Spaces:
Running
Running
Commit
·
26b3eb7
1
Parent(s):
54478a0
Refactor FieldMapperAgent to process entire documents at once, improving efficiency by eliminating page-by-page analysis. Update logging to reflect changes in document processing. Enhance AzureDIService to save extracted content to timestamped files for better traceability.
Browse files- logs/di_content/di_content_20250604_140737.txt +3663 -0
- logs/di_content/di_content_20250604_141118.txt +0 -0
- logs/di_content/di_content_20250604_141519.txt +2110 -0
- src/agents/__pycache__/field_mapper_agent.cpython-312.pyc +0 -0
- src/agents/field_mapper_agent.py +9 -50
- src/services/__pycache__/azure_di_service.cpython-312.pyc +0 -0
- src/services/azure_di_service.py +11 -0
logs/di_content/di_content_20250604_140737.txt
ADDED
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|
1 |
+
<figure>
|
2 |
+
|
3 |
+
IGE-ABDEG LEAD SELECTION - STRESS TEST
|
4 |
+
|
5 |
+
Argenx - P1429-R01-v01 - 30 JUL 2020
|
6 |
+
|
7 |
+
</figure>
|
8 |
+
|
9 |
+
|
10 |
+
<figure>
|
11 |
+
|
12 |
+
RIC
|
13 |
+
|
14 |
+
biologics
|
15 |
+
|
16 |
+
</figure>
|
17 |
+
|
18 |
+
|
19 |
+
<!-- PageBreak -->
|
20 |
+
|
21 |
+
|
22 |
+
<figure>
|
23 |
+
</figure>
|
24 |
+
|
25 |
+
|
26 |
+
<!-- PageHeader="Table of contents" -->
|
27 |
+
|
28 |
+
· Project information
|
29 |
+
|
30 |
+
· Scope
|
31 |
+
|
32 |
+
· Test samples
|
33 |
+
|
34 |
+
· Method
|
35 |
+
|
36 |
+
· Results
|
37 |
+
|
38 |
+
· Conclusions
|
39 |
+
|
40 |
+
|
41 |
+
<figure>
|
42 |
+
|
43 |
+
RIC
|
44 |
+
|
45 |
+
</figure>
|
46 |
+
|
47 |
+
|
48 |
+
<!-- PageFooter="biologics" -->
|
49 |
+
<!-- PageNumber="2" -->
|
50 |
+
<!-- PageBreak -->
|
51 |
+
|
52 |
+
|
53 |
+
<figure>
|
54 |
+
</figure>
|
55 |
+
|
56 |
+
|
57 |
+
# Project information
|
58 |
+
|
59 |
+
|
60 |
+
<table>
|
61 |
+
<tr>
|
62 |
+
<td>· Project code:</td>
|
63 |
+
<td>P1429</td>
|
64 |
+
</tr>
|
65 |
+
<tr>
|
66 |
+
<td>· LNB number:</td>
|
67 |
+
<td>2020.007</td>
|
68 |
+
</tr>
|
69 |
+
<tr>
|
70 |
+
<td>· Project manager:</td>
|
71 |
+
<td>Gianni Vandenborre</td>
|
72 |
+
</tr>
|
73 |
+
<tr>
|
74 |
+
<td>· Report name:</td>
|
75 |
+
<td>P1429-R01_v01</td>
|
76 |
+
</tr>
|
77 |
+
<tr>
|
78 |
+
<td>· Report issue date:</td>
|
79 |
+
<td>30-JUL-2020</td>
|
80 |
+
</tr>
|
81 |
+
</table>
|
82 |
+
|
83 |
+
|
84 |
+
<figure>
|
85 |
+
|
86 |
+
<!-- PageFooter="RIC" -->
|
87 |
+
|
88 |
+
</figure>
|
89 |
+
|
90 |
+
|
91 |
+
<!-- PageFooter="biologics" -->
|
92 |
+
<!-- PageNumber="3" -->
|
93 |
+
<!-- PageBreak -->
|
94 |
+
|
95 |
+
|
96 |
+
<figure>
|
97 |
+
</figure>
|
98 |
+
|
99 |
+
|
100 |
+
# Scope
|
101 |
+
|
102 |
+
· Relative quantification of the PTMs present in several mAb batches that
|
103 |
+
were derived from a forced degradation study by reduced peptide map
|
104 |
+
analysis to assist argenx in the selection of a lead candidate
|
105 |
+
|
106 |
+
|
107 |
+
<figure>
|
108 |
+
|
109 |
+
RIC
|
110 |
+
|
111 |
+
</figure>
|
112 |
+
|
113 |
+
|
114 |
+
<!-- PageFooter="biologics" -->
|
115 |
+
<!-- PageNumber="4" -->
|
116 |
+
<!-- PageBreak -->
|
117 |
+
|
118 |
+
|
119 |
+
<figure>
|
120 |
+
</figure>
|
121 |
+
|
122 |
+
|
123 |
+
# Test samples
|
124 |
+
|
125 |
+
|
126 |
+
<table>
|
127 |
+
<tr>
|
128 |
+
<th>Test sample ID client</th>
|
129 |
+
<th>Batch No.</th>
|
130 |
+
<th>Volume (LL)</th>
|
131 |
+
<th>Protein concentration</th>
|
132 |
+
</tr>
|
133 |
+
<tr>
|
134 |
+
<td>18E2 HIS2 ABDEG T0</td>
|
135 |
+
<td rowspan="2">UPX 3429</td>
|
136 |
+
<td>60</td>
|
137 |
+
<td>1 mg/mL</td>
|
138 |
+
</tr>
|
139 |
+
<tr>
|
140 |
+
<td>18E2 HIS2 ABDEG T6w 37℃</td>
|
141 |
+
<td>60</td>
|
142 |
+
<td></td>
|
143 |
+
</tr>
|
144 |
+
<tr>
|
145 |
+
<td>18E2VL HIS LALA ABDEG T0</td>
|
146 |
+
<td rowspan="2">UPX 3423</td>
|
147 |
+
<td>60</td>
|
148 |
+
<td>1 mg/ml</td>
|
149 |
+
</tr>
|
150 |
+
<tr>
|
151 |
+
<td>18E2VL HIS LALA ABDEG T6w 37℃</td>
|
152 |
+
<td>60</td>
|
153 |
+
<td></td>
|
154 |
+
</tr>
|
155 |
+
<tr>
|
156 |
+
<td>Ligelizumab mAB37 T0</td>
|
157 |
+
<td rowspan="2">D27/01/2020</td>
|
158 |
+
<td>60</td>
|
159 |
+
<td>1 mg/ml</td>
|
160 |
+
</tr>
|
161 |
+
<tr>
|
162 |
+
<td>Ligelizumab mAB37 T6w 37℃</td>
|
163 |
+
<td>60</td>
|
164 |
+
<td></td>
|
165 |
+
</tr>
|
166 |
+
<tr>
|
167 |
+
<td>OmaVH15W100b_VL3 T0</td>
|
168 |
+
<td rowspan="2">Evitria 801689.2</td>
|
169 |
+
<td>60</td>
|
170 |
+
<td>1 mg/mL</td>
|
171 |
+
</tr>
