3564</td>
2787
+ <td>-0.5</td>
2788
+ <td></td>
2789
+ </tr>
2790
+ <tr>
2791
+ <td>17.75</td>
2792
+ <td>880.4653</td>
2793
+ <td>DTLYITR</td>
2794
+ <td>HC(258-264)</td>
2795
+ <td>880.4654</td>
2796
+ <td>-0.18</td>
2797
+ <td></td>
2798
+ </tr>
2799
+ <tr>
2800
+ <td>22.03</td>
2801
+ <td>2166.0157</td>
2802
+ <td>EPEVTCVVVDVSHEDPEVK</td>
2803
+ <td>HC(265-283)</td>
2804
+ <td>2166.0151</td>
2805
+ <td>0.29</td>
2806
+ <td></td>
2807
+ </tr>
2808
+ <tr>
2809
+ <td>22.35</td>
2810
+ <td>1676.7944</td>
2811
+ <td>FNWYVDGVEVHNAK</td>
2812
+ <td>HC(284-297)</td>
2813
+ <td>1676.7947</td>
2814
+ <td>-0.16</td>
2815
+ <td></td>
2816
+ </tr>
2817
+ <tr>
2818
+ <td>4.64</td>
2819
+ <td>500.3070</td>
2820
+ <td>TKPR</td>
2821
+ <td>HC(298-301)</td>
2822
+ <td>500.3071</td>
2823
+ <td>-0.22</td>
2824
+ <td></td>
2825
+ </tr>
2826
+ <tr>
2827
+ <td>11.96</td>
2828
+ <td>1188.5044</td>
2829
+ <td>EEQYNSTYR</td>
2830
+ <td>HC(302-310)</td>
2831
+ <td>1188.5047</td>
2832
+ <td>-0.27</td>
2833
+ <td></td>
2834
+ </tr>
2835
+ <tr>
2836
+ <td>11.18</td>
2837
+ <td>2633.0350</td>
2838
+ <td>EEQYNSTYR</td>
2839
+ <td>HC(302-310)</td>
2840
+ <td>2633.0386</td>
2841
+ <td>-1.39</td>
2842
+ <td>G0F</td>
2843
+ </tr>
2844
+ <tr>
2845
+ <td>28.70</td>
2846
+ <td>1806.9988</td>
2847
+ <td>VVSVLTVLHQDWLNGK</td>
2848
+ <td>HC(311-326)</td>
2849
+ <td>1806.9992</td>
2850
+ <td>-0.26</td>
2851
+ <td></td>
2852
+ </tr>
2853
+ <tr>
2854
+ <td>27.74</td>
2855
+ <td>2227.1974</td>
2856
+ <td>VVSVLTVLHQDWLNGKEYK</td>
2857
+ <td>HC(311-329)</td>
2858
+ <td>2227.2001</td>
2859
+ <td>-1.23</td>
2860
+ <td></td>
2861
+ </tr>
2862
+ <tr>
2863
+ <td>6.58</td>
2864
+ <td>438.2111</td>
2865
+ <td>EYK</td>
2866
+ <td>HC(327-329)</td>
2867
+ <td>438.2115</td>
2868
+ <td>-0.78</td>
2869
+ <td></td>
2870
+ </tr>
2871
+ <tr>
2872
+ <td>1.98</td>
2873
+ <td>306.1358</td>
2874
+ <td>CK</td>
2875
+ <td>HC(330-331)</td>
2876
+ <td>306.1362</td>
2877
+ <td>-1.29</td>
2878
+ <td></td>
2879
+ </tr>
2880
+ </table>
2881
+
2882
+
2883
+ <figure>
2884
+
2885
+ RIC
2886
+
2887
+ <!-- PageFooter="biologics" -->
2888
+
2889
+ </figure>
2890
+
2891
+
2892
+ <!-- PageNumber="24" -->
2893
+ <!-- PageBreak -->
2894
+
2895
+
2896
+ <figure>
2897
+ </figure>
2898
+
2899
+
2900
+ ## Results 18E2VL HIS LALA ABDEG - Identity
2901
+
2902
+
2903
+ <table>
2904
+ <tr>
2905
+ <th>RT</th>
2906
+ <th>Mass</th>
2907
+ <th>Sequence</th>
2908
+ <th>Seq Loc</th>
2909
+ <th>Tgt Seq Mass</th>
2910
+ <th>Diff (Bio, ppm)</th>
2911
+ <th>Pred Mods</th>
2912
+ </tr>
2913
+ <tr>
2914
+ <td>3.05</td>
2915
+ <td>446.2487</td>
2916
+ <td>VSNK</td>
2917
+ <td>HC(332-335)</td>
2918
+ <td>446.2489</td>
2919
+ <td>-0.55</td>
2920
+ <td></td>
2921
+ </tr>
2922
+ <tr>
2923
+ <td>28.16</td>
2924
+ <td>1695.0096</td>
2925
+ <td>VSNKALPAPIEKTISK</td>
2926
+ <td>HC(332-347)</td>
2927
+ <td>1694.9931</td>
2928
+ <td>9.77</td>
2929
+ <td></td>
2930
+ </tr>
2931
+ <tr>
2932
+ <td>18.00</td>
2933
+ <td>837.4958</td>
2934
+ <td>ALPAPIEK</td>
2935
+ <td>HC(336-343)</td>
2936
+ <td>837.4960</td>
2937
+ <td>-0.21</td>
2938
+ <td></td>
2939
+ </tr>
2940
+ <tr>
2941
+ <td>8.04</td>
2942
+ <td>447.2690</td>
2943
+ <td>TISK</td>
2944
+ <td>HC(344-347)</td>
2945
+ <td>447.2693</td>
2946
+ <td>-0.75</td>
2947
+ <td></td>
2948
+ </tr>
2949
+ <tr>
2950
+ <td>6.37</td>
2951
+ <td>655.3759</td>
2952
+ <td>AKGQPR</td>
2953
+ <td>HC(348-353)</td>
2954
+ <td>655.3766</td>
2955
+ <td>-1.07</td>
2956
+ <td></td>
2957
+ </tr>
2958
+ <tr>
2959
+ <td>5.31</td>
2960
+ <td>456.2435</td>
2961
+ <td>GQPR</td>
2962
+ <td>HC(350-353)</td>
2963
+ <td>456.2445</td>
2964
+ <td>-2.09</td>
2965
+ <td></td>
2966
+ </tr>
2967
+ <tr>
2968
+ <td>18.66</td>
2969
+ <td>1285.6660</td>
2970
+ <td>EPQVYTLPPSR</td>
2971
+ <td>HC(354-364)</td>
2972
+ <td>1285.6667</td>
2973
+ <td>-0.5</td>
2974
+ <td></td>
2975
+ </tr>
2976
+ <tr>
2977
+ <td>19.69</td>
2978
+ <td>1871.9618</td>
2979
+ <td>EPQVYTLPPSRDELTK</td>
2980
+ <td>HC(354-369)</td>
2981
+ <td>1871.9629</td>
2982
+ <td>-0.59</td>
2983
+ <td></td>
2984
+ </tr>
2985
+ <tr>
2986
+ <td>10.34</td>
2987
+ <td>604.3071</td>
2988
+ <td>DELTK</td>
2989
+ <td>HC(365-369)</td>
2990
+ <td>604.3068</td>
2991
+ <td>0.48</td>
2992
+ <td></td>
2993
+ </tr>
2994
+ <tr>
2995
+ <td>21.72</td>
2996
+ <td>1160.6226</td>
2997
+ <td>NQVSLTCLVK</td>
2998
+ <td>HC(370-379)</td>
2999
+ <td>1160.6224</td>
3000
+ <td>0.17</td>
3001
+ <td></td>
3002
+ </tr>
3003
+ <tr>
3004
+ <td>24.23</td>
3005
+ <td>2543.1202</td>
3006
+ <td>GFYPSDIAVEWESNGQPENNYK</td>
3007
+ <td>HC(380-401)</td>
3008
+ <td>2543.1241</td>
3009
+ <td>-1.55</td>
3010
+ <td></td>
3011
+ </tr>
3012
+ <tr>
3013
+ <td>25.94</td>
3014
+ <td>1872.9129</td>
3015
+ <td>TTPPVLDSDGSFFLYSK</td>
3016
+ <td>HC(402-418)</td>
3017
+ <td>1872.9146</td>
3018
+ <td>-0.88</td>
3019
+ <td></td>
3020
+ </tr>
3021
+ <tr>
3022
+ <td>12.41</td>
3023
+ <td>574.3326</td>
3024
+ <td>LTVDK</td>
3025
+ <td>HC(419-423)</td>
3026
+ <td>574.3326</td>
3027
+ <td>-0.09</td>
3028
+ <td></td>
3029
+ </tr>
3030
+ <tr>
3031
+ <td>16.06</td>
3032
+ <td>261.1445</td>
3033
+ <td>SR</td>
3034
+ <td>HC(424-425)</td>
3035
+ <td>261.1437</td>
3036
+ <td>2.98</td>
3037
+ <td></td>
3038
+ </tr>
3039
+ <tr>
3040
+ <td>23.23</td>
3041
+ <td>2019.9271</td>
3042
+ <td>WQQGNVFSCSVMHEALK</td>
3043
+ <td>HC(426-442)</td>
3044
+ <td>2019.9295</td>
3045
+ <td>-1.2</td>
3046
+ <td></td>
3047
+ </tr>
3048
+ <tr>
3049
+ <td>24.16</td>
3050
+ <td>2824.3141</td>
3051
+ <td>WQQGNVFSCSVMHEALKFHYTQK</td>
3052
+ <td>HC(426-448)</td>
3053
+ <td>2824.3214</td>
3054
+ <td>-2.58</td>
3055
+ <td></td>
3056
+ </tr>
3057
+ <tr>
3058
+ <td>12.51</td>
3059
+ <td>822.4014</td>
3060
+ <td>FHYTQK</td>
3061
+ <td>HC(443-448)</td>
3062
+ <td>822.4024</td>
3063
+ <td>-1.25</td>
3064
+ <td></td>
3065
+ </tr>
3066
+ <tr>
3067
+ <td>18.196</td>
3068
+ <td>659.3479</td>
3069
+ <td>SLSLSPG</td>
3070
+ <td>HC(449-455)</td>
3071
+ <td>659.3490</td>
3072
+ <td>-1.68</td>
3073
+ <td></td>
3074
+ </tr>
3075
+ <tr>
3076
+ <td>16.87</td>
3077
+ <td>787.4415</td>
3078
+ <td>SLSLSPGK</td>
3079
+ <td>HC(449-456)</td>
3080
+ <td>787.4440</td>
3081
+ <td>-3.09</td>
3082
+ <td></td>
3083
+ </tr>
3084
+ <tr>
3085
+ <td>22.65</td>
3086
+ <td>1957.0108</td>
3087
+ <td>SSELTQDPAVSVALGQTVR</td>
3088
+ <td>LC(001-019)</td>
3089
+ <td>1957.0116</td>
3090
+ <td>-0.45</td>
3091
+ <td></td>
3092
+ </tr>
3093
+ <tr>
3094
+ <td>8.99</td>
3095
+ <td>848.3805</td>
3096
+ <td>ITCQGDR</td>
3097
+ <td>LC(020-026)</td>
3098
+ <td>848.3811</td>
3099
+ <td>-0.67</td>
3100
+ <td></td>
3101
+ </tr>
3102
+ <tr>
3103
+ <td>8.03</td>
3104
+ <td>431.2489</td>
3105
+ <td>LGSR</td>
3106
+ <td>LC(027-030)</td>
3107
+ <td>431.2492</td>
3108
+ <td>-0.69</td>
3109
+ <td></td>
3110
+ </tr>
3111
+ <tr>
3112
+ <td>24.59</td>
3113
+ <td>2703.3425</td>
3114
+ <td>YIHWYQQKPGQAPVLVIYDDDR</td>
3115
+ <td>LC(031-052)</td>
3116
+ <td>2703.3445</td>
3117
+ <td>-0.75</td>
3118
+ <td></td>
3119
+ </tr>
3120
+ <tr>
3121
+ <td>23.77</td>
3122
+ <td>3581.8139</td>
3123
+ <td>YIHWYQQKPGQAPVLVIYDDDRRPSGIPDR</td>
3124
+ <td>LC(031-060)</td>
3125
+ <td>3581.8168</td>
3126
+ <td>-0.82</td>
3127
+ <td></td>
3128
+ </tr>
3129
+ <tr>
3130
+ <td>13.04</td>
3131
+ <td>896.4835</td>
3132
+ <td>RPSGIPDR</td>
3133
+ <td>LC(053-060)</td>
3134
+ <td>896.4828</td>
3135
+ <td>0.79</td>
3136
+ <td></td>
3137
+ </tr>
3138
+ <tr>
3139
+ <td>25.11</td>
3140
+ <td>5127.3093</td>
3141
+ <td>FSGSSSGNTASLTITGAQAEDEADYYCQSADSSGNPVFGGGTQLTVLGQPK</td>
3142
+ <td>LC(061-111)</td>
3143
+ <td>5127.3164</td>
3144
+ <td>-1.38</td>
3145
+ <td></td>
3146
+ </tr>
3147
+ <tr>
3148
+ <td>23.58</td>
3149
+ <td>1985.0087</td>
3150
+ <td>AAPSVTLFPPSSEELQANK</td>
3151
+ <td>LC(112-130)</td>
3152
+ <td>1985.0106</td>
3153
+ <td>-0.96</td>
3154
+ <td></td>
3155
+ </tr>
3156
+ <tr>
3157
+ <td>34.69</td>
3158
+ <td>4177.1399</td>
3159
+ <td>AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWK</td>
3160
+ <td>LC(112-150)</td>
3161
+ <td>4177.1446</td>
3162
+ <td>-1.11</td>
3163
+ <td></td>
3164
+ </tr>
3165
+ <tr>
3166
+ <td>33.08</td>
3167
+ <td>2210.1433</td>
3168
+ <td>ATLVCLISDFYPGAVTVAWK</td>
3169
+ <td>LC(131-150)</td>
3170
+ <td>2210.1446</td>
3171
+ <td>-0.59</td>
3172
+ <td></td>
3173
+ </tr>
3174
+ <tr>
3175
+ <td>10.21</td>
3176
+ <td>702.3546</td>
3177
+ <td>ADSSPVK</td>
3178
+ <td>LC(151-157)</td>
3179
+ <td>702.3548</td>
3180
+ <td>-0.26</td>
3181
+ <td></td>
3182
+ </tr>
3183
+ <tr>
3184
+ <td>11.55</td>
3185
+ <td>989.5026</td>
3186
+ <td>AGVETTTPSK</td>
3187
+ <td>LC(158-167)</td>
3188
+ <td>989.5029</td>
3189
+ <td>-0.31</td>
3190
+ <td></td>
3191
+ </tr>
3192
+ <tr>
3193
+ <td>1.96</td>
3194
+ <td>589.2812</td>
3195
+ <td>QSNNK</td>
3196
+ <td>LC(168-172)</td>
3197
+ <td>589.2820</td>
3198
+ <td>-1.34</td>
3199
+ <td></td>
3200
+ </tr>
3201
+ <tr>
3202
+ <td>24.35</td>
3203
+ <td>1742.8504</td>
3204
+ <td>YAASSYLSLTPEQWK</td>
3205
+ <td>LC(173-187)</td>
3206
+ <td>1742.8516</td>
3207
+ <td>-0.67</td>
3208
+ <td></td>
3209
+ </tr>
3210
+ <tr>
3211
+ <td>2.10</td>
3212
+ <td>398.2022</td>
3213
+ <td>SHR</td>
3214
+ <td>LC(188-190)</td>
3215
+ <td>398.2026</td>
3216
+ <td>-1.16</td>
3217
+ <td></td>
3218
+ </tr>
3219
+ <tr>
3220
+ <td>13.39</td>
3221
+ <td>1710.7512</td>
3222
+ <td>SYSCQVTHEGSTVEK</td>
3223
+ <td>LC(191-205)</td>
3224
+ <td>1710.7519</td>
3225
+ <td>-0.45</td>
3226
+ <td></td>
3227
+ </tr>
3228
+ <tr>
3229
+ <td>11.73</td>
3230
+ <td>863.3683</td>
3231
+ <td>TVAPTECS</td>
3232
+ <td>LC(206-213)</td>
3233
+ <td>863.3695</td>
3234
+ <td>-1.39</td>
3235
+ <td></td>
3236
+ </tr>
3237
+ </table>
3238
+
3239
+
3240
+ <figure>
3241
+
3242
+ RIC
3243
+
3244
+ </figure>
3245
+
3246
+
3247
+ <!-- PageFooter="biologics" -->
3248
+ <!-- PageNumber="25" -->
3249
+ <!-- PageBreak -->
3250
+
3251
+
3252
+ <figure>
3253
+ </figure>
3254
+
3255
+
3256
+ ## Results 18E2VL HIS LALA ABDEG - Identity
3257
+
3258
+
3259
+ ### >HEAVY CHAIN: 18E2VLHIS LALA ABDEG
3260
+
3261
+ EVOLLESGGGLVQPGGSLRLSCAASGFTFSSYVMSWVRQAPGKGLEWVSSIYHDGSHTYYADFVKGRFTISRDNSKNTLYLOMN
3262
+ SLRAEDTAVYYCAKGTSYSGSYYYTDPFFGSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN
3263
+ SGALTSGVHTFPAVLOSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPEAAGGPSVFLF
3264
+ PPKPKDTLYITREPEVTCVVVDVSHEDPEVKENWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA
3265
+ LPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLT
3266
+ VDKSRWQQGNVFSCSVMHEALKFHYTOKSLSLSPGK