|
172 |
+
<tr>
|
173 |
+
<td>OmaVH15W100b_VL3 T4w 37℃</td>
|
174 |
+
<td>60</td>
|
175 |
+
<td></td>
|
176 |
+
</tr>
|
177 |
+
<tr>
|
178 |
+
<td>OmaVH15G55H_VL3S31H T0</td>
|
179 |
+
<td rowspan="2">Evitria 801689.1</td>
|
180 |
+
<td>60</td>
|
181 |
+
<td>1 mg/mL</td>
|
182 |
+
</tr>
|
183 |
+
<tr>
|
184 |
+
<td>OmaVH15G55H_VL3S31H T4w 37℃</td>
|
185 |
+
<td>60</td>
|
186 |
+
<td></td>
|
187 |
+
</tr>
|
188 |
+
</table>
|
189 |
+
|
190 |
+
|
191 |
+
· Formulation buffer: PBS + PS20 0.02%
|
192 |
+
|
193 |
+
|
194 |
+
<figure>
|
195 |
+
|
196 |
+
RIC
|
197 |
+
|
198 |
+
</figure>
|
199 |
+
|
200 |
+
|
201 |
+
<!-- PageFooter="biologics" -->
|
202 |
+
<!-- PageNumber="5" -->
|
203 |
+
<!-- PageBreak -->
|
204 |
+
|
205 |
+
|
206 |
+
<figure>
|
207 |
+
</figure>
|
208 |
+
|
209 |
+
|
210 |
+
# Method
|
211 |
+
|
212 |
+
· Rebuffering using Amicon Ultra Centrifugal Filter (0.5 mL, MWCO 10 kDa)
|
213 |
+
|
214 |
+
· 3x conditioning step using 500 uL 100 mM Tris pH 7.5, followed by centrifugation
|
215 |
+
|
216 |
+
· 450 µL 100 mM pH 7.5 + 25 uL mAb sample (at 1 ug/uL) followed by centrifugation
|
217 |
+
|
218 |
+
· 3x buffer exchange steps using 450 µL 100 mM Tris pH 7.5 followed by centrifugation
|
219 |
+
|
220 |
+
· Invert spin of the membrane filter to collect 50 uL (so already 1/2 dilution)
|
221 |
+
|
222 |
+
· Tryptic digestion of the mAb
|
223 |
+
|
224 |
+
. 25 µg protein was used (50 uL at concentration of 0,5 µg/uL + 16.3 uL 100 mM Tris-HCI pH 7.5)
|
225 |
+
|
226 |
+
· Addition of 26.3 uL Rapigest 0.2% in 100 mM Tris-HCI pH 7.5
|
227 |
+
|
228 |
+
· Reduction using 2.4 uL 400 mM DTT in 100 mM Tris-HCI pH 7.5
|
229 |
+
|
230 |
+
· Incubation at 60℃ for 30 min
|
231 |
+
|
232 |
+
· Alkylation using 5 uL 400 mM IAA in 100 mM Tris-HCI pH 7.5
|
233 |
+
|
234 |
+
· Incubation at 37°℃ for 60 min
|
235 |
+
|
236 |
+
· Proteolysis using 5 uL trypsin (0.4 ug/uL, enzyme/protein: 1/12,5)
|
237 |
+
|
238 |
+
· Overnight Incubation at 37℃
|
239 |
+
|
240 |
+
|
241 |
+
<figure>
|
242 |
+
|
243 |
+
RIC
|
244 |
+
|
245 |
+
</figure>
|
246 |
+
|
247 |
+
|
248 |
+
<!-- PageFooter="biologics" -->
|
249 |
+
<!-- PageNumber="6" -->
|
250 |
+
<!-- PageBreak -->
|
251 |
+
|
252 |
+
|
253 |
+
<figure>
|
254 |
+
</figure>
|
255 |
+
|
256 |
+
|
257 |
+
# Method
|
258 |
+
|
259 |
+
|
260 |
+
## · Peptide map method
|
261 |
+
|
262 |
+
· Column: AdvanceBio Peptide Map column (2.1 x 250 mm, 2.7 um particles)
|
263 |
+
|
264 |
+
· Mobile phase A: 0.05% TFA in H2O (v/v) (or 0.1% FA)
|
265 |
+
|
266 |
+
· Mobile phase B: 0.05% TFA in acetonitrile (v/v) (or 0.1% FA)
|
267 |
+
|
268 |
+
· Flow rate: 300 uL/min
|
269 |
+
|
270 |
+
· Injection volume: 15 uL
|
271 |
+
|
272 |
+
· Column temperature: 60℃
|
273 |
+
|
274 |
+
· Gradient:
|
275 |
+
|
276 |
+
|
277 |
+
<table>
|
278 |
+
<tr>
|
279 |
+
<th>Time (min)</th>
|
280 |
+
<th>%A</th>
|
281 |
+
<th>%B</th>
|
282 |
+
</tr>
|
283 |
+
<tr>
|
284 |
+
<td>0.0</td>
|
285 |
+
<td>99</td>
|
286 |
+
<td>1</td>
|
287 |
+
</tr>
|
288 |
+
<tr>
|
289 |
+
<td>2.0</td>
|
290 |
+
<td>99</td>
|
291 |
+
<td>1</td>
|
292 |
+
</tr>
|
293 |
+
<tr>
|
294 |
+
<td>35.0</td>
|
295 |
+
<td>55</td>
|
296 |
+
<td>45</td>
|
297 |
+
</tr>
|
298 |
+
<tr>
|
299 |
+
<td>36.0</td>
|
300 |
+
<td>10</td>
|
301 |
+
<td>90</td>
|
302 |
+
</tr>
|
303 |
+
<tr>
|
304 |
+
<td>42.0</td>
|
305 |
+
<td>10</td>
|
306 |
+
<td>90</td>
|
307 |
+
</tr>
|
308 |
+
<tr>
|
309 |
+
<td>43.0</td>
|
310 |
+
<td>99</td>
|
311 |
+
<td>1</td>
|
312 |
+
</tr>
|
313 |
+
<tr>
|
314 |
+
<td>56.0</td>
|
315 |
+
<td>99</td>
|
316 |
+
<td>1</td>
|
317 |
+
</tr>
|
318 |
+
<tr>
|
319 |
+
<td>28.0</td>
|
320 |
+
<td>99</td>
|
321 |
+
<td>1</td>
|
322 |
+
</tr>
|
323 |
+
</table>
|
324 |
+
|
325 |
+
|
326 |
+
<figure>
|
327 |
+
|
328 |
+
RIC
|
329 |
+
|
330 |
+
</figure>
|
331 |
+
|
332 |
+
|
333 |
+
<!-- PageFooter="biologics" -->
|
334 |
+
<!-- PageNumber="7" -->
|
335 |
+
<!-- PageBreak -->
|
336 |
+
|
337 |
+
|
338 |
+
<figure>
|
339 |
+
</figure>
|
340 |
+
|
341 |
+
|
342 |
+
# Results (UV 214 nm chromatograms TFA runs)
|
343 |
+
|
344 |
+
|
345 |
+
<figure>
|
346 |
+
|
347 |
+
x10 2 DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_18E2HIS2 ABDEG.d
|
348 |
+
|
349 |
+
18E2HIS2 ABDEG
|
350 |
+
|
351 |
+
1
|
352 |
+
|
353 |
+
M
|
354 |
+
|
355 |
+
0
|
356 |
+
|
357 |
+
×10
|
358 |
+
|
359 |
+
10 2 DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_18E2HIS2 ABDEG_T6w.d