3267
+
3268
+
3269
+ ### >LIGHT CHAIN: 18E2VLHIS LALA ABDEG
3270
+
3271
+ SSELTQDPAVSVALGQTVRITCQGDRLGSRYIHWYQQKPGQAPVLVIYDDDRRPSGIPDRFSGSSSGNTASLTITGAQAEDEAD
3272
+ YYCOSADSSGNPVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ
3273
+ SNNKYAASSYLSLTPEQWKSHRSYSCOVTHEGSTVEKTVAPTECS
3274
+
3275
+ Sequence coverage of 99.4%
3276
+
3277
+
3278
+ <figure>
3279
+
3280
+ RIC
3281
+
3282
+ </figure>
3283
+
3284
+
3285
+ <!-- PageFooter="biologics" -->
3286
+ <!-- PageNumber="26" -->
3287
+ <!-- PageBreak -->
3288
+
3289
+
3290
+ <figure>
3291
+ </figure>
3292
+
3293
+
3294
+ ## Results 18E2VL HIS LALA ABDEG - Modifications (oxidation)
3295
+
3296
+
3297
+ <table>
3298
+ <tr>
3299
+ <th>Sequence</th>
3300
+ <th>Seq Loc</th>
3301
+ <th>Modification</th>
3302
+ <th>18E2VL LALA ABDEG</th>
3303
+ <th>18E2VL LALA ABDEG T6w</th>
3304
+ </tr>
3305
+ <tr>
3306
+ <td>WQQGNVFSCSVMHEALK</td>
3307
+ <td>HC(426-442)</td>
3308
+ <td>Oxidation</td>
3309
+ <td>2.8 97.2</td>
3310
+ <td>13.3 86.7</td>
3311
+ </tr>
3312
+ </table>
3313
+
3314
+ BOLD: relevant increase upon stressing
3315
+ Note: Only modifications > 0.5% are reported
3316
+
3317
+
3318
+ <figure>
3319
+ </figure>
3320
+
3321
+
3322
+ RIC
3323
+ biologics
3324
+
3325
+ <!-- PageNumber="27" -->
3326
+ <!-- PageBreak -->
3327
+
3328
+
3329
+ <figure>
3330
+ </figure>
3331
+
3332
+
3333
+ ## Results 18E2VL HIS LALA ABDEG - Modifications (deam/isoD)
3334
+
3335
+
3336
+ <table>
3337
+ <tr>
3338
+ <th>Sequence</th>
3339
+ <th>Seq Loc</th>
3340
+ <th>Modification</th>
3341
+ <th>18E2VL LALA ABDEG</th>
3342
+ <th>18E2VL LALA ABDEG T6w</th>
3343
+ </tr>
3344
+ <tr>
3345
+ <td rowspan="2">EVQLLESGGGLVQPGGSLR</td>
3346
+ <td rowspan="2">HC(1-19)</td>
3347
+ <td>Deamidation</td>
3348
+ <td>2.4</td>
3349
+ <td>2.4</td>
3350
+ </tr>
3351
+ <tr>
3352
+ <td></td>
3353
+ <td>97.6</td>
3354
+ <td>97.6</td>
3355
+ </tr>
3356
+ <tr>
3357
+ <td rowspan="2">NTLYLQMNSLR</td>
3358
+ <td rowspan="2">HC(77-87)</td>
3359
+ <td rowspan="2">Deamidation</td>
3360
+ <td>1.9</td>
3361
+ <td>3.2</td>
3362
+ </tr>
3363
+ <tr>
3364
+ <td>98.1</td>
3365
+ <td>96.8</td>
3366
+ </tr>
3367
+ <tr>
3368
+ <td rowspan="2">FNWYVDGVEVHNAK</td>
3369
+ <td rowspan="2">HC(284-297)</td>
3370
+ <td>IsoD</td>
3371
+ <td>0.7</td>
3372
+ <td>1.7</td>
3373
+ </tr>
3374
+ <tr>
3375
+ <td></td>
3376
+ <td>99.3</td>
3377
+ <td>98.3</td>
3378
+ </tr>
3379
+ <tr>
3380
+ <td rowspan="3">VVSVLTVLHQDWLNGK</td>
3381
+ <td rowspan="3">HC(311-326)</td>
3382
+ <td>Deamidation</td>
3383
+ <td>0.7</td>
3384
+ <td>1.7</td>
3385
+ </tr>
3386
+ <tr>
3387
+ <td></td>
3388
+ <td>96.9</td>
3389
+ <td>95.8</td>
3390
+ </tr>
3391
+ <tr>
3392
+ <td>Succinimide</td>
3393
+ <td>2.4</td>
3394
+ <td>2.5</td>
3395
+ </tr>
3396
+ <tr>
3397
+ <td rowspan="2">NQVSLTCLVK</td>
3398
+ <td rowspan="2">HC(370-379)</td>
3399
+ <td>Deamidation</td>
3400
+ <td>3.7</td>
3401
+ <td>5.9</td>
3402
+ </tr>
3403
+ <tr>
3404
+ <td></td>
3405
+ <td>96.3</td>
3406
+ <td>94.1</td>
3407
+ </tr>
3408
+ <tr>
3409
+ <td rowspan="2">GFYPSDIAVEWESNGQPENNYK</td>
3410
+ <td rowspan="2">HC(380-401)</td>
3411
+ <td rowspan="2">Deamidation</td>
3412
+ <td>6.9</td>
3413
+ <td>27.4</td>
3414
+ </tr>
3415
+ <tr>
3416
+ <td>93.1</td>
3417
+ <td>72.6</td>
3418
+ </tr>
3419
+ <tr>
3420
+ <td>TTPPVLDSDGSFFLYSK</td>
3421
+ <td>HC(402-418)</td>
3422
+ <td>IsoD</td>
3423
+ <td>1.0 99.0</td>
3424
+ <td>1.5 98.5</td>
3425
+ </tr>
3426
+ </table>
3427
+
3428
+ BOLD: relevant increase upon stressing
3429
+
3430
+ Note: Only modifications > 0.5% are reported
3431
+
3432
+
3433
+ <figure>
3434
+ </figure>
3435
+
3436
+
3437
+ RIC
3438
+ biologics
3439
+
3440
+ <!-- PageNumber="28" -->
3441
+ <!-- PageBreak -->
3442
+
3443
+
3444
+ <figure>
3445
+ </figure>
3446
+
3447
+
3448
+ <!-- PageHeader="Results 18E2VL HIS LALA ABDEG - Modifications (pyroE)" -->
3449
+
3450
+
3451
+ <table>
3452
+ <tr>
3453
+ <th>Sequence</th>
3454
+ <th>Seq Loc</th>
3455
+ <th>Modification</th>
3456
+ <th>18E2VL LALA ABDEG</th>
3457
+ <th>18E2VL LALA ABDEG T6w</th>
3458
+ </tr>
3459
+ <tr>
3460
+ <td>EVQLLESGGGLVQPGGSLR</td>
3461
+ <td>HC(1-19)</td>
3462
+ <td>PyroE</td>
3463
+ <td>2.1 97.9</td>
3464
+ <td>11.1 88.9</td>
3465
+ </tr>
3466
+ </table>
3467
+
3468
+
3469
+ <figure>
3470
+
3471
+ RIC
3472
+
3473
+ </figure>
3474
+
3475
+
3476
+ <!-- PageFooter="biologics" -->
3477
+ <!-- PageNumber="29" -->
3478
+ <!-- PageBreak -->
3479
+
3480
+
3481
+ <figure>
3482
+ </figure>
3483
+
3484
+
3485
+ ## Results 18E2VL HIS LALA ABDEG - Modifications
3486
+
3487
+
3488
+ ### >HEAVY CHAIN: 18E2VLHIS
3489
+
3490
+ EVOLLESGGGLVQPGGSLRLSCAASGFTFSSYVMSWVRQAPGKGLEWVSSIYHDGSHTYYADFVKGRFTISRDNSKNTLYLQMN
3491
+ SLRAEDTAVYYCAKGTSYSGSYYYTDPFFGSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN
3492
+ SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPEAAGGPSVFLF
3493
+ PPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA
3494
+ LPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLT
3495
+ VDKSRWQQGNVFSCSVMHEALKFHYTQKSLSLSPGK
3496
+
3497
+
3498
+ ### >LIGHT CHAIN : 18E2VLHIS
3499
+
3500
+ SSELTQDPAVSVALGQTVRITCQGDRLGSRYIHWYQQKPGQAPVLVIYDDDRRPSGIPDRFSGSSSGNTASLTITGAQAEDEAD
3501
+ YYCOSADSSGNPVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ
3502
+ SNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
3503
+
3504
+
3505
+ <figure>
3506
+
3507
+ RIC
3508
+
3509
+ </figure>
3510
+
3511
+
3512
+ <!-- PageFooter="biologics" -->
3513
+ <!-- PageNumber="30" -->
3514
+ <!-- PageBreak -->
3515
+
3516
+
3517
+ <figure>
3518
+ </figure>
3519
+
3520
+
3521
+ ## Conclusions
3522
+
3523
+ · Near complete sequence coverage obtained for all molecules studied
3524
+
3525
+ . Nevertheless, partially digested material observed in samples 18E2HIS2-ABDEG and 18E2VLHIS-LALA-
3526
+ ABDEG (not hampering data interpretation)
3527
+
3528
+ · Peptide mapping of Ligelizumab mAB 37reveals
3529
+
3530
+ · 4 sites prone to oxidation upon stressing of which three located in the variable part of the heavy chain
3531
+
3532
+ · 1 site located in the conserved region of the heavy chain prone to deamidation upon stressing
3533
+
3534
+ · Heavy chain N-terminus is fully cyclic (pyroE) and C-terminus predominantly lysine truncated
3535
+
3536
+ · Peptide mapping of 18E2HIS2-ABDEG and 18E2VLHIS-LALA-ABDEG reveals
3537
+
3538
+ · 1 site located in the conserved region of the heavy chain prone to oxidation upon stressing
3539
+
3540
+ · 1 site located in the conserved region of the heavy chain prone to deamidation upon stressing
3541
+
3542
+ · Partial cyclization of the heavy chain N-terminus observed upon stressing
3543
+
3544
+ · No major liabilities detected in the CDRs upon stressing
3545
+
3546
+ · Peptide mapping of OMA VH15G55H VL3S31H reveals
3547
+
3548
+ · Complete degradation upon storage
3549
+
3550
+
3551
+ <figure>
3552
+
3553
+ RIC
3554
+
3555
+ </figure>
3556
+
3557
+
3558
+ <!-- PageFooter="biologics" -->
3559
+ <!-- PageNumber="31" -->
3560
+ <!-- PageBreak -->
3561
+
3562
+
3563
+ <figure>
3564
+ </figure>
3565
+
3566
+
3567
+ ## Signature section RIC
3568
+
3569
+
3570
+ ### Author
3571
+
3572
+
3573
+ <table>
3574
+ <tr>
3575
+ <td>Gianni Vandenborre</td>
3576
+ <td>Date: 15 FEB 2021</td>
3577
+ </tr>
3578
+ <tr>
3579
+ <td>Sr Scientist Biologics | Project Manager</td>
3580
+ <td>10 Signature:</td>
3581
+ </tr>
3582
+ <tr>
3583
+ <td colspan="2">Reviewer</td>
3584
+ </tr>
3585
+ <tr>
3586
+ <td>An Cerdobbel Ph.D.</td>
3587
+ <td>Date: 16 FEB 2021</td>
3588
+ </tr>
3589
+ <tr>
3590
+ <td>Head of Biologics Department</td>
3591
+ <td>Signature: Cedobre</td>
3592
+ </tr>
3593
+ <tr>
3594
+ <td colspan="2">Approver</td>
3595
+ </tr>
3596
+ <tr>
3597
+ <td>Koen Sandra Ph.D.</td>
3598
+ <td>Date: 1 MAR 2021</td>
3599
+ </tr>
3600
+ <tr>
3601
+ <td>Scientific Director</td>
3602
+ <td>Signature:</td>
3603
+ </tr>
3604
+ </table>
3605
+
3606
+
3607
+ <figure>
3608
+
3609
+ RIC
3610
+
3611
+ </figure>
3612
+
3613
+
3614
+ <!-- PageFooter="biologics" -->
3615
+ <!-- PageNumber="32" -->
3616
+ <!-- PageBreak -->
3617
+
3618
+
3619
+ <figure>
3620
+ </figure>
3621
+
3622
+
3623
+ # Version control
3624
+
3625
+
3626
+ <table>
3627
+ <tr>
3628
+ <th>Version</th>
3629
+ <th>Date of issue</th>
3630
+ <th>Reason for version update</th>
3631
+ </tr>
3632
+ <tr>
3633
+ <td>01</td>
3634
+ <td>30-JUL-2020</td>
3635
+ <td>First issue</td>
3636
+ </tr>
3637
+ </table>
3638
+
3639
+
3640
+ <figure>
3641
+
3642
+ <!-- PageFooter="RIC" -->
3643
+
3644
+ </figure>
3645
+
3646
+
3647
+ <!-- PageFooter="biologics" -->
3648
+ <!-- PageNumber="33" -->
3649
+ <!-- PageBreak -->
3650
+
3651
+
3652
+ <figure>
3653
+
3654
+ RIC
3655
+
3656
+ biologics
3657
+
3658
+ </figure>
3659
+
3660
+
3661
+ YOUR MOLECULE. OUR ANALYTICS. NO SECRETS.
3662
+
3663
+ <!-- PageFooter="www.RICbiologics.com" -->
logs/di_content/di_content_20250604_141118.txt ADDED
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1
+ # ARGX DISCOVERY: EVALUATION OF LIABILITIES IN VH AND VL REGION OF TWO CONSTRUCTS
2
+
3
+ Argenx - P3016_R04_v01
4
+
5
+
6
+ <figure>
7
+
8
+ RIC
9
+
10
+ biologics
11
+
12
+ </figure>
13
+
14
+
15
+ <!-- PageBreak -->
16
+
17
+
18
+ <figure>
19
+ </figure>
20
+
21
+
22
+ <!-- PageHeader="Table of contents" -->
23
+
24
+ l Project information
25
+
26
+ Scope
27
+
28
+ l Test samples
29
+
30
+ l
31
+ Method
32
+
33
+ l
34
+ Results
35
+
36
+ · P052_OA-02A10-GLLiab4His1_0-hlgG1-CH2-CH3-LALAPG-ABDEG-FJB_2024-01-
37
+ 26_002
38
+
39
+ · P052_OA-02A10-GLLiab4+Liab11-His1_0-hlgG1-CH2-CH3-LALAPG-ABDEG-
40
+ FJB_2024-01-26_001
41
+
42
+ l
43
+ Conclusions
44
+
45
+
46
+ <figure>
47
+
48
+ RIC
49
+
50
+ </figure>
51
+
52
+
53
+ <!-- PageFooter="biologics" -->
54
+ <!-- PageNumber="2" -->
55
+ <!-- PageBreak -->
56
+
57
+
58
+ <figure>
59
+ </figure>
60
+
61
+
62
+ ## Project information
63
+
64
+
65
+ <table>
66
+ <tr>
67
+ <td>Sales quote:</td>
68
+ <td>SQ20202722</td>
69
+ </tr>
70
+ <tr>
71
+ <td>l Project code:</td>
72
+ <td>P3016</td>
73
+ </tr>
74
+ <tr>
75
+ <td>l LNB number:</td>
76
+ <td>2023.040</td>
77
+ </tr>
78
+ <tr>
79
+ <td>l Project responsible:</td>
80
+ <td>Nathan Cardon</td>
81
+ </tr>
82
+ <tr>
83
+ <td>l Report name:</td>
84
+ <td>P3016_R04_v01</td>
85
+ </tr>
86
+ </table>
87
+
88
+
89
+ <figure>
90
+
91
+ RIC
92
+
93
+ </figure>
94
+
95
+
96
+ <!-- PageFooter="biologics" -->
97
+ <!-- PageNumber="3" -->
98
+ <!-- PageBreak -->
99
+
100
+
101
+ <figure>
102
+ </figure>