|
360 |
+
|
361 |
+
18E2HIS2 ABDEG
|
362 |
+
T6w
|
363 |
+
|
364 |
+
1
|
365 |
+
|
366 |
+
0
|
367 |
+
|
368 |
+
M
|
369 |
+
|
370 |
+
x10 2 DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_18E2VL HIS LALA ABDEG.d
|
371 |
+
|
372 |
+
18E2VL HIS LALA
|
373 |
+
ABDEG
|
374 |
+
|
375 |
+
1
|
376 |
+
|
377 |
+
M
|
378 |
+
|
379 |
+
0
|
380 |
+
|
381 |
+
×10
|
382 |
+
|
383 |
+
2 DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_18E2VL HIS LALA ABDEG_T6w.d
|
384 |
+
|
385 |
+
18E2VL HIS LALA
|
386 |
+
ABDEG
|
387 |
+
T6w
|
388 |
+
|
389 |
+
1
|
390 |
+
|
391 |
+
0
|
392 |
+
|
393 |
+
×10 2
|
394 |
+
|
395 |
+
DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_Ligelizumab mAb 37.d
|
396 |
+
|
397 |
+
Ligelizumab
|
398 |
+
|
399 |
+
1
|
400 |
+
|
401 |
+
0
|
402 |
+
|
403 |
+
x10 2
|
404 |
+
|
405 |
+
DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_Ligelizumab mAb 37_T6w.d
|
406 |
+
|
407 |
+
Ligelizumab
|
408 |
+
T6w
|
409 |
+
|
410 |
+
1
|
411 |
+
|
412 |
+
0
|
413 |
+
|
414 |
+
8
|
415 |
+
|
416 |
+
1
|
417 |
+
|
418 |
+
2
|
419 |
+
|
420 |
+
3
|
421 |
+
|
422 |
+
4
|
423 |
+
|
424 |
+
5
|
425 |
+
|
426 |
+
6
|
427 |
+
|
428 |
+
7
|
429 |
+
|
430 |
+
8
|
431 |
+
|
432 |
+
9
|
433 |
+
|
434 |
+
10
|
435 |
+
|
436 |
+
11
|
437 |
+
|
438 |
+
12
|
439 |
+
|
440 |
+
13
|
441 |
+
|
442 |
+
14
|
443 |
+
|
444 |
+
15
|
445 |
+
|
446 |
+
16
|
447 |
+
|
448 |
+
17
|
449 |
+
|
450 |
+
18
|
451 |
+
|
452 |
+
19
|
453 |
+
|
454 |
+
20
|
455 |
+
|
456 |
+
21
|
457 |
+
|
458 |
+
22
|
459 |
+
|
460 |
+
23
|
461 |
+
|
462 |
+
24
|
463 |
+
|
464 |
+
25
|
465 |
+
|
466 |
+
26
|
467 |
+
|
468 |
+
27
|
469 |
+
|
470 |
+
28
|
471 |
+
|
472 |
+
29
|
473 |
+
|
474 |
+
30
|
475 |
+
|
476 |
+
31
|
477 |
+
|
478 |
+
32
|
479 |
+
|
480 |
+
33
|
481 |
+
|
482 |
+
34
|
483 |
+
|
484 |
+
35
|
485 |
+
|
486 |
+
Response Units vs. Acquisition Time (min)
|
487 |
+
|
488 |
+
</figure>
|
489 |
+
|
490 |
+
|
491 |
+
<!-- PageBreak -->
|
492 |
+
|
493 |
+
|
494 |
+
<figure>
|
495 |
+
</figure>
|
496 |
+
|
497 |
+
|
498 |
+
## Results (UV 214 nm chromatograms TFA runs)
|
499 |
+
|
500 |
+
|
501 |
+
<figure>
|
502 |
+
|
503 |
+
x10 2
|
504 |
+
|
505 |
+
DAD1 - A:Sig=214.0,8.0 Ref=360.0, 100.0 P1429_19JUN2020_PM_TFA_RAT_MS_OmaVH15G55H_VL3S31H.d
|
506 |
+
|
507 |
+
OmaVH15G55H_VL3S31H
|
508 |
+
|
509 |
+
2.5
|
510 |
+
|
511 |
+
2
|
512 |
+
|
513 |
+
1.5
|
514 |
+
|
515 |
+
1
|
516 |
+
|
517 |
+
0.5
|
518 |
+
|
519 |
+
0
|
520 |
+
|
521 |
+
x10 2 DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_OmaVH15G55H_VL3S31H_T4w.d
|
522 |
+
|
523 |
+
OmaVH15G55H_VL3S31H
|
524 |
+
T4w
|
525 |
+
|
526 |
+
2.5
|
527 |
+
|
528 |
+
2
|
529 |
+
|
530 |
+
1.5
|
531 |
+
|
532 |
+
1
|
533 |
+
|
534 |
+
Complete sample degradation upon storage
|
535 |
+
|
536 |
+
0.5
|
537 |
+
|
538 |
+
0
|
539 |
+
|
540 |
+
x10 2
|
541 |
+
|
542 |
+
DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_OmaVH15W100b_VL3.d
|
543 |
+
|
544 |
+
OmaVH15W100b_VL3
|
545 |
+
|
546 |
+
2.5
|
547 |
+
|
548 |
+
2
|
549 |
+
|
550 |
+
1.5
|
551 |
+
|
552 |
+
1
|
553 |
+
|
554 |
+
0.5
|
555 |
+
|
556 |
+
0
|
557 |
+
|
558 |
+
x10 2 DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P1429_19JUN2020_PM_TFA_RAT_MS_OmaVH15W100b_VL3_T4w.d
|
559 |
+
|
560 |
+
OmaVH15W100b_VL3
|
561 |
+
|
562 |
+
T4w
|
563 |
+
|
564 |
+
2.5
|
565 |
+
|
566 |
+
2
|
567 |
+
|
568 |
+
1.5
|
569 |
+
|
570 |
+
1
|
571 |
+
|
572 |
+
Complete sample degradation upon storage
|
573 |
+
|
574 |
+
0.5
|
575 |
+
|
576 |
+
0
|
577 |
+
|
578 |
+
9
|
579 |
+
|
580 |
+
1
|
581 |
+
|
582 |
+
2
|
583 |
+
|
584 |
+
3
|
585 |
+
|
586 |
+
4
|
587 |
+
|
588 |
+
5
|
589 |
+
|
590 |
+
6
|
591 |
+
|
592 |
+
7
|
593 |
+
|
594 |
+
8
|
595 |
+
|
596 |
+
9
|
597 |
+
|
598 |
+
10
|
599 |
+
|
600 |
+
11
|
601 |
+
|
602 |
+
12
|
603 |
+
|
604 |
+
13
|
605 |
+
|
606 |
+
14
|
607 |
+
|
608 |
+
15
|
609 |
+
|
610 |
+
16
|
611 |
+
|
612 |
+
17
|
613 |
+
|
614 |
+
18
|
615 |
+
|
616 |
+
19
|
617 |
+
|
618 |
+
20
|
619 |
+
|
620 |
+
21
|
621 |
+
|
622 |
+
22
|
623 |
+
|
624 |
+
23
|
625 |
+
|
626 |
+
24
|
627 |
+
|
628 |
+
25
|
629 |
+
|
630 |
+
26
|
631 |
+
|
632 |
+
27
|
633 |
+
|
634 |
+
28
|
635 |
+
|
636 |
+
29
|
637 |
+
|
638 |
+
30
|
639 |
+
|
640 |
+
31
|
641 |
+
|
642 |
+
32
|
643 |
+
|
644 |
+
33
|
645 |
+
|
646 |
+
34
|
647 |
+
|
648 |
+
35
|
649 |
+
|
650 |
+
Response Units vs. Acquisition Time (min)