103
+
104
+
105
+ Scope
106
+
107
+ l This report describes the results of a liability assessment for two Argenx
108
+ discovery constructs. Non-stressed and temperature-stressed samples
109
+ stored for four weeks at 37℃ were evaluated by reduced protein RPLC-UV-
110
+ MS and peptide map analysis.
111
+
112
+
113
+ <figure>
114
+
115
+ RIC
116
+
117
+ </figure>
118
+
119
+
120
+ <!-- PageFooter="biologics" -->
121
+ <!-- PageNumber="4" -->
122
+ <!-- PageBreak -->
123
+
124
+
125
+ <figure>
126
+ </figure>
127
+
128
+
129
+ ## Test samples
130
+
131
+ The samples used in this study are listed below
132
+
133
+
134
+ <table>
135
+ <tr>
136
+ <th>Construct</th>
137
+ <th>Storage condition</th>
138
+ <th>Concentration (mg/ml)</th>
139
+ </tr>
140
+ <tr>
141
+ <td rowspan="2">P052_OA-02A10-GLLiab4His1_0-hIgG1-CH2- CH3-LALAPG-ABDEG-FJB_2024-01-26_002</td>
142
+ <td>T0</td>
143
+ <td>1.0</td>
144
+ </tr>
145
+ <tr>
146
+ <td>T4w 37°℃</td>
147
+ <td>1.0</td>
148
+ </tr>
149
+ <tr>
150
+ <td rowspan="2">P052_OA-02A10-GLLiab4+Liab11-His1_0- hIgG1-CH2-CH3-LALAPG-ABDEG-FJB_2024- 01-26_001</td>
151
+ <td>T0</td>
152
+ <td>1.0</td>
153
+ </tr>
154
+ <tr>
155
+ <td>T4w 37℃</td>
156
+ <td>1.0</td>
157
+ </tr>
158
+ </table>
159
+
160
+
161
+ Note: all antibodies are in an One-Armed (OA) format
162
+
163
+
164
+ <figure>
165
+
166
+ RIC
167
+
168
+ </figure>
169
+
170
+
171
+ <!-- PageFooter="biologics" -->
172
+ <!-- PageNumber="5" -->
173
+ <!-- PageBreak -->
174
+
175
+
176
+ <figure>
177
+ </figure>
178
+
179
+
180
+ ## Method: Protein analysis by RPLC-(UV)-MS
181
+
182
+ l The samples were reduced by incubation with DTT while in denaturing
183
+ conditions. The samples were analyzed using a C8 RPLC column on a 1290
184
+ Infinity UHPLC system coupled to a 6530 Q-TOF mass spectrometer (both
185
+ from Agilent Technologies).
186
+
187
+ l RPLC was performed with trifluoroacetic acid (TFA) as ion pairing additive,
188
+ and with H2O and acetonitrile as mobile phases.
189
+
190
+ l Data acquisition and processing were performed with BioConfirm
191
+ MassHunter 7.0 (Agilent Technologies). UV 280 nm and MS data were
192
+ acquired simultaneously.
193
+
194
+
195
+ <figure>
196
+
197
+ RIC
198
+
199
+ </figure>
200
+
201
+
202
+ <!-- PageFooter="biologics" -->
203
+ <!-- PageNumber="6" -->
204
+ <!-- PageBreak -->
205
+
206
+
207
+ <figure>
208
+ </figure>
209
+
210
+
211
+ ## Method: Peptide map analysis in reducing conditions
212
+
213
+ l
214
+ Prior to digestion, the samples were reduced using dithiothreitol (DTT), and alkylated
215
+ with iodoacetamide (IAA). The samples were digested using trypsin as protease.
216
+
217
+ l The digests were analyzed on RPLC-MS using a C18 RPLC column. RPLC was performed
218
+ with formic acid (FA) as additive, and with H2O and acetonitrile as mobile phases. The
219
+ analyses were performed on a 1290 Infinity UHPLC system (Agilent Technologies) coupled
220
+ to a 6540 Q-TOF Mass Spectrometer (Agilent Technologies) operated in MS and MS/MS
221
+ mode.
222
+
223
+ l Data processing was performed using BioConfirm 10.0 and MassHunter 7.0 (Agilent
224
+ Technologies).
225
+
226
+ l Measured signals were matched onto the sequence. Identification was based primarily
227
+ on MS-only data. Enzyme specified was trypsin (C-terminal cleavage at lysine or arginine)
228
+ and 0-2 missed cleavages were allowed. N-terminal cyclization (pyroglutamate from E/Q),
229
+ D isomerization, N/Q deamidation, M/W oxidation and N-glycosylation were considered
230
+ as variable modifications while cysteine carbamidomethylation (sample preparation
231
+ related) was considered as fixed modification. Peak areas from extracted ion
232
+ chromatograms (EICs) were used for quantifying modifications.
233
+
234
+ l Note that peptide map data processing was focused on the variable regions of the
235
+ constructs.
236
+
237
+
238
+ <figure>
239
+
240
+ RIC
241
+
242
+ </figure>
243
+
244
+
245
+ biologics
246
+
247
+ <!-- PageNumber="7" -->
248
+ <!-- PageBreak -->
249
+
250
+
251
+ <figure>
252
+ </figure>
253
+
254
+
255
+ P052_OA-02A10-GLLIAB4HIS1_0-HIGG1-CH2-CH3-LALAPG-ABDEG-
256
+ FJB_2024-01-26_002
257
+
258
+ <!-- PageBreak -->
259
+
260
+
261
+ <figure>
262
+ </figure>
263
+
264
+
265
+ ## Results: AA sequence
266
+
267
+ l
268
+
269
+ AA sequence of GLLiab4_Heavy_Knob_LALAPG_ABDEG (MW (G0F): 50740.4 Da)
270
+
271
+ EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYVMSWVRQAPGKGLEWVSHIQGGGITSYADSVKGRFTISRDNSKNTLYLQ
272
+ MNSLRAEDTAVYYCAKWLVDYGLGNRGSMDYWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV
273
+ SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPEAAGGPS
274
+ VFLFPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKC
275
+ KVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLWCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSF
276
+ FLYSKLTVDKSRWQQGNVFSCSVMHEALKFHYTQKSLSLSPG
277
+
278
+ l AA sequence of GLHis1_Light_CL1 (MW (pyroQ): 23646.43 Da)
279
+
280
+ QAVLTQPPSLSASPGASARLTCSLSSGTIVHGYHINWYQQKAGSPPRYLLRFYSDSNKHQGSGVPSRFSGSKDASANAGILLIS
281
+ GLQPEDEADYYCGTYHSNTGTYVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK
282
+ AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
283
+
284
+ l AA sequence of CH2_CH3_Hole_LALAPG_ABDEG (MW (G0F) 26719.1 Da)
285
+
286
+ DKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV
287
+ VSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLSCAVKGFYPSDIAVEWESNG
288
+ QPENNYKTTPPVLDSDGSFFLVSKLTVDKSRWQQGNVFSCSVMHEALKFHYTQKSLSLS
289
+
290
+
291
+ <figure>
292
+
293
+ RIC
294
+
295
+ <!-- PageFooter="biologics" -->
296
+
297
+ </figure>
298
+
299
+
300
+ <table>
301
+ <tr>
302
+ <td>Blue:</td>
303
+ <td>VH and VL</td>
304
+ </tr>
305
+ <tr>
306
+ <td>Green:</td>
307
+ <td>N-glycosylation site</td>
308
+ </tr>
309
+ <tr>
310
+ <td>Red:</td>
311
+ <td>N-terminal cyclization</td>
312
+ </tr>
313
+ </table>
314
+
315
+
316
+ <!-- PageNumber="9" -->
317
+ <!-- PageBreak -->
318
+
319
+
320
+ <figure>
321
+ </figure>
322
+
323
+
324
+ ## Results: reduced RPLC-UV-MS
325
+
326
+
327
+ ### l
328
+
329
+
330
+ #### Overlays of the UV214nm profiles
331
+
332
+
333
+ <figure>
334
+
335
+ x10 2
336
+
337
+ DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P3016_Molecule1_W0_C8_19MAR2024.d
338
+
339
+ HC_Knob
340
+
341
+ 6.5
342
+
343
+ T0
344
+
345
+ 6
346
+
347
+ T4w 37℃
348
+
349
+ x: Unknown fragment (13463 Da)
350
+
351
+ 0: GG clip (G144-G452)
352
+
353
+ 6
354
+
355
+ Hole
356
+
357
+ y: Intact LC without pyroQ
358
+
359
+ 1: GG clip (G55-G452)
360
+
361
+ 5.5
362
+
363
+ z: Intact LC (pyroQ) + LC fragments:
364
+
365
+ 2: NS clip (73-452)
366
+
367
+ 5
368
+
369
+ b
370
+
371
+ LC
372
+
373
+ N terminal Q loss
374
+
375
+ 3: - 17 Da (potentially HC +
376
+ succinimide)
377
+
378
+ C-terminal S loss
379
+
380
+ 4.5
381
+
382
+ a: M oxidation: Hydroxy-y-lactam
383
+
384
+ z
385
+
386
+ b: Intact Hole
387
+
388
+ C-terminal CS loss
389
+
390
+ 4: Traces oxidation (+32 Da)
391
+
392
+ 5: Oxidation (+16Da)
393
+
394
+ 4
395
+
396
+ c: N-terminal DK loss
397
+
398
+ 6: Intact HC_knob
399
+
400
+ 3.5
401
+
402
+ 7: PyroE
403
+
404
+ 8: DP clip (E1-D276)
405
+
406
+ 3
407
+
408
+ 2.5
409
+
410
+ 2
411
+
412
+ Unknown fragment*
413
+
414
+ 7
415
+
416
+ 1.5
417
+
418
+ 1
419
+
420
+ c
421
+
422
+ 0.5
423
+
424
+ x
425
+
426
+ 5
427
+
428
+ a
429
+
430
+ y
431
+
432
+ 0
433
+
434
+ 1
435
+
436
+ 2
437
+
438
+ 3
439
+
440
+ 4
441
+
442
+ 8
443
+
444
+ 0
445
+
446
+ 2
447
+
448
+ 3
449
+
450
+ 4
451
+
452
+ 5
453
+
454
+ 6
455
+
456
+ 7
457
+
458
+ 8
459
+
460
+ 9
461
+
462
+ 10
463
+
464
+ Response Units vs. Acquisition Time (min)
465
+
466
+ 11
467
+
468
+ 12
469
+
470
+ 13
471
+
472
+ 14
473
+
474
+ 15
475
+
476
+ 16
477
+
478
+ 17
479
+
480
+ 18
481
+
482
+ 19
483
+
484
+ 20
485
+
486
+ 21
487
+
488
+ 22
489
+
490
+ 23
491
+
492
+ 24
493
+
494
+ </figure>
495
+
496
+ \* No MS data for this peak (falls outside the
497
+ measurement window)
498
+
499
+ Color legend:
500
+
501
+ Black: clear identity on RPLC-UV-MS
502
+
503
+ Blue: modification with clear trend visible on RPLC-UV-MS
504
+ Blue: modification in variable region also confirmed in peptide
505
+ mapping
506
+
507
+
508
+ Grey: most likely method induced modification
509
+
510
+
511
+ <figure>
512
+ </figure>
513
+
514
+
515
+ RIC
516
+
517
+ <!-- PageFooter="biologics" -->
518
+ <!-- PageNumber="10" -->
519
+ <!-- PageBreak -->
520
+
521
+
522
+ <figure>
523
+ </figure>
524
+
525
+
526
+ ## Results: reduced RPLC-UV-MS
527
+
528
+
529
+ ### l Deconvoluted spectra of Hole, LC and HC_Knob (peak b, peak z and peak 6)
530
+
531
+ ×10 6
532
+
533
+ +ESI Scan (rt: 9.2-10.1 min, 89 scans) Frag=200.0V P3016_Molecule1_W0_C8_19MAR2024.d Deconvoluted (Isotope Width=10.0)
534
+
535
+ 1.25
536
+
537
+ 26717.06
538
+
539
+ Theoretical mass Hole (G0F): 26719.1 Da
540
+
541
+ 1
542
+
543
+ 0.75
544
+
545
+ 0.5
546
+
547
+ 0.25
548
+
549
+ 0
550
+
551
+ 21343.69
552
+
553
+ LL
554
+
555
+ 32883.11
556
+
557
+ +ESI Scan (rt: 12.9-13.5 min, 60 scans) Frag=200.0V P3016_Molecule1_W0_C8_19MAR2024.d Deconvoluted (Isotope Width=10.0)
558
+
559
+ ×10 6
560
+
561
+ 2.5
562
+
563
+ 23644.69
564
+
565
+ Theoretical mass LC (pyroQ): 23646.4 Da
566
+
567
+ 2
568
+
569
+ 1.5
570
+
571
+ 1
572
+
573
+ 0.5
574
+
575
+ 15375.35
576
+
577
+ 25932.56
578
+
579
+ 30286.33
580
+
581
+ 0
582
+
583
+ x10 5
584
+
585
+ +ESI Scan (rt: 16.4-21.6 min, 519 scans) Frag=200.0V P3016_Molecule1_W0_C8_19MAR2024.d Deconvoluted (Isotope Width=14.1)
586
+
587
+
588
+ <figure>
589
+
590
+ Theoretical mass HC_knob (G0F): 50740.4 Da
591
+
592
+ 50736.55
593
+
594
+ 0.8
595
+
596
+ 0.6
597
+
598
+ 0.4
599
+
600
+ 0.2
601
+
602
+ 0
603
+
604
+ 43809.72
605
+
606
+ 58410.62
607
+
608
+ 10000
609
+
610
+ 12500
611
+
612
+ 15000
613
+
614
+ 17500
615
+
616
+ 20000
617
+
618
+ 22500
619
+
620
+ 25000
621
+
622
+ 27500 30000
623
+
624
+ 32500 35000 375
625
+ 37500
626
+
627
+ Counts vs. Deconvoluted Mass (amu)
628
+
629
+ 40000
630
+
631
+ 42500
632
+
633
+ 45000
634
+
635
+ 47500
636
+
637
+ 50000
638
+
639
+ 52500
640
+
641
+ 55000
642
+
643
+ 57500
644
+
645
+ 60000
646
+
647
+ </figure>
648
+
649
+
650
+ <figure>
651
+
652
+ RIC
653
+
654
+ </figure>
655
+
656
+
657
+ <!-- PageFooter="biologics" -->
658
+ <!-- PageNumber="11" -->
659
+ <!-- PageBreak -->
660
+
661
+
662
+ <figure>
663
+ </figure>
664
+
665
+
666
+ ## Results: tryptic peptide map
667
+
668
+
669
+ ### l N-terminal and C-terminal modifications for HC_Knob and LC
670
+
671
+
672
+ <table>
673
+ <tr>
674
+ <th colspan="5">Relative quantification by EIC (%)</th>
675
+ </tr>
676
+ <tr>
677
+ <th>AA Sequence</th>
678
+ <th>Seq Loc</th>
679
+ <th>Modification</th>
680
+ <th>T0</th>
681
+ <th>T4w37℃</th>
682
+ </tr>
683
+ <tr>
684
+ <td rowspan="2">EVOLVESGGGLVQPGGSLR</td>
685
+ <td rowspan="2">HC(1-19)</td>
686
+ <td></td>
687
+ <td>98.8</td>
688
+ <td>89.1</td>
689
+ </tr>
690
+ <tr>
691
+ <td>PyroE</td>
692
+ <td>1.2</td>
693
+ <td>10.9</td>
694
+ </tr>
695
+ <tr>
696
+ <td rowspan="3">QAVLTQPPSLSASPGASAR</td>
697
+ <td rowspan="3">LC(1-19)</td>
698
+ <td></td>
699
+ <td>3.3</td>
700
+ <td>0.0</td>
701
+ </tr>
702
+ <tr>
703
+ <td>PyroQ</td>
704
+ <td>96.7</td>
705
+ <td>99.7</td>
706
+ </tr>
707
+ <tr>
708
+ <td>N terminal Q loss</td>
709
+ <td>0.0</td>
710
+ <td>0.3</td>
711
+ </tr>
712
+ <tr>
713
+ <td rowspan="3">TVAPTECS</td>
714
+ <td rowspan="3">LC(216-223)</td>
715
+ <td></td>
716
+ <td>100.0</td>
717
+ <td>99.6</td>
718
+ </tr>
719
+ <tr>
720
+ <td>S loss</td>
721
+ <td>0.0</td>
722
+ <td>0.2</td>
723
+ </tr>
724
+ <tr>
725
+ <td>CS loss</td>
726
+ <td>0.0</td>
727
+ <td>0.2</td>
728
+ </tr>
729
+ </table>
730
+
731
+
732
+ For information purposes the following color code is applied: Values showing an increase or decrease by
733
+ between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
734
+ increase of more than 10.0% compared to T0 are in red, bold and underlined.
735
+
736
+
737
+ <figure>
738
+
739
+ RIC
740
+
741
+ </figure>
742
+
743
+
744
+ <!-- PageFooter="biologics" -->
745
+ <!-- PageNumber="12" -->
746
+ <!-- PageBreak -->
747
+
748
+
749
+ <figure>
750
+ </figure>
751
+
752
+
753
+ ## Results: tryptic peptide map
754
+
755
+
756
+ ### l M/W oxidations in variable parts of HC_Knob and LC
757
+
758
+
759
+ <table>
760
+ <tr>
761
+ <th colspan="5">Relative quantification by EIC (%)</th>
762
+ </tr>
763
+ <tr>
764
+ <th>AA Sequence</th>
765
+ <th>Seq Loc</th>
766
+ <th>Modification</th>
767
+ <th>T0</th>
768
+ <th>T4w37℃</th>
769
+ </tr>
770
+ <tr>
771
+ <td rowspan="2">LSCAASGFTFSSYVMSWVR</td>
772
+ <td rowspan="2">HC(20-38)</td>
773
+ <td></td>
774
+ <td>97.1</td>
775
+ <td>96.1</td>
776
+ </tr>
777
+ <tr>
778
+ <td>Oxidation</td>
779
+ <td>2.9</td>
780
+ <td>3.9</td>
781
+ </tr>
782
+ <tr>
783
+ <td rowspan="2">NTLYLQMNSLR</td>
784
+ <td rowspan="2">HC(76-86)</td>
785
+ <td></td>
786
+ <td>98.3</td>
787
+ <td>97.8</td>
788
+ </tr>
789
+ <tr>
790
+ <td>Oxidation</td>
791
+ <td>1.7</td>
792
+ <td>2.2</td>
793
+ </tr>
794
+ <tr>
795
+ <td rowspan="4">WLVDYGLGNR</td>
796
+ <td rowspan="4">HC (098-107)</td>
797
+ <td></td>
798
+ <td>100.0</td>
799
+ <td>97.2</td>
800
+ </tr>
801
+ <tr>
802
+ <td>Oxidation</td>
803
+ <td>0.0</td>
804
+ <td>0.8</td>
805
+ </tr>
806
+ <tr>
807
+ <td>Double oxidation</td>
808
+ <td>0.0</td>
809
+ <td>0.5</td>
810
+ </tr>
811
+ <tr>
812
+ <td>+ 4 (Kynurenine)</td>
813
+ <td>0.0</td>
814
+ <td>1.5</td>
815
+ </tr>
816
+ <tr>
817
+ <td rowspan="2">GSMDYWGQGTTVTVSSASTK</td>
818
+ <td rowspan="2">HC(108-127)</td>
819
+ <td></td>
820
+ <td>97.1</td>
821
+ <td>96.2</td>
822
+ </tr>
823
+ <tr>
824
+ <td>Oxidation</td>
825
+ <td>3.1</td>
826
+ <td>4.3</td>
827
+ </tr>
828
+ </table>
829
+
830
+
831
+ For information purposes the following color code is applied: Values showing an increase or decrease by
832
+ between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
833
+ increase of more than 10.0% compared to T0 are in red, bold and underlined.
834
+
835
+
836
+ <figure>
837
+
838
+ RIC
839
+
840
+ biologics
841
+
842
+ </figure>
843
+
844
+
845
+ <!-- PageNumber="13" -->
846
+ <!-- PageBreak -->
847
+
848
+
849
+ <figure>
850
+ </figure>
851
+
852
+
853
+ ## Results: tryptic peptide map
854
+
855
+
856
+ ### l N/Q deamidation in variable parts of HC_Knob and LC
857
+
858
+
859
+ <table>
860
+ <tr>
861
+ <th colspan="5">Relative quantification by EIC (%)</th>
862
+ </tr>
863
+ <tr>
864
+ <th>AA Sequence</th>
865
+ <th>Seq Loc</th>
866
+ <th>Modification</th>
867
+ <th>T0</th>
868
+ <th>T4w 37℃</th>
869
+ </tr>
870
+ <tr>
871
+ <td rowspan="2">GLEWVSHIQGGGITSYADSVK</td>
872
+ <td rowspan="2">HC(44-64)</td>
873
+ <td></td>
874
+ <td>99.4</td>
875
+ <td>96.3</td>
876
+ </tr>
877
+ <tr>
878
+ <td>deamidation</td>
879
+ <td>0.6</td>
880
+ <td>3.7</td>
881
+ </tr>
882
+ <tr>
883
+ <td rowspan="2">DNSKNTLYLQMNSLR*</td>
884
+ <td rowspan="2">HC(72-86)</td>
885
+ <td></td>
886
+ <td>98.6</td>
887
+ <td>98.5</td>
888
+ </tr>
889
+ <tr>
890
+ <td>deamidation</td>
891
+ <td>1.4</td>
892
+ <td>1.5</td>
893
+ </tr>
894
+ <tr>
895
+ <td rowspan="2">NTLYLQMNSLR</td>
896
+ <td rowspan="2">HC(76-86)</td>
897
+ <td></td>
898
+ <td>99.2</td>
899
+ <td>99.1</td>
900
+ </tr>
901
+ <tr>
902
+ <td>deamidation</td>
903
+ <td>0.8</td>
904
+ <td>0.9</td>
905
+ </tr>
906
+ <tr>
907
+ <td rowspan="2">WLVDYGLGNR</td>
908
+ <td rowspan="2">HC(98-107)</td>
909
+ <td></td>
910
+ <td>99.8</td>
911
+ <td>98.6</td>
912
+ </tr>
913
+ <tr>
914
+ <td>deamidation</td>
915
+ <td>0.2</td>
916
+ <td>1.4</td>
917
+ </tr>
918
+ <tr>
919
+ <td rowspan="2">DASANAGILLISGLQPEDEADYYCGTYHSNT GTYVFGGGTK</td>
920
+ <td rowspan="2">LC(73-113)</td>
921
+ <td></td>
922
+ <td>97.7</td>
923
+ <td>95.9</td>
924
+ </tr>
925
+ <tr>
926
+ <td>deamidation</td>
927
+ <td>2.3</td>
928
+ <td>4.1</td>
929
+ </tr>
930
+ </table>
931
+
932
+ *The deamidation level on the misscleaved peptide was checked as the peptide DNSK has bad retention to have a reliable
933
+ quantification. However, the misscleaved peptide has low abundance which can also lead to unreliable quantification of
934
+ modifications.
935
+
936
+
937
+ <figure>
938
+
939
+ RIC
940
+
941
+ </figure>
942
+
943
+
944
+ biologics
945
+
946
+ For information purposes the following color code is applied: Values showing an increase or decrease by
947
+ between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
948
+ increase of more than 10.0% compared to T0 are in red, bold and underlined.
949
+
950
+ <!-- PageNumber="14" -->
951
+ <!-- PageBreak -->
952
+
953
+
954
+ <figure>
955
+ </figure>
956
+
957
+
958
+ ## Results: tryptic peptide map
959
+
960
+
961
+ ### l Isomerization events in variable parts of HC_Knob and LC
962
+
963
+
964
+ <table>
965
+ <tr>
966
+ <th colspan="5">Relative quantification by EIC (%)</th>
967
+ </tr>
968
+ <tr>
969
+ <th>AA Sequence</th>
970
+ <th>Seq Loc</th>
971
+ <th>Modification</th>
972
+ <th>T0</th>
973
+ <th>T4w 37℃</th>
974
+ </tr>
975
+ <tr>
976
+ <td rowspan="2">WLVDYGLGNR</td>
977
+ <td rowspan="2">HC(98-107)</td>
978
+ <td></td>
979
+ <td>99.7</td>
980
+ <td>97.5</td>
981
+ </tr>
982
+ <tr>
983
+ <td>isomerization</td>
984
+ <td>0.3</td>
985
+ <td>2.5</td>
986
+ </tr>
987
+ </table>
988
+
989
+
990
+ For information purposes the following color code is applied: Values showing an increase or decrease by
991
+ between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
992
+ increase of more than 10.0% compared to T0 are in red, bold and underlined.
993
+
994
+
995
+ <figure>
996
+
997
+ RIC
998
+
999
+ </figure>
1000
+
1001
+
1002
+ biologics
1003
+
1004
+ <!-- PageNumber="15" -->
1005
+ <!-- PageBreak -->
1006
+
1007
+
1008
+ <figure>
1009
+ </figure>
1010
+
1011
+
1012
+ ## Results: tryptic peptide map
1013
+
1014
+
1015
+ ### l Clipping events in variable parts of HC_Knob and LC
1016
+
1017
+
1018
+ <table>
1019
+ <tr>
1020
+ <th colspan="5">Relative quantification by EIC (%)</th>
1021
+ </tr>
1022
+ <tr>
1023
+ <th>AA Sequence</th>
1024
+ <th>Seq Loc</th>
1025
+ <th>Modification</th>
1026
+ <th>T0</th>
1027
+ <th>T4w 37℃</th>
1028
+ </tr>
1029
+ <tr>
1030
+ <td>GLEWVSHIQGGGITSYADSVK</td>
1031
+ <td>HC(44-64)</td>
1032
+ <td></td>
1033
+ <td>100.0</td>
1034
+ <td>99.7</td>
1035
+ </tr>
1036
+ <tr>
1037
+ <td>GLEWVSHIQGG</td>
1038
+ <td>HC(44-54)</td>
1039
+ <td rowspan="2">GG clip</td>
1040
+ <td>0.0</td>
1041
+ <td>0.3*</td>
1042
+ </tr>
1043
+ <tr>
1044
+ <td>GITSYADSVK</td>
1045
+ <td>HC(55-64)</td>
1046
+ <td>0.0</td>
1047
+ <td>0.8*</td>
1048
+ </tr>
1049
+ </table>
1050
+
1051
+ *Due to differences in ionization efficiency between small and large peptides, the level of clipping reported here is most
1052
+ likely an overestimation.
1053
+
1054
+
1055
+ For information purposes the following color code is applied: Values showing an increase or decrease by
1056
+ between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
1057
+ increase of more than 10.0% compared to T0 are in red, bold and underlined.
1058
+
1059
+
1060
+ <figure>
1061
+
1062
+ RIC
1063
+
1064
+ </figure>
1065
+
1066
+
1067
+ <!-- PageFooter="biologics" -->
1068
+ <!-- PageNumber="16" -->
1069
+ <!-- PageBreak -->
1070
+
1071
+
1072
+ <figure>
1073
+ </figure>
1074
+
1075
+
1076
+ ## Conclusions
1077
+
1078
+ l A potential unidentified clipping event may be present. Two peaks were present in the RPLC-UV-
1079
+ MS profile for which no identity was found. One peak (RT around 12 min) had a clear mass of
1080
+ 13463 Da, while no mass could be retrieved for the second peak (RT around 3 min). Further
1081
+ experiments are required to find the origin of the unknown peaks.
1082
+ A less abundant clipping was found between G143G14 which falls just outside the variable region of
1083
+ HC_Knob but for sure may impact the functionality. Another clipping, this time in the variable
1084
+ region, was found between G54G55 . This clipping was confirmed via peptide mapping in the
1085
+ stressed sample in low amounts: < 1%.
1086
+
1087
+ l Cyclization of the N-terminal glutamate on the HC_knob increased up to 10.9% during temperature
1088
+ stress (both present in RPLC-UV-MS and peptide map). Cyclization of the N-terminus on the LC
1089
+ reached completion after storage for four weeks at 37℃.
1090
+
1091
+ l In addition, tryptic peptide peaks containing oxidation were found in the variable regions.
1092
+ Especially for W98 located on the HC_knob where the oxidation levels increased up to 2.8% after
1093
+ four weeks storage at 37℃. A second relevant increase in oxidation levels during the 4 weeks
1094
+ storage was found for HC(108-127): from 3.1 to 4.3%.
1095
+
1096
+ l Deamidation events on the HC_knob were limited, the largest increase was found for peptide
1097
+ HC(44-64) from 0.5% up to 3.7% over the 4 weeks storage. Another relevant increase in
1098