|
651 |
+
|
652 |
+
</figure>
|
653 |
+
|
654 |
+
|
655 |
+
<!-- PageBreak -->
|
656 |
+
|
657 |
+
|
658 |
+
<figure>
|
659 |
+
</figure>
|
660 |
+
|
661 |
+
|
662 |
+
# Results Ligelizumab mAb 37- Identity
|
663 |
+
|
664 |
+
|
665 |
+
<table>
|
666 |
+
<tr>
|
667 |
+
<th>RT</th>
|
668 |
+
<th>Mass</th>
|
669 |
+
<th>Sequence</th>
|
670 |
+
<th>Seq Loc</th>
|
671 |
+
<th>Tgt Seq Mass</th>
|
672 |
+
<th>Diff (Bio, ppm)</th>
|
673 |
+
<th>Pred Mods</th>
|
674 |
+
</tr>
|
675 |
+
<tr>
|
676 |
+
<td>22.08</td>
|
677 |
+
<td>1954.0192</td>
|
678 |
+
<td>QVQLVQSGAEVMKPGSSVK</td>
|
679 |
+
<td>HC(001-019)</td>
|
680 |
+
<td>1954.0194</td>
|
681 |
+
<td>-0.09</td>
|
682 |
+
<td>pyroGlu</td>
|
683 |
+
</tr>
|
684 |
+
<tr>
|
685 |
+
<td>5.72</td>
|
686 |
+
<td>492.2353</td>
|
687 |
+
<td>VSCK</td>
|
688 |
+
<td>HC(020-023)</td>
|
689 |
+
<td>492.2366</td>
|
690 |
+
<td>-2.69</td>
|
691 |
+
<td></td>
|
692 |
+
</tr>
|
693 |
+
<tr>
|
694 |
+
<td>27.24</td>
|
695 |
+
<td>1900.8885</td>
|
696 |
+
<td>ASGYTFSWYHLEWVR</td>
|
697 |
+
<td>HC(024-038)</td>
|
698 |
+
<td>1900.8897</td>
|
699 |
+
<td>-0.6</td>
|
700 |
+
<td></td>
|
701 |
+
</tr>
|
702 |
+
<tr>
|
703 |
+
<td>25.13</td>
|
704 |
+
<td>2791.2548</td>
|
705 |
+
<td>QAPGHGLEWMGEIDPGTFTTNYNEK</td>
|
706 |
+
<td>HC(039-063)</td>
|
707 |
+
<td>2791.2548</td>
|
708 |
+
<td>-0.01</td>
|
709 |
+
<td></td>
|
710 |
+
</tr>
|
711 |
+
<tr>
|
712 |
+
<td>8.34</td>
|
713 |
+
<td>293.1737</td>
|
714 |
+
<td>FK</td>
|
715 |
+
<td>HC(064-065)</td>
|
716 |
+
<td>293.1739</td>
|
717 |
+
<td>-0.98</td>
|
718 |
+
<td></td>
|
719 |
+
</tr>
|
720 |
+
<tr>
|
721 |
+
<td>2.01</td>
|
722 |
+
<td>245.1483</td>
|
723 |
+
<td>AR</td>
|
724 |
+
<td>HC(066-067)</td>
|
725 |
+
<td>245.1488</td>
|
726 |
+
<td>-2.18</td>
|
727 |
+
<td></td>
|
728 |
+
</tr>
|
729 |
+
<tr>
|
730 |
+
<td>24.88</td>
|
731 |
+
<td>2180.0311</td>
|
732 |
+
<td>VTFTADTSTSTAYMELSSLR</td>
|
733 |
+
<td>HC(068-087)</td>
|
734 |
+
<td>2180.0307</td>
|
735 |
+
<td>0.16</td>
|
736 |
+
<td></td>
|
737 |
+
</tr>
|
738 |
+
<tr>
|
739 |
+
<td>15.70</td>
|
740 |
+
<td>1333.5591</td>
|
741 |
+
<td>SEDTAVYYCAR</td>
|
742 |
+
<td>HC(088-098)</td>
|
743 |
+
<td>1333.5609</td>
|
744 |
+
<td>-1.36</td>
|
745 |
+
<td></td>
|
746 |
+
</tr>
|
747 |
+
<tr>
|
748 |
+
<td>24.80</td>
|
749 |
+
<td>3224.4449</td>
|
750 |
+
<td>FSHFSGSNHDYFDYWGQGTLVTVSSASTK</td>
|
751 |
+
<td>HC(099-127)</td>
|
752 |
+
<td>3224.4476</td>
|
753 |
+
<td>-0.82</td>
|
754 |
+
<td></td>
|
755 |
+
</tr>
|
756 |
+
<tr>
|
757 |
+
<td>22.47</td>
|
758 |
+
<td>1185.6394</td>
|
759 |
+
<td>GPSVFPLAPSSK</td>
|
760 |
+
<td>HC(128-139)</td>
|
761 |
+
<td>1185.6394</td>
|
762 |
+
<td>-0.02</td>
|
763 |
+
<td></td>
|
764 |
+
</tr>
|
765 |
+
<tr>
|
766 |
+
<td>20.35</td>
|
767 |
+
<td>1320.6699</td>
|
768 |
+
<td>STSGGTAALGCLVK</td>
|
769 |
+
<td>HC(140-153)</td>
|
770 |
+
<td>1320.6708</td>
|
771 |
+
<td>-0.63</td>
|
772 |
+
<td></td>
|
773 |
+
</tr>
|
774 |
+
<tr>
|
775 |
+
<td>31.68</td>
|
776 |
+
<td>8014.9553</td>
|
777 |
+
<td>STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK</td>
|
778 |
+
<td>HC(140-216)</td>
|
779 |
+
<td>8014.9674</td>
|
780 |
+
<td>-1.5</td>
|
781 |
+
<td></td>
|
782 |
+
</tr>
|
783 |
+
<tr>
|
784 |
+
<td>30.99</td>
|
785 |
+
<td>6712.3060</td>
|
786 |
+
<td>DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK</td>
|
787 |
+
<td>HC(154-216)</td>
|
788 |
+
<td>6712.3072</td>
|
789 |
+
<td>-0.18</td>
|
790 |
+
<td></td>
|
791 |
+
</tr>
|
792 |
+
<tr>
|
793 |
+
<td>3.77</td>
|
794 |
+
<td>360.2002</td>
|
795 |
+
<td>VDK</td>
|
796 |
+
<td>HC(217-219)</td>
|
797 |
+
<td>360.2009</td>
|
798 |
+
<td>-1.87</td>
|
799 |
+
<td></td>
|
800 |
+
</tr>
|
801 |
+
<tr>
|
802 |
+
<td>3.06</td>
|
803 |
+
<td>488.2955</td>
|
804 |
+
<td>VDKK</td>
|
805 |
+
<td>HC(217-220)</td>
|
806 |
+
<td>488.2959</td>
|
807 |
+
<td>-0.65</td>
|
808 |
+
<td></td>
|
809 |
+
</tr>
|
810 |
+
<tr>
|
811 |
+
<td>8.41</td>
|
812 |
+
<td>599.3643</td>
|
813 |
+
<td>KVEPK</td>
|
814 |
+
<td>HC(220-224)</td>
|
815 |
+
<td>599.3643</td>
|
816 |
+
<td>-0.02</td>
|
817 |
+
<td></td>
|
818 |
+
</tr>
|
819 |
+
<tr>
|
820 |
+
<td>7.89</td>
|
821 |
+
<td>471.2683</td>
|
822 |
+
<td>VEPK</td>
|
823 |
+
<td>HC(221-224)</td>
|
824 |
+
<td>471.2693</td>
|
825 |
+
<td>-2.08</td>
|
826 |
+
<td></td>
|
827 |
+
</tr>
|
828 |
+
<tr>
|
829 |
+
<td>2.05</td>
|
830 |
+
<td>508.1940</td>
|
831 |
+
<td>SCDK</td>
|
832 |
+
<td>HC(225-228)</td>
|
833 |
+
<td>508.1952</td>
|
834 |
+
<td>-2.27</td>
|
835 |
+
<td></td>
|
836 |
+
</tr>
|
837 |
+
<tr>
|
838 |
+
<td>27.42</td>
|
839 |
+
<td>3333.6280</td>
|
840 |
+
<td>SCDKTHTCPPCPAPELLGGPSVFLFPPKPK</td>
|
841 |
+
<td>HC(225-254)</td>
|
842 |
+
<td>3333.6349</td>
|
843 |
+
<td>-2.07</td>
|
844 |
+
<td></td>
|
845 |
+
</tr>
|
846 |
+
<tr>
|
847 |
+
<td>28.13</td>
|
848 |
+
<td>2843.4478</td>
|
849 |
+
<td>THTCPPCPAPELLGGPSVFLFPPKPK</td>
|
850 |
+
<td>HC(229-254)</td>
|
851 |
+
<td>2843.4503</td>
|
852 |
+
<td>-0.87</td>
|
853 |
+
<td></td>
|
854 |
+
</tr>
|
855 |
+
<tr>
|
856 |
+
<td>17.74</td>
|
857 |
+
<td>880.4646</td>
|
858 |
+
<td>DTLYITR</td>
|
859 |
+
<td>HC(255-261)</td>
|
860 |
+
<td>880.4654</td>
|
861 |
+
<td>-1.01</td>
|
862 |
+
<td></td>
|
863 |
+
</tr>
|
864 |
+
<tr>
|
865 |
+
<td>22.01</td>
|
866 |
+
<td>2166.0153</td>
|
867 |
+
<td>EPEVTCVVVDVSHEDPEVK</td>
|
868 |
+
<td>HC(262-280)</td>
|
869 |
+
<td>2166.0151</td>
|
870 |
+
<td>0.1</td>
|
871 |
+
<td></td>
|
872 |
+
</tr>
|
873 |
+
<tr>
|
874 |
+
<td>22.33</td>
|
875 |
+
<td>1676.7946</td>
|
876 |
+
<td>FNWYVDGVEVHNAK</td>
|
877 |
+
<td>HC(281-294)</td>
|
878 |
+
<td>1676.7947</td>
|
879 |
+
<td>-0.08</td>
|
880 |
+
<td></td>
|
881 |
+
</tr>
|
882 |
+
<tr>
|
883 |
+
<td>4.62</td>
|
884 |
+
<td>500.3064</td>
|
885 |
+
<td>TKPR</td>
|
886 |
+
<td>HC(295-298)</td>
|
887 |
+
<td>500.3071</td>
|
888 |
+
<td>-1.34</td>
|
889 |
+
<td></td>
|
890 |
+
</tr>
|
891 |
+
<tr>
|
892 |
+
<td>11.17</td>
|
893 |
+
<td>2633.0333</td>
|
894 |
+
<td>EEQYNSTYR</td>
|
895 |
+
<td>HC(299-307)</td>
|
896 |
+
<td>2633.0386</td>
|
897 |
+
<td>-2.04</td>
|
898 |
+
<td>G0F</td>
|
899 |
+
</tr>
|
900 |
+
<tr>
|
901 |
+
<td>28.69</td>
|
902 |
+
<td>1806.9974</td>
|
903 |
+
<td>VVSVLTVLHQDWLNGK</td>
|
904 |
+
<td>HC(308-323)</td>
|
905 |
+
<td>1806.9992</td>
|
906 |
+
<td>-0.99</td>
|
907 |
+
<td></td>
|
908 |
+
</tr>
|
909 |
+
<tr>
|
910 |
+
<td>27.74</td>
|
911 |
+
<td>2227.1996</td>
|
912 |
+
<td>VVSVLTVLHQDWLNGKEYK</td>
|
913 |
+
<td>HC(308-326)</td>
|
914 |
+
<td>2227.2001</td>
|
915 |
+
<td>-0.24</td>
|
916 |
+
<td></td>
|
917 |
+
</tr>
|
918 |
+
<tr>
|
919 |
+
<td>6.58</td>
|
920 |
+
<td>438.2106</td>
|
921 |
+
<td>EYK</td>
|
922 |
+
<td>HC(324-326)</td>
|
923 |
+
<td>438.2115</td>
|
924 |
+
<td>-1.96</td>
|
925 |
+
<td></td>
|
926 |
+
</tr>
|
927 |
+
<tr>
|
928 |
+
<td>1.98</td>
|
929 |
+
<td>306.1355</td>
|
930 |
+
<td>CK</td>
|
931 |
+
<td>HC(327-328)</td>
|
932 |
+
<td>306.1362</td>
|
933 |
+
<td>-2.24</td>
|
934 |
+
<td></td>
|
935 |
+
</tr>
|
936 |
+
<tr>
|
937 |
+
<td>3.17</td>
|
938 |
+
<td>446.2480</td>
|
939 |
+
<td>VSNK</td>
|
940 |
+
<td>HC(329-332)</td>
|
941 |
+
<td>446.2489</td>
|
942 |
+
<td>-1.93</td>
|
943 |
+
<td></td>
|
944 |
+
</tr>
|
945 |
+
<tr>
|
946 |
+
<td>17.99</td>
|
947 |
+
<td>837.4955</td>
|
948 |
+
<td>ALPAPIEK</td>
|
949 |
+
<td>HC(333-340)</td>
|
950 |
+
<td>837.4960</td>
|
951 |
+
<td>-0.59</td>
|
952 |
+
<td></td>
|
953 |
+
</tr>
|
954 |
+
<tr>
|
955 |
+
<td>8.03</td>
|
956 |
+
<td>447.2685</td>
|
957 |
+
<td>TISK</td>
|
958 |
+
<td>HC(341-344)</td>
|
959 |
+
<td>447.2693</td>
|
960 |
+
<td>-1.69</td>
|
961 |
+
<td></td>
|
962 |
+
</tr>
|
963 |
+
<tr>
|
964 |
+
<td>6.37</td>
|
965 |
+
<td>655.3768</td>
|
966 |
+
<td>AKGQPR</td>
|
967 |
+
<td>HC(345-350)</td>
|
968 |
+
<td>655.3766</td>
|
969 |
+
<td>0.34</td>
|
970 |
+
<td></td>
|
971 |
+
</tr>
|
972 |
+
</table>
|
973 |
+
|
974 |
+
|
975 |
+
<figure>
|
976 |
+
|
977 |
+
RIC
|
978 |
+
|
979 |
+
</figure>
|
980 |
+
|
981 |
+
|
982 |
+
<!-- PageFooter="biologics" -->
|
983 |
+
<!-- PageNumber="10" -->
|
984 |
+
<!-- PageBreak -->
|
985 |
+
|
986 |
+
|
987 |
+
<figure>
|
988 |
+
</figure>
|
989 |
+
|
990 |
+
|
991 |
+
# Results Ligelizumab mAb 37- Identity
|
992 |
+
|
993 |
+
|
994 |
+
<table>
|
995 |
+
<tr>
|
996 |
+
<th>RT</th>
|
997 |
+
<th>Mass</th>
|
998 |
+
<th>Sequence</th>
|
999 |
+
<th>Seq Loc</th>
|
1000 |
+
<th>Tgt Seq Mass</th>
|
1001 |
+
<th>Diff (Bio, ppm)</th>
|
1002 |
+
<th>Pred Mods</th>
|
1003 |
+
</tr>
|
1004 |
+
<tr>
|
1005 |
+
<td>5.33</td>
|
1006 |
+
<td>456.2435</td>
|
1007 |
+
<td>GQPR</td>
|
1008 |
+
<td>HC(347-350)</td>
|
1009 |
+
<td>456.2445</td>
|
1010 |
+
<td>-2.18</td>
|
1011 |
+
<td></td>
|
1012 |
+
</tr>
|
1013 |
+
<tr>
|
1014 |
+
<td>18.59</td>
|
1015 |
+
<td>1285.6662</td>
|
1016 |
+
<td>EPQVYTLPPSR</td>
|
1017 |
+