+ deamidation was found on LC(73-113) from 2.3 to 4.1%.
1099
+
1100
+ l In only one peptide, associated with the variable region, isomerization was observed. This in
1101
+ peptide HC(98-107): up to 2.5%.
1102
+
1103
+
1104
+ <figure>
1105
+
1106
+ RIC
1107
+
1108
+ <!-- PageFooter="biologics" -->
1109
+
1110
+ </figure>
1111
+
1112
+
1113
+ <!-- PageNumber="17" -->
1114
+ <!-- PageBreak -->
1115
+
1116
+
1117
+ <figure>
1118
+ </figure>
1119
+
1120
+
1121
+ P052_OA-02A10-GLLIAB4+LIAB11-His1_0-HIGG1-CH2-CH3-LALAPG-
1122
+ ABDEG-FJB_2024-01-26_001
1123
+
1124
+ <!-- PageBreak -->
1125
+
1126
+
1127
+ <figure>
1128
+ </figure>
1129
+
1130
+
1131
+ ### Results: AA sequence
1132
+
1133
+ l AA sequence of GLLiab4+11_Heavy_Knob_LALAPG_ABDEG (MW (G0F): 50768.4
1134
+ Da)
1135
+
1136
+ EVOLVESGGGLVQPGGSLRLSCAASGFTFSSYVMSWVRQAPGKGLEWVSHIQGGGITSYADSVKGRATISRDNSKNTLYLQ
1137
+ MNSLRAEDTAVYYCARWLVDYGLGNRGSMDYWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV
1138
+ SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPEAAGGPS
1139
+ VFLFPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKC
1140
+ KVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLWCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSF
1141
+ FLYSKLTVDKSRWQQGNVFSCSVMHEALKFHYTQKSLSLSPG
1142
+
1143
+ l AA sequence of GLHis1_Light_CL1 (MW (pyroQ): 23646.4Da)
1144
+
1145
+ QAVLTQPPSLSASPGASARLTCSLSSGTIVHGYHINWYQQKAGSPPRYLLRFYSDSNKHQGSGVPSRFSGSKDASANAGILLIS
1146
+ GLQPEDEADYYCGTYHSNTGTYVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK
1147
+ AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
1148
+
1149
+ l AA sequence of CH2_CH3_Hole_LALAPG_ABDEG (MW (G0F) 26719.1 Da)
1150
+
1151
+ DKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV
1152
+ VSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLSCAVKGFYPSDIAVEWESNG
1153
+ QPENNYKTTPPVLDSDGSFFLVSKLTVDKSRWQQGNVFSCSVMHEALKFHYTQKSLSLSPG
1154
+
1155
+
1156
+ <figure>
1157
+ </figure>
1158
+
1159
+
1160
+ RIC
1161
+
1162
+ biologics
1163
+
1164
+
1165
+ <table>
1166
+ <tr>
1167
+ <td>Blue:</td>
1168
+ <td>VH and VL</td>
1169
+ </tr>
1170
+ <tr>
1171
+ <td>Green:</td>
1172
+ <td>N-glycosylation site 19</td>
1173
+ </tr>
1174
+ <tr>
1175
+ <td>Red:</td>
1176
+ <td>N-terminal cyclization</td>
1177
+ </tr>
1178
+ </table>
1179
+
1180
+
1181
+ <!-- PageBreak -->
1182
+
1183
+
1184
+ <figure>
1185
+ </figure>
1186
+
1187
+
1188
+ ### Results: reduced RPLC-UV-MS
1189
+
1190
+ l Overlays of the UV214nm profiles P052_OA-02A10-GLLiab4+Liab11-His1_0-
1191
+ hIgG1-CH2-CH3-LALAPG-ABDEG-FJB_2024-01-26_001
1192
+
1193
+
1194
+ <figure>
1195
+
1196
+ ×10 2
1197
+
1198
+ DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P3016_Molecule2_W0_C8_19MAR2024.d
1199
+
1200
+ HC_Knob
1201
+
1202
+ 6.5
1203
+
1204
+ T0
1205
+
1206
+ 6
1207
+
1208
+ T4w 37℃
1209
+
1210
+ 6
1211
+
1212
+ x: Unknown fragment (13463 Da)
1213
+
1214
+ 0: GG clip (G144-G452)
1215
+
1216
+ y: Intact LC without pyroQ
1217
+
1218
+ 1: GG clip (G55-G452)
1219
+
1220
+ 5.5
1221
+
1222
+ Hole
1223
+
1224
+ z: Intact LC (pyroQ) + LC fragments:
1225
+
1226
+ 2: unknown
1227
+
1228
+ 5
1229
+
1230
+ b
1231
+
1232
+ LC
1233
+
1234
+ N terminal Q loss
1235
+
1236
+ 3: - 17 Da (potentially HC +
1237
+ succinimide)
1238
+
1239
+ 4.5
1240
+
1241
+ a: Hydroxy-y-lactam oxidation
1242
+
1243
+ C-terminal S loss
1244
+
1245
+ z
1246
+
1247
+ b: Intact Hole
1248
+
1249
+ C-terminal CS loss
1250
+
1251
+ 4: Traces of Oxidation (+32 Da)
1252
+
1253
+ 4
1254
+
1255
+ c: N-terminal DK loss
1256
+
1257
+ 5: Oxidation (+16Da)
1258
+
1259
+ 6: Intact HC_knob
1260
+
1261
+ 3.5
1262
+
1263
+ 7: PyroE
1264
+
1265
+ 3
1266
+
1267
+ 8: DP clip (E1-D276)
1268
+
1269
+ 2.5
1270
+
1271
+ 2
1272
+
1273
+ 1.5
1274
+
1275
+ Unknown fragment*
1276
+
1277
+ 7
1278
+
1279
+ 1
1280
+
1281
+ 5
1282
+
1283
+ c
1284
+
1285
+ 0.5
1286
+
1287
+ x
1288
+
1289
+ a
1290
+
1291
+ y
1292
+
1293
+ 0
1294
+
1295
+ 3
1296
+
1297
+ 4
1298
+
1299
+ 1
1300
+
1301
+ 2
1302
+
1303
+ 8
1304
+
1305
+ 0
1306
+
1307
+ 2
1308
+
1309
+ 3
1310
+
1311
+ 4
1312
+
1313
+ 5
1314
+
1315
+ 6
1316
+
1317
+ 7
1318
+
1319
+ 8
1320
+
1321
+ 9
1322
+
1323
+ 10
1324
+
1325
+ Response Units vs. Acquisition Time (min)
1326
+
1327
+ 11
1328
+
1329
+ 12
1330
+
1331
+ 13
1332
+
1333
+ 14
1334
+
1335
+ 15
1336
+
1337
+ 16
1338
+
1339
+ 17
1340
+
1341
+ 18
1342
+
1343
+ 19
1344
+
1345
+ 20
1346
+
1347
+ 21
1348
+
1349
+ 22
1350
+
1351
+ 23
1352
+
1353
+ 24
1354
+
1355
+ Color legend:
1356
+
1357
+ </figure>
1358
+
1359
+ \* No MS data for this peak (falls outside the
1360
+ measurement window)
1361
+
1362
+ Black: clear identity on RPLC-UV-MS
1363
+
1364
+ Blue: modification with clear trend visible on RPLC-UV-MS
1365
+ Blue: modification in variable region also confirmed in peptide
1366
+ mapping
1367
+
1368
+ Grey: most likely method induced modification
1369
+
1370
+
1371
+ <figure>
1372
+ </figure>
1373
+
1374
+
1375
+ RIC
1376
+
1377
+ biologics
1378
+
1379
+ <!-- PageNumber="20" -->
1380
+ <!-- PageBreak -->
1381
+
1382
+
1383
+ <figure>
1384
+ </figure>
1385
+
1386
+
1387
+ ## Results: reduced RPLC-UV-MS
1388
+
1389
+
1390
+ ### l Deconvoluted spectra of Hole, LC and HC_Knob (peak b, peak z and peak 6)
1391
+
1392
+ ×10 6
1393
+
1394
+ +ESI Scan (rt: 9.2-10.2 min, 103 scans) Frag=200.0V P3016_Molecule2_W0_C8_19MAR2024.d Deconvoluted (Isotope Width=10.0)
1395
+
1396
+ 26717.00
1397
+
1398
+ Theoretical mass Hole (G0F): 26719.1 Da
1399
+
1400
+ 1
1401
+
1402
+ 0.8
1403
+
1404
+ 0.6
1405
+
1406
+ 0.4
1407
+
1408
+ 0.2
1409
+
1410
+ 0
1411
+
1412
+ 21343.73
1413
+
1414
+ 32956.97
1415
+
1416
+ +ESI Scan (rt: 12.8-13.7 min, 91 scans) Frag=200.0V P3016_Molecule2_W0_C8_19MAR2024.d Deconvoluted (Isotope Width=10.0)
1417
+
1418
+ x10 6
1419
+
1420
+ 1.5
1421
+
1422
+ 1.25
1423
+
1424
+ 1
1425
+
1426
+ 0.75
1427
+
1428
+ 0.5
1429
+
1430
+ 0.25
1431
+
1432
+ 0
1433
+
1434
+ x10 5
1435
+
1436
+ 17938.20
1437
+
1438
+ 25795.40
1439
+
1440
+ 30285.87
1441
+
1442
+ 23644.57
1443
+
1444
+ Theoretical mass LC (pyroQ): 23646.43 Da
1445
+
1446
+ +ESI Scan (rt: 16.5-21.2 min, 467 scans) Frag=200.0V P3016_Molecule2_W0_C8_19MAR2024.d Deconvoluted (Isotope Width=14.1)
1447
+
1448
+
1449
+ <figure>
1450
+
1451
+ 1
1452
+
1453
+ Theoretical mass HC_knob (G0F): 50768.4 Da
1454
+
1455
+ 50764.08
1456
+
1457
+ 0.8
1458
+
1459
+ 0.6
1460
+
1461
+ 0.4
1462
+
1463
+ 0.2
1464
+
1465
+ 0
1466
+
1467
+ 43849.21
1468
+
1469
+ 53430.56
1470
+
1471
+ 58466.31
1472
+
1473
+ 10000
1474
+
1475
+ 12500
1476
+
1477
+ 15000
1478
+
1479
+ 17500
1480
+
1481
+ 20000
1482
+
1483
+ 22500
1484
+ 00 25000 2750
1485
+
1486
+ 30000 32500 35
1487
+ 35000 37500
1488
+
1489
+ Counts vs. Deconvoluted Mass (amu)
1490
+
1491
+ 42500
1492
+
1493
+ 45000
1494
+
1495
+ 47500
1496
+ 50000
1497
+
1498
+ 52500
1499
+
1500
+ 55000
1501
+
1502
+ 57500
1503
+
1504
+ 60000
1505
+
1506
+ </figure>
1507
+
1508
+
1509
+ <figure>
1510
+
1511
+ RIC
1512
+
1513
+ </figure>
1514
+
1515
+
1516
+ <!-- PageFooter="biologics" -->
1517
+ <!-- PageNumber="21" -->
1518
+ <!-- PageBreak -->
1519
+
1520
+
1521
+ <figure>
1522
+ </figure>
1523
+
1524
+
1525
+ ## Results: tryptic peptide map
1526
+
1527
+
1528
+ ### l N-terminal and C-terminal modifications for HC_Knob and LC
1529
+
1530
+
1531
+ <table>
1532
+ <tr>
1533
+ <th colspan="5">Relative quantification by EIC (%)</th>
1534
+ </tr>
1535
+ <tr>
1536
+ <th>AA Sequence</th>
1537
+ <th>Seq Loc</th>
1538
+ <th>Modification</th>
1539
+ <th>T0</th>
1540
+ <th>T4w37℃</th>
1541
+ </tr>
1542
+ <tr>
1543
+ <td rowspan="2">EVOLVESGGGLVQPGGSLR</td>
1544
+ <td rowspan="2">HC(1-19)</td>
1545
+ <td></td>
1546
+ <td>98.6</td>
1547
+ <td>88.0</td>
1548
+ </tr>
1549
+ <tr>
1550
+ <td>PyroE</td>
1551
+ <td>1.4</td>
1552
+ <td>12.0</td>
1553
+ </tr>
1554
+ <tr>
1555
+ <td rowspan="3">QAVLTQPPSLSASPGASAR</td>
1556
+ <td rowspan="3">LC(1-19)</td>
1557
+ <td></td>
1558
+ <td>3.5</td>
1559
+ <td>0</td>
1560
+ </tr>
1561
+ <tr>
1562
+ <td>PyroQ</td>
1563
+ <td>96.5</td>
1564
+ <td>99.8</td>
1565
+ </tr>
1566
+ <tr>
1567
+ <td>N terminal Q loss</td>
1568
+ <td>0.0</td>
1569
+ <td>0.2</td>
1570
+ </tr>
1571
+ <tr>
1572
+ <td rowspan="3">TVAPTECS</td>
1573
+ <td rowspan="3">LC(216-223)</td>
1574
+ <td></td>
1575
+ <td>100.0</td>
1576
+ <td>99.6</td>
1577
+ </tr>
1578
+ <tr>
1579
+ <td>S loss</td>
1580
+ <td>0.0</td>
1581
+ <td>0.2</td>
1582
+ </tr>
1583
+ <tr>
1584
+ <td>CS loss</td>
1585
+ <td>0.0</td>
1586
+ <td>0.2</td>
1587
+ </tr>
1588
+ </table>
1589
+
1590
+
1591
+ For information purposes the following color code is applied: Values showing an increase or decrease by
1592
+ between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
1593
+ increase of more than 10.0% compared to T0 are in red, bold and underlined.
1594
+
1595
+
1596
+ <figure>
1597
+
1598
+ RIC
1599
+
1600
+ </figure>
1601
+
1602
+
1603
+ <!-- PageFooter="biologics" -->
1604
+ <!-- PageNumber="22" -->
1605
+ <!-- PageBreak -->
1606
+
1607
+
1608
+ <figure>
1609
+ </figure>
1610
+
1611
+
1612
+ ## Results: tryptic peptide map
1613
+
1614
+
1615
+ ### l M/W oxidations in variable parts of HC_Knob and LC
1616
+
1617
+
1618
+ <table>
1619
+ <tr>
1620
+ <th colspan="5">Relative quantification by EIC (%)</th>
1621
+ </tr>
1622
+ <tr>
1623
+ <th>AA Sequence</th>
1624
+ <th>Seq Loc</th>
1625
+ <th>Modification</th>
1626
+ <th>T0</th>
1627
+ <th>T4w37℃</th>
1628
+ </tr>
1629
+ <tr>
1630
+ <td rowspan="2">LSCAASGFTFSSYVMSWVR</td>
1631
+ <td rowspan="2">HC(20-38)</td>
1632
+ <td></td>
1633
+ <td>97.1</td>
1634
+ <td>95.9</td>
1635
+ </tr>
1636
+ <tr>
1637
+ <td>Oxidation</td>
1638
+ <td>2.9</td>
1639
+ <td>4.1</td>
1640
+ </tr>
1641
+ <tr>
1642
+ <td rowspan="2">NTLYLQMNSLR</td>
1643
+ <td rowspan="2">HC(76-86)</td>
1644
+ <td></td>
1645
+ <td>98.4</td>
1646
+ <td>97.8</td>
1647
+ </tr>
1648
+ <tr>
1649
+ <td>Oxidation</td>
1650
+ <td>1.6</td>
1651
+ <td>2.2</td>
1652
+ </tr>
1653
+ <tr>
1654
+ <td rowspan="4">WLVDYGLGNR</td>
1655
+ <td rowspan="4">HC (098-107)</td>
1656
+ <td></td>
1657
+ <td>100.0</td>
1658
+ <td>93.2</td>
1659
+ </tr>
1660
+ <tr>
1661
+ <td>Oxidation</td>
1662
+ <td>0.0</td>
1663
+ <td>2.2</td>
1664
+ </tr>
1665
+ <tr>
1666
+ <td>Double oxidation</td>
1667
+ <td>0.0</td>
1668
+ <td>2.0</td>
1669
+ </tr>
1670
+ <tr>
1671
+ <td>+ 4 (Kynurenine)</td>
1672
+ <td>0.0</td>
1673
+ <td>2.7</td>
1674
+ </tr>
1675
+ <tr>
1676
+ <td rowspan="2">GSMDYWGQGTTVTVSSASTK</td>
1677
+ <td rowspan="2">HC(108-127)</td>