<td>HC(351-361)</td>
|
1018 |
+
<td>1285.6667</td>
|
1019 |
+
<td>-0.32</td>
|
1020 |
+
<td></td>
|
1021 |
+
</tr>
|
1022 |
+
<tr>
|
1023 |
+
<td>19.68</td>
|
1024 |
+
<td>1871.9613</td>
|
1025 |
+
<td>EPQVYTLPPSRDELTK</td>
|
1026 |
+
<td>HC(351-366)</td>
|
1027 |
+
<td>1871.9629</td>
|
1028 |
+
<td>-0.85</td>
|
1029 |
+
<td></td>
|
1030 |
+
</tr>
|
1031 |
+
<tr>
|
1032 |
+
<td>10.34</td>
|
1033 |
+
<td>604.3060</td>
|
1034 |
+
<td>DELTK</td>
|
1035 |
+
<td>HC(362-366)</td>
|
1036 |
+
<td>604.3068</td>
|
1037 |
+
<td>-1.39</td>
|
1038 |
+
<td></td>
|
1039 |
+
</tr>
|
1040 |
+
<tr>
|
1041 |
+
<td>21.70</td>
|
1042 |
+
<td>1160.6224</td>
|
1043 |
+
<td>NQVSLTCLVK</td>
|
1044 |
+
<td>HC(367-376)</td>
|
1045 |
+
<td>1160.6224</td>
|
1046 |
+
<td>0</td>
|
1047 |
+
<td></td>
|
1048 |
+
</tr>
|
1049 |
+
<tr>
|
1050 |
+
<td>24.21</td>
|
1051 |
+
<td>2543.1234</td>
|
1052 |
+
<td>GFYPSDIAVEWESNGQPENNYK</td>
|
1053 |
+
<td>HC(377-398)</td>
|
1054 |
+
<td>2543.1241</td>
|
1055 |
+
<td>-0.27</td>
|
1056 |
+
<td></td>
|
1057 |
+
</tr>
|
1058 |
+
<tr>
|
1059 |
+
<td>25.93</td>
|
1060 |
+
<td>1872.9143</td>
|
1061 |
+
<td>TTPPVLDSDGSFFLYSK</td>
|
1062 |
+
<td>HC(399-415)</td>
|
1063 |
+
<td>1872.9146</td>
|
1064 |
+
<td>-0.14</td>
|
1065 |
+
<td></td>
|
1066 |
+
</tr>
|
1067 |
+
<tr>
|
1068 |
+
<td>12.40</td>
|
1069 |
+
<td>574.3323</td>
|
1070 |
+
<td>LTVDK</td>
|
1071 |
+
<td>HC(416-420)</td>
|
1072 |
+
<td>574.3326</td>
|
1073 |
+
<td>-0.6</td>
|
1074 |
+
<td></td>
|
1075 |
+
</tr>
|
1076 |
+
<tr>
|
1077 |
+
<td>23.22</td>
|
1078 |
+
<td>2019.9295</td>
|
1079 |
+
<td>WQQGNVFSCSVMHEALK</td>
|
1080 |
+
<td>HC(423-439)</td>
|
1081 |
+
<td>2019.9295</td>
|
1082 |
+
<td>0.02</td>
|
1083 |
+
<td></td>
|
1084 |
+
</tr>
|
1085 |
+
<tr>
|
1086 |
+
<td>12.49</td>
|
1087 |
+
<td>822.4022</td>
|
1088 |
+
<td>FHYTQK</td>
|
1089 |
+
<td>HC(440-445)</td>
|
1090 |
+
<td>822.4024</td>
|
1091 |
+
<td>-0.26</td>
|
1092 |
+
<td></td>
|
1093 |
+
</tr>
|
1094 |
+
<tr>
|
1095 |
+
<td>18.19</td>
|
1096 |
+
<td>659.3484</td>
|
1097 |
+
<td>SLSLSPG</td>
|
1098 |
+
<td>HC(446-452)</td>
|
1099 |
+
<td>659.3490</td>
|
1100 |
+
<td>-0.99</td>
|
1101 |
+
<td></td>
|
1102 |
+
</tr>
|
1103 |
+
<tr>
|
1104 |
+
<td>16.86</td>
|
1105 |
+
<td>787.4437</td>
|
1106 |
+
<td>SLSLSPGK</td>
|
1107 |
+
<td>HC(446-453)</td>
|
1108 |
+
<td>787.4440</td>
|
1109 |
+
<td>-0.36</td>
|
1110 |
+
<td></td>
|
1111 |
+
</tr>
|
1112 |
+
<tr>
|
1113 |
+
<td>21.23</td>
|
1114 |
+
<td>1900.9548</td>
|
1115 |
+
<td>EIVMTQSPATLSVSPGER</td>
|
1116 |
+
<td>LC(001-018)</td>
|
1117 |
+
<td>1900.9564</td>
|
1118 |
+
<td>-0.87</td>
|
1119 |
+
<td></td>
|
1120 |
+
</tr>
|
1121 |
+
<tr>
|
1122 |
+
<td>11.12</td>
|
1123 |
+
<td>706.3424</td>
|
1124 |
+
<td>ATLSCR</td>
|
1125 |
+
<td>LC(019-024)</td>
|
1126 |
+
<td>706.3432</td>
|
1127 |
+
<td>-1.12</td>
|
1128 |
+
<td></td>
|
1129 |
+
</tr>
|
1130 |
+
<tr>
|
1131 |
+
<td>19.07</td>
|
1132 |
+
<td>2366.1878</td>
|
1133 |
+
<td>ASQSIGTNIHWYQQKPGQAPR</td>
|
1134 |
+
<td>LC(025-045)</td>
|
1135 |
+
<td>2366.1880</td>
|
1136 |
+
<td>-0.08</td>
|
1137 |
+
<td></td>
|
1138 |
+
</tr>
|
1139 |
+
<tr>
|
1140 |
+
<td>25.77</td>
|
1141 |
+
<td>1751.9464</td>
|
1142 |
+
<td>LLIYYASESISGIPAR</td>
|
1143 |
+
<td>LC(046-061)</td>
|
1144 |
+
<td>1751.9458</td>
|
1145 |
+
<td>0.34</td>
|
1146 |
+
<td></td>
|
1147 |
+
</tr>
|
1148 |
+
<tr>
|
1149 |
+
<td>30.53</td>
|
1150 |
+
<td>4601.0567</td>
|
1151 |
+
<td>FSGSGSGTEFTLTISSLQSEDFAVYYCQQSWSWPTTFGGGTK</td>
|
1152 |
+
<td>LC(062-103)</td>
|
1153 |
+
<td>4601.0646</td>
|
1154 |
+
<td>-1.72</td>
|
1155 |
+
<td></td>
|
1156 |
+
</tr>
|
1157 |
+
<tr>
|
1158 |
+
<td>12.43</td>
|
1159 |
+
<td>487.3001</td>
|
1160 |
+
<td>VEIK</td>
|
1161 |
+
<td>LC(104-107)</td>
|
1162 |
+
<td>487.3006</td>
|
1163 |
+
<td>-1.08</td>
|
1164 |
+
<td></td>
|
1165 |
+
</tr>
|
1166 |
+
<tr>
|
1167 |
+
<td>11.85</td>
|
1168 |
+
<td>643.4010</td>
|
1169 |
+
<td>VEIKR</td>
|
1170 |
+
<td>LC(104-108)</td>
|
1171 |
+
<td>643.4017</td>
|
1172 |
+
<td>-1.04</td>
|
1173 |
+
<td></td>
|
1174 |
+
</tr>
|
1175 |
+
<tr>
|
1176 |
+
<td>26.29</td>
|
1177 |
+
<td>2101.1184</td>
|
1178 |
+
<td>RTVAAPSVFIFPPSDEQLK</td>
|
1179 |
+
<td>LC(108-126)</td>
|
1180 |
+
<td>2101.1208</td>
|
1181 |
+
<td>-1.16</td>
|
1182 |
+
<td></td>
|
1183 |
+
</tr>
|
1184 |
+
<tr>
|
1185 |
+
<td>27.42</td>
|
1186 |
+
<td>1945.0183</td>
|
1187 |
+
<td>TVAAPSVFIFPPSDEQLK</td>
|
1188 |