1678
+ <td></td>
1679
+ <td>97.1</td>
1680
+ <td>96.2</td>
1681
+ </tr>
1682
+ <tr>
1683
+ <td>Oxidation</td>
1684
+ <td>2.9</td>
1685
+ <td>3.8</td>
1686
+ </tr>
1687
+ </table>
1688
+
1689
+
1690
+ For information purposes the following color code is applied: Values showing an increase or decrease by
1691
+ between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
1692
+ increase of more than 10.0% compared to T0 are in red, bold and underlined.
1693
+
1694
+
1695
+ <figure>
1696
+
1697
+ RIC
1698
+
1699
+ biologics
1700
+
1701
+ </figure>
1702
+
1703
+
1704
+ <!-- PageNumber="23" -->
1705
+ <!-- PageBreak -->
1706
+
1707
+
1708
+ <figure>
1709
+ </figure>
1710
+
1711
+
1712
+ ## Results: tryptic peptide map
1713
+
1714
+
1715
+ ### l
1716
+
1717
+
1718
+ #### N/Q deamidation in variable parts of HC_Knob and LC
1719
+
1720
+
1721
+ <table>
1722
+ <tr>
1723
+ <th colspan="5">Relative quantification by EIC (%)</th>
1724
+ </tr>
1725
+ <tr>
1726
+ <th>AA Sequence</th>
1727
+ <th>Seq Loc</th>
1728
+ <th>Modification</th>
1729
+ <th>T0</th>
1730
+ <th>T4w 37℃</th>
1731
+ </tr>
1732
+ <tr>
1733
+ <td rowspan="2">GLEWVSHIQGGGITSYADSVK</td>
1734
+ <td rowspan="2">HC(44-64)</td>
1735
+ <td></td>
1736
+ <td>99.4</td>
1737
+ <td>96.3</td>
1738
+ </tr>
1739
+ <tr>
1740
+ <td>deamidation</td>
1741
+ <td>0.6</td>
1742
+ <td>3.7</td>
1743
+ </tr>
1744
+ <tr>
1745
+ <td rowspan="2">DNSKNTLYLQMNSLR*</td>
1746
+ <td rowspan="2">HC(72-86)</td>
1747
+ <td></td>
1748
+ <td>98.1</td>
1749
+ <td>98.5</td>
1750
+ </tr>
1751
+ <tr>
1752
+ <td>deamidation</td>
1753
+ <td>1.9</td>
1754
+ <td>1.5</td>
1755
+ </tr>
1756
+ <tr>
1757
+ <td rowspan="2">NTLYLQMNSLR</td>
1758
+ <td rowspan="2">HC(76-86)</td>
1759
+ <td></td>
1760
+ <td>99.7</td>
1761
+ <td>99.0</td>
1762
+ </tr>
1763
+ <tr>
1764
+ <td>deamidation</td>
1765
+ <td>0.3</td>
1766
+ <td>1.0</td>
1767
+ </tr>
1768
+ <tr>
1769
+ <td rowspan="2">WLVDYGLGNR</td>
1770
+ <td rowspan="2">HC(98-107)</td>
1771
+ <td></td>
1772
+ <td>99.8</td>
1773
+ <td>99.0</td>
1774
+ </tr>
1775
+ <tr>
1776
+ <td>deamidation</td>
1777
+ <td>0.2</td>
1778
+ <td>1.0</td>
1779
+ </tr>
1780
+ <tr>
1781
+ <td rowspan="2">DASANAGILLISGLQPEDEADYYCGTYHSNT GTYVFGGGTK</td>
1782
+ <td rowspan="2">LC(73-113)</td>
1783
+ <td></td>
1784
+ <td>97.5</td>
1785
+ <td>95.4</td>
1786
+ </tr>
1787
+ <tr>
1788
+ <td>deamidation</td>
1789
+ <td>2.5</td>
1790
+ <td>4.6</td>
1791
+ </tr>
1792
+ </table>
1793
+
1794
+ *The deamidation level on the misscleaved peptide was checked as the peptide DNSK has bad retention to have a reliable
1795
+ quantification. However, the misscleaved peptide has low abundance which can also lead to unreliable quantification of
1796
+ modifications
1797
+
1798
+
1799
+ <figure>
1800
+
1801
+ RIC
1802
+
1803
+ </figure>
1804
+
1805
+
1806
+ biologics
1807
+
1808
+ For information purposes the following color code is applied: Values showing an increase or decrease by
1809
+ between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
1810
+ increase of more than 10.0% compared to T0 are in red, bold and underlined.
1811
+
1812
+ <!-- PageNumber="24" -->
1813
+ <!-- PageBreak -->
1814
+
1815
+
1816
+ <figure>
1817
+ </figure>
1818
+
1819
+
1820
+ ## Results: tryptic peptide map
1821
+
1822
+
1823
+ ### l Isomerization events in variable parts of HC_Knob and LC
1824
+
1825
+
1826
+ <table>
1827
+ <tr>
1828
+ <th colspan="5">Relative quantification by EIC (%)</th>
1829
+ </tr>
1830
+ <tr>
1831
+ <th>AA Sequence</th>
1832
+ <th>Seq Loc</th>
1833
+ <th>Modification</th>
1834
+ <th>T0</th>
1835
+ <th>T4w 37℃</th>
1836
+ </tr>
1837
+ <tr>
1838
+ <td rowspan="2">WLVDYGLGNR</td>
1839
+ <td rowspan="2">HC(98-107)</td>
1840
+ <td></td>
1841
+ <td>99.5</td>
1842
+ <td>95.1</td>
1843
+ </tr>
1844
+ <tr>
1845
+ <td>isomerization</td>
1846
+ <td>0.5</td>
1847
+ <td>4.9</td>
1848
+ </tr>
1849
+ </table>
1850
+
1851
+
1852
+ For information purposes the following color code is applied: Values showing an increase or decrease by
1853
+ between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
1854
+ increase of more than 10.0% compared to T0 are in red, bold and underlined.
1855
+
1856
+
1857
+ <figure>
1858
+
1859
+ RIC
1860
+
1861
+ </figure>
1862
+
1863
+
1864
+ biologics
1865
+
1866
+ <!-- PageNumber="25" -->
1867
+ <!-- PageBreak -->
1868
+
1869
+
1870
+ <figure>
1871
+ </figure>
1872
+
1873
+
1874
+ ## Results: tryptic peptide map
1875
+
1876
+
1877
+ ### l Clipping events in variable parts of HC_Knob and LC
1878
+
1879
+
1880
+ <table>
1881
+ <tr>
1882
+ <th colspan="5">Relative quantification by EIC (%)</th>
1883
+ </tr>
1884
+ <tr>
1885
+ <th>AA Sequence</th>
1886
+ <th>Seq Loc</th>
1887
+ <th>Modification</th>
1888
+ <th>T0</th>
1889
+ <th>T4w 37℃</th>
1890
+ </tr>
1891
+ <tr>
1892
+ <td>GLEWVSHIQGGGITSYADSVK</td>
1893
+ <td>HC(44-64)</td>
1894
+ <td></td>
1895
+ <td>100.0</td>
1896
+ <td>99.7</td>
1897
+ </tr>
1898
+ <tr>
1899
+ <td>GLEWVSHIQGG</td>
1900
+ <td>HC(44-54)</td>
1901
+ <td rowspan="2">GG clip</td>
1902
+ <td>0.0</td>
1903
+ <td>0.3*</td>
1904
+ </tr>
1905
+ <tr>
1906
+ <td>GITSYADSVK</td>
1907
+ <td>HC(55-64)</td>
1908
+ <td>0.0</td>
1909
+ <td>0.8*</td>
1910
+ </tr>
1911
+ </table>
1912
+
1913
+ *Due to differences in ionization efficiency between small and large peptides, the level of clipping reported here is most
1914
+ likely an overestimation.
1915
+
1916
+
1917
+ For information purposes the following color code is applied: Values showing an increase or decrease by
1918
+ between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
1919
+ increase of more than 10.0% compared to T0 are in red, bold and underlined.
1920
+
1921
+
1922
+ <figure>
1923
+
1924
+ RIC
1925
+
1926
+ </figure>
1927
+
1928
+
1929
+ <!-- PageFooter="biologics" -->
1930
+ <!-- PageNumber="26" -->
1931
+ <!-- PageBreak -->
1932
+
1933
+
1934
+ <figure>
1935
+ </figure>
1936
+
1937
+
1938
+ ## Conclusions
1939
+
1940
+ l A potential unidentified clipping event may be present. Two peaks were present in the RPLC-UV-
1941
+ MS profile for which no identity was found. One peak (RT around 12 min) had a clear mass of
1942
+ 13463 Da, while no mass could be retrieved for the second peak (RT around 3 min). Further
1943
+ experiments are required to find the origin of the unknown peaks.
1944
+ A less abundant clipping was found between G143G14 which falls just outside the variable region of
1945
+ HC_Knob but for sure may impact the functionality. Another clipping, this time in the variable
1946
+ region, was found between G54G55 . This clipping was confirmed via peptide mapping in the
1947
+ stressed sample in low amounts: < 1%.
1948
+
1949
+ l Cyclization of the N-terminal glutamate on the HC_knob increased up to 12.0% during temperature
1950
+ stress (both present in RPLC-UV-MS and peptide map). Cyclization of the N-terminus on the LC
1951
+ reached completion after storage for four weeks at 37℃.
1952
+
1953
+ l In addition, tryptic peptide peaks containing oxidation were found in the variable regions.
1954
+ Especially for Wgg located on the HC_knob where the oxidation levels increased up to 6.9% after
1955
+ four weeks storage at 37℃. A second relevant increase in oxidation levels during the 4 weeks
1956
+ storage was found for HC(20-38): from 2.9 to 4.1%.
1957
+
1958
+ l Deamidation events on the HC_knob were limited, the largest increase was found for peptide
1959
+ HC(44-64) from 0.6% up to 3.7% over the 4 weeks storage. Another relevant increase in
1960
+ deamidation was found on LC(73-113) from 2.5 to 4.6%.
1961
+
1962
+ l In only one peptide, associated with the variable region, isomerization was observed. This in
1963
+ peptide HC(98-107): up to 4.9%.
1964
+
1965
+
1966
+ <figure>
1967
+
1968
+ RIC
1969
+
1970
+ <!-- PageFooter="biologics" -->
1971
+
1972
+ </figure>
1973
+
1974
+
1975
+ <!-- PageNumber="27" -->
1976
+ <!-- PageBreak -->
1977
+
1978
+
1979
+ <figure>
1980
+ </figure>
1981
+
1982
+
1983
+ ### Signature section RIC
1984
+
1985
+
1986
+ #### Author
1987
+
1988
+
1989
+ <table>
1990
+ <tr>
1991
+ <th>Nathan Cardon</th>
1992
+ <th>Date:</th>
1993
+ <th>14-MAY-2024</th>
1994
+ </tr>
1995
+ <tr>
1996
+ <td>Sr Research Associate | Project Responsible</td>
1997
+ <td>Signature:</td>
1998
+ <td></td>
1999
+ </tr>
2000
+ <tr>
2001
+ <td colspan="3">Reviewer</td>
2002
+ </tr>
2003
+ <tr>
2004
+ <td>Gianni Vandenborre Ph.D.</td>
2005
+ <td>Date:</td>
2006
+ <td>14-MAY-2024</td>
2007
+ </tr>
2008
+ <tr>
2009
+ <td>Sr Scientist</td>
2010
+ <td>Signature:</td>
2011
+ <td></td>
2012
+ </tr>
2013
+ <tr>
2014
+ <td>Mabelle Meersseman</td>
2015
+ <td>Date:</td>
2016
+ <td>15-MAY-2024</td>
2017
+ </tr>
2018
+ <tr>
2019
+ <td>Group Leader</td>
2020
+ <td>Signature:</td>
2021
+ <td></td>
2022
+ </tr>
2023
+ <tr>
2024
+ <td colspan="3">Approver</td>
2025
+ </tr>
2026
+ <tr>
2027
+ <td>Koen Sandra Ph.D.</td>
2028
+ <td>Date:</td>
2029
+ <td>15-MAY-2024</td>
2030
+ </tr>
2031
+ <tr>
2032
+ <td>CEO</td>
2033
+ <td>Signature:</td>
2034
+ <td>Koen Sandra</td>
2035
+ </tr>
2036
+ </table>
2037
+
2038
+
2039
+ <figure>
2040
+
2041
+ RIC
2042
+
2043
+ </figure>
2044
+
2045
+
2046
+ <!-- PageFooter="biologics" -->
2047
+ <!-- PageNumber="28" -->
2048
+ <!-- PageBreak -->
2049
+
2050
+
2051
+ <figure>
2052
+ </figure>
2053
+
2054
+
2055
+ # Version control
2056
+
2057
+
2058
+ <table>
2059
+ <tr>
2060
+ <th>Version</th>
2061
+ <th>Date of issue</th>
2062
+ <th>Reason for version update</th>
2063
+ </tr>
2064
+ <tr>
2065
+ <td>01</td>
2066
+ <td>15-MAY-2024</td>
2067
+ <td>First issue</td>
2068
+ </tr>
2069
+ <tr>
2070
+ <td></td>
2071
+ <td></td>
2072
+ <td></td>
2073
+ </tr>
2074
+ <tr>
2075
+ <td></td>
2076
+ <td></td>
2077
+ <td></td>
2078
+ </tr>
2079
+ </table>
2080
+
2081
+
2082
+ 15-MAY-2024
2083
+
2084
+ Obo Jaussens
2085
+
2086
+
2087
+ <figure>
2088
+
2089
+ RIC
2090
+
2091
+ </figure>
2092
+
2093
+
2094
+ <!-- PageFooter="biologics" -->
2095
+ <!-- PageNumber="29" -->
2096
+ <!-- PageBreak -->
2097
+
2098
+
2099
+ <figure>
2100
+
2101
+ RIC
2102
+
2103
+ biologics
2104
+
2105
+ </figure>
2106
+
2107
+
2108
+ YOUR MOLECULE. OUR ANALYTICS. NO SECRETS.
2109
+
2110
+ <!-- PageFooter="www.RIC-biologics.com" -->
src/agents/__pycache__/field_mapper_agent.cpython-312.pyc CHANGED
Binary files a/src/agents/__pycache__/field_mapper_agent.cpython-312.pyc and b/src/agents/__pycache__/field_mapper_agent.cpython-312.pyc differ
 
src/agents/field_mapper_agent.py CHANGED
@@ -299,56 +299,15 @@ class FieldMapperAgent(BaseAgent):
299
 
300
  self.logger.info(f"Processing field: {field}")
301
  self.logger.info(f"Using document context: {ctx['document_context']}")
302
-
303
- # Split text into pages using the same markers as IndexAgent
304
- page_markers = [
305
- '<!-- PageBreak -->',
306
- 'Page',
307
- '---',
308
- '\n\n', # Double newline as fallback
309
- ]
310
-
311
- # First try to find which marker is used
312
- used_marker = None
313
- for marker in page_markers:
314
- if marker in text:
315
- used_marker = marker
316
- self.logger.info(f"Found page marker: {marker}")
317
- break
318
-
319
- if not used_marker:
320
- self.logger.warning("No page markers found, falling back to double newline")
321
- used_marker = '\n\n'
322
-
323
- # Split the text
324
- if used_marker == '\n\n':
325
- pages = [p.strip() for p in text.split(used_marker) if p.strip()]
326
- else:
327
- pages = []
328
- current_page = []
329
-
330
- for line in text.split('\n'):
331
- if used_marker in line:
332
- if current_page:
333
- pages.append('\n'.join(current_page))
334
- current_page = [line]
335
- else:
336
- current_page.append(line)
337
-
338
- if current_page:
339
- pages.append('\n'.join(current_page))
340
-
341
- self.logger.info(f"Split document into {len(pages)} pages")
342
-
343
- # Process each page
344
- for i, page in enumerate(pages, 1):
345
- self.logger.info(f"Processing page {i}/{len(pages)}")
346
- value = self._extract_field_value_from_page(field, page, ctx["document_context"])
347
- if value:
348
- return value
349
-
350
- # If no value found in any page, try the search-based approach as fallback
351
- self.logger.warning("No value found in page-by-page analysis, falling back to search-based approach")
352
 