+
<td>LC(109-126)</td>
|
1189 |
+
<td>1945.0197</td>
|
1190 |
+
<td>-0.71</td>
|
1191 |
+
<td></td>
|
1192 |
+
</tr>
|
1193 |
+
<tr>
|
1194 |
+
<td>33.07</td>
|
1195 |
+
<td>3723.8910</td>
|
1196 |
+
<td>TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPR</td>
|
1197 |
+
<td>LC(109-142)</td>
|
1198 |
+
<td>3723.8971</td>
|
1199 |
+
<td>-1.64</td>
|
1200 |
+
<td></td>
|
1201 |
+
</tr>
|
1202 |
+
<tr>
|
1203 |
+
<td>28.60</td>
|
1204 |
+
<td>1796.8863</td>
|
1205 |
+
<td>SGTASVVCLLNNFYPR</td>
|
1206 |
+
<td>LC(127-142)</td>
|
1207 |
+
<td>1796.8880</td>
|
1208 |
+
<td>-0.92</td>
|
1209 |
+
<td></td>
|
1210 |
+
</tr>
|
1211 |
+
<tr>
|
1212 |
+
<td>1.98</td>
|
1213 |
+
<td>346.1845</td>
|
1214 |
+
<td>EAK</td>
|
1215 |
+
<td>LC(143-145)</td>
|
1216 |
+
<td>346.1852</td>
|
1217 |
+
<td>-2.12</td>
|
1218 |
+
<td></td>
|
1219 |
+
</tr>
|
1220 |
+
<tr>
|
1221 |
+
<td>14.20</td>
|
1222 |
+
<td>559.3115</td>
|
1223 |
+
<td>VQWK</td>
|
1224 |
+
<td>LC(146-149)</td>
|
1225 |
+
<td>559.3118</td>
|
1226 |
+
<td>-0.58</td>
|
1227 |
+
<td></td>
|
1228 |
+
</tr>
|
1229 |
+
<tr>
|
1230 |
+
<td>13.95</td>
|
1231 |
+
<td>2134.9593</td>
|
1232 |
+
<td>VDNALQSGNSQESVTEQDSK</td>
|
1233 |
+
<td>LC(150-169)</td>
|
1234 |
+
<td>2134.9615</td>
|
1235 |
+
<td>-1.01</td>
|
1236 |
+
<td></td>
|
1237 |
+
</tr>
|
1238 |
+
<tr>
|
1239 |
+
<td>21.54</td>
|
1240 |
+
<td>3618.6975</td>
|
1241 |
+
<td>VDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSK</td>
|
1242 |
+
<td>LC(150-183)</td>
|
1243 |
+
<td>3618.7021</td>
|
1244 |
+
<td>-1.26</td>
|
1245 |
+
<td></td>
|
1246 |
+
</tr>
|
1247 |
+
<tr>
|
1248 |
+
<td>21.61</td>
|
1249 |
+
<td>1501.7507</td>
|
1250 |
+
<td>DSTYSLSSTLTLSK</td>
|
1251 |
+
<td>LC(170-183)</td>
|
1252 |
+
<td>1501.7512</td>
|
1253 |
+
<td>-0.34</td>
|
1254 |
+
<td></td>
|
1255 |
+
</tr>
|
1256 |
+
<tr>
|
1257 |
+
<td>8.49</td>
|
1258 |
+
<td>624.2752</td>
|
1259 |
+
<td>ADYEK</td>
|
1260 |
+
<td>LC(184-188)</td>
|
1261 |
+
<td>624.2755</td>
|
1262 |
+
<td>-0.47</td>
|
1263 |
+
<td></td>
|
1264 |
+
</tr>
|
1265 |
+
<tr>
|
1266 |
+
<td>17.03</td>
|
1267 |
+
<td>2140.0696</td>
|
1268 |
+
<td>HKVYACEVTHQGLSSPVTK</td>
|
1269 |
+
<td>LC(189-207)</td>
|
1270 |
+
<td>2140.0735</td>
|
1271 |
+
<td>-1.84</td>
|
1272 |
+
<td></td>
|
1273 |
+
</tr>
|
1274 |
+
<tr>
|
1275 |
+
<td>17.75</td>
|
1276 |
+
<td>1874.9187</td>
|
1277 |
+
<td>VYACEVTHQGLSSPVTK</td>
|
1278 |
+
<td>LC(191-207)</td>
|
1279 |
+
<td>1874.9197</td>
|
1280 |
+
<td>-0.5</td>
|
1281 |
+
<td></td>
|
1282 |
+
</tr>
|
1283 |
+
<tr>
|
1284 |
+
<td>10.15</td>
|
1285 |
+
<td>522.2544</td>
|
1286 |
+
<td>SFNR</td>
|
1287 |
+
<td>LC(208-211)</td>
|
1288 |
+
<td>522.2551</td>
|
1289 |
+
<td>-1.22</td>
|
1290 |
+
<td></td>
|
1291 |
+
</tr>
|
1292 |
+
<tr>
|
1293 |
+
<td>2.06</td>
|
1294 |
+
<td>364.1044</td>
|
1295 |
+
<td>GEC</td>
|
1296 |
+
<td>LC(212-214)</td>
|
1297 |
+
<td>364.1053</td>
|
1298 |
+
<td>-2.35</td>
|
1299 |
+
<td></td>
|
1300 |
+
</tr>
|
1301 |
+
</table>
|
1302 |
+
|
1303 |
+
|
1304 |
+
<figure>
|
1305 |
+
</figure>
|
1306 |
+
|
1307 |
+
|
1308 |
+
RIC
|
1309 |
+
|
1310 |
+
<!-- PageFooter="biologics" -->
|
1311 |
+
<!-- PageNumber="11" -->
|
1312 |
+
<!-- PageBreak -->
|
1313 |
+
|
1314 |
+
|
1315 |
+
<figure>
|
1316 |
+
</figure>
|
1317 |
+
|
1318 |
+
|
1319 |
+
# Results Ligelizumab mAb 37- Identity
|
1320 |
+
|
1321 |
+
\>HEAVY CHAIN: Ligelizumab mAb 37
|
1322 |
+
|
1323 |
+
QVQLVQSGAEVMKPGSSVKVSCKASGYTFSWYHLEWVRQAPGHGLEWMGEIDPGTFTTNYNEKFKARVTFTADTSTSTAYMELSSLR
|
1324 |
+
SEDTAVYYCARFSHESGSNHDYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH
|
1325 |
+
TFPAVLOSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLYITR
|
1326 |
+
EPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQ
|
1327 |
+
PREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMH
|
1328 |
+
EALKFHYTOKSLSLSPGK
|
1329 |
+
|
1330 |
+
\>LIGHT CHAIN: Ligelizumab mAb 37
|
1331 |
+
|
1332 |
+
EIVMTQSPATLSVSPGERATLSCRASOSIGTNIHWYQQKPGQAPRLLIYYASESISGIPARFSGSGSGTEFTLTISSLOSEDFAVYY
|
1333 |
+
COOSWSWPTTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYS
|
1334 |
+
LSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
|
1335 |
+
|
1336 |
+
Sequence coverage of 99.7%
|
1337 |
+
|
1338 |
+
|
1339 |
+
<figure>
|
1340 |
+
|
1341 |
+
RIC
|
1342 |
+
|
1343 |
+
</figure>
|
1344 |
+
|
1345 |
+
|
1346 |
+
<!-- PageFooter="biologics" -->
|
1347 |
+
<!-- PageNumber="12" -->
|
1348 |
+