353
  if index and "embeddings" in index:
354
  self.logger.info("Using semantic search with embeddings")
 
299
 
300
  self.logger.info(f"Processing field: {field}")
301
  self.logger.info(f"Using document context: {ctx['document_context']}")
302
+
303
+ # Process entire document at once
304
+ self.logger.info("Processing entire document...")
305
+ value = self._extract_field_value_from_page(field, text, ctx["document_context"])
306
+ if value:
307
+ return value
308
+
309
+ # If no value found, try the search-based approach as fallback
310
+ self.logger.warning("No value found in document analysis, falling back to search-based approach")
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
311
 
312
  if index and "embeddings" in index:
313
  self.logger.info("Using semantic search with embeddings")
src/services/__pycache__/azure_di_service.cpython-312.pyc CHANGED
Binary files a/src/services/__pycache__/azure_di_service.cpython-312.pyc and b/src/services/__pycache__/azure_di_service.cpython-312.pyc differ
 
src/services/azure_di_service.py CHANGED
@@ -1,6 +1,8 @@
1
  """Real wrapper goes here – currently not used by stub agents."""
2
  import logging
3
  import json
 
 
4
  from azure.ai.documentintelligence import DocumentIntelligenceClient
5
  from azure.ai.documentintelligence.models import DocumentContentFormat
6
  from azure.core.credentials import AzureKeyCredential
@@ -10,6 +12,8 @@ class AzureDIService:
10
  def __init__(self, endpoint: str, key: str):
11
  self.client = DocumentIntelligenceClient(endpoint=endpoint, credential=AzureKeyCredential(key))
12
  self.logger = logging.getLogger(__name__)
 
 
13
 
14
  def extract_tables(self, pdf_bytes: bytes):
15
  try:
@@ -35,6 +39,13 @@ class AzureDIService:
35
  if hasattr(result, "content"):
36
  self.logger.info(f"Content type: {type(result.content)}")
37
  self.logger.info(f"Content preview: {result.content[:500]}")
 
 
 
 
 
 
 
38
 
39
  # Check if tables exist and log their structure
40
  if hasattr(result, "tables"):
 
1
  """Real wrapper goes here – currently not used by stub agents."""
2
  import logging
3
  import json
4
+ from datetime import datetime
5
+ from pathlib import Path
6
  from azure.ai.documentintelligence import DocumentIntelligenceClient
7
  from azure.ai.documentintelligence.models import DocumentContentFormat
8
  from azure.core.credentials import AzureKeyCredential
 
12
  def __init__(self, endpoint: str, key: str):
13
  self.client = DocumentIntelligenceClient(endpoint=endpoint, credential=AzureKeyCredential(key))
14
  self.logger = logging.getLogger(__name__)
15
+ self.log_dir = Path("logs/di_content")
16
+ self.log_dir.mkdir(parents=True, exist_ok=True)
17
 
18
  def extract_tables(self, pdf_bytes: bytes):
19
  try:
 
39
  if hasattr(result, "content"):
40
  self.logger.info(f"Content type: {type(result.content)}")
41
  self.logger.info(f"Content preview: {result.content[:500]}")
42
+
43
+ # Save content to timestamped file
44
+ timestamp = datetime.now().strftime("%Y%m%d_%H%M%S")
45
+ log_file = self.log_dir / f"di_content_{timestamp}.txt"
46
+ with open(log_file, "w", encoding="utf-8") as f:
47
+ f.write(result.content)
48
+ self.logger.info(f"Saved DI content to {log_file}")
49
 
50
  # Check if tables exist and log their structure
51
  if hasattr(result, "tables"):