<!-- PageBreak -->
|
1349 |
+
|
1350 |
+
|
1351 |
+
<figure>
|
1352 |
+
</figure>
|
1353 |
+
|
1354 |
+
|
1355 |
+
# Results Ligelizumab mAb 37- Modifications (oxidation)
|
1356 |
+
|
1357 |
+
|
1358 |
+
<table>
|
1359 |
+
<tr>
|
1360 |
+
<th>Sequence</th>
|
1361 |
+
<th>Seq Loc</th>
|
1362 |
+
<th>Modification</th>
|
1363 |
+
<th>Ligelizumab</th>
|
1364 |
+
<th>Ligelizumab T6w</th>
|
1365 |
+
</tr>
|
1366 |
+
<tr>
|
1367 |
+
<td rowspan="2">pyroQVQLVQSGAEVMKPGSSVK</td>
|
1368 |
+
<td rowspan="2">HC(1-19)</td>
|
1369 |
+
<td rowspan="2">Oxidation</td>
|
1370 |
+
<td rowspan="2">1.6 98.4</td>
|
1371 |
+
<td>20.3</td>
|
1372 |
+
</tr>
|
1373 |
+
<tr>
|
1374 |
+
<td>79.7</td>
|
1375 |
+
</tr>
|
1376 |
+
<tr>
|
1377 |
+
<td rowspan="2">ASGYTFSWYHLEWVR</td>
|
1378 |
+
<td rowspan="2">HC(24-38)</td>
|
1379 |
+
<td rowspan="2">Oxidation</td>
|
1380 |
+
<td rowspan="2">1.5 98.5</td>
|
1381 |
+
<td>5.5</td>
|
1382 |
+
</tr>
|
1383 |
+
<tr>
|
1384 |
+
<td>94.5</td>
|
1385 |
+
</tr>
|
1386 |
+
<tr>
|
1387 |
+
<td rowspan="2">QAPGHGLEWMGEIDPGTFTTNYNEK</td>
|
1388 |
+
<td rowspan="2">HC(36-63)</td>
|
1389 |
+
<td rowspan="2">Oxidation</td>
|
1390 |
+
<td>0.8</td>
|
1391 |
+
<td>0.7</td>
|
1392 |
+
</tr>
|
1393 |
+
<tr>
|
1394 |
+
<td>99.2</td>
|
1395 |
+
<td>99.3</td>
|
1396 |
+
</tr>
|
1397 |
+
<tr>
|
1398 |
+
<td>VTFTADTSTSTAYMELSSLR</td>
|
1399 |
+
<td>HC(68-87)</td>
|
1400 |
+
<td>Oxidation</td>
|
1401 |
+
<td>0.9 99.1</td>
|
1402 |
+
<td>1.2 98.8</td>
|
1403 |
+
</tr>
|
1404 |
+
<tr>
|
1405 |
+
<td>FSHFSGSNHDYFDYWGQGTLVTVSSASTK</td>
|
1406 |
+
<td>HC(99-127)</td>
|
1407 |
+
<td>Oxidation</td>
|
1408 |
+
<td>0.5 99.5</td>
|
1409 |
+
<td>0.7 99.3</td>
|
1410 |
+
</tr>
|
1411 |
+
<tr>
|
1412 |
+
<td>WQQGNVFSCSVMHEALK</td>
|
1413 |
+
<td>HC(423-439)</td>
|
1414 |
+
<td>Oxidation</td>
|
1415 |
+
<td>2.3 97.7</td>
|
1416 |
+
<td>10.6 89.4</td>
|
1417 |
+
</tr>
|
1418 |
+
<tr>
|
1419 |
+
<td>EIVMTQSPATLSVSPGER</td>
|
1420 |
+
<td>LC(1-18)</td>
|
1421 |
+
<td>Oxidation</td>
|
1422 |
+
<td>1.8 98.2</td>
|
1423 |
+
<td>2.2 97.8</td>
|
1424 |
+
</tr>
|
1425 |
+
</table>
|
1426 |
+
|
1427 |
+
BOLD: relevant increase upon stressing
|
1428 |
+
|
1429 |
+
Note: Only modifications > 0.5% are reported
|
1430 |
+
|
1431 |
+
|
1432 |
+
<figure>
|
1433 |
+
</figure>
|
1434 |
+
|
1435 |
+
|
1436 |
+
RIC
|
1437 |
+
biologics
|
1438 |
+
|
1439 |
+
<!-- PageNumber="13" -->
|
1440 |
+
<!-- PageBreak -->
|
1441 |
+
|
1442 |
+
|
1443 |
+
<figure>
|
1444 |
+
</figure>
|
1445 |
+
|
1446 |
+
|
1447 |
+
# Results Ligelizumab mAb 37- Modifications (deam/isoD)
|
1448 |
+
|
1449 |
+
|
1450 |
+
<table>
|
1451 |
+
<tr>
|
1452 |
+
<th>Sequence</th>
|
1453 |
+
<th>Seq Loc</th>
|
1454 |
+
<th>Modification</th>
|
1455 |
+
<th>Ligelizumab</th>
|
1456 |
+
<th>Ligelizumab T6w</th>
|
1457 |
+
</tr>
|
1458 |
+
<tr>
|
1459 |
+
<td rowspan="2">FNWYVDGVEVHNAK</td>
|
1460 |
+
<td rowspan="2">HC(281-294)</td>
|
1461 |
+
<td>IsoD</td>
|
1462 |
+
<td>0.7</td>
|
1463 |
+
<td>1.6</td>
|
1464 |
+
</tr>
|
1465 |
+
<tr>
|
1466 |
+
<td></td>
|
1467 |
+
<td>99.3</td>
|
1468 |
+
<td>98.4</td>
|
1469 |
+
</tr>
|
1470 |
+
<tr>
|
1471 |
+
<td rowspan="3">VVSVLTVLHQDWLNGK</td>
|
1472 |
+
<td rowspan="3">HC(308-323)</td>
|
1473 |
+
<td>Deam</td>
|
1474 |
+
<td>1.0</td>
|
1475 |
+
<td>1.4</td>
|
1476 |
+
</tr>
|
1477 |
+
<tr>
|
1478 |
+
<td></td>
|
1479 |
+
<td>97.4</td>
|
1480 |
+
<td>96.1</td>
|
1481 |
+
</tr>
|
1482 |
+
<tr>
|
1483 |
+
<td>Succ</td>
|
1484 |
+
<td>1.6</td>
|
1485 |
+
<td>2.5</td>
|
1486 |
+
</tr>
|
1487 |
+
<tr>
|
1488 |
+
<td rowspan="2">NQVSLTCLVK</td>
|
1489 |
+
<td rowspan="2">HC(367-376)</td>
|
1490 |
+
<td>Deam</td>
|
1491 |
+
<td>2.5</td>
|
1492 |
+
<td>3.5</td>
|
1493 |
+
</tr>
|
1494 |
+
<tr>
|
1495 |
+
<td></td>
|
1496 |
+
<td>97.5</td>
|
1497 |
+
<td>96.5</td>
|
1498 |
+
</tr>
|
1499 |
+
<tr>
|
1500 |
+
<td rowspan="2">GFYPSDIAVEWESNGQPENNYK</td>
|
1501 |
+
<td rowspan="2">HC(377-398)</td>
|
1502 |
+
<td>Deam</td>
|
1503 |
+
<td>4.4</td>
|
1504 |
+
<td>24.6</td>
|
1505 |
+
</tr>
|
1506 |
+
<tr>
|
1507 |
+
<td></td>
|
1508 |
+
<td>95.6</td>
|
1509 |
+
<td>75.4</td>
|
1510 |
+
</tr>
|
1511 |
+
<tr>
|
1512 |
+
<td>TVAAPSVFIFPPSDEQLK</td>
|
1513 |
+
<td>LC(109-126)</td>
|
1514 |
+
<td>IsoD</td>
|
1515 |
+
<td>0.0 100.0</td>
|
1516 |
+
<td>0.9 99.1</td>
|
1517 |
+
</tr>
|
1518 |
+
<tr>
|
1519 |
+
<td></td>
|
1520 |
+
<td rowspan="2">LC(127-142)</td>
|
1521 |
+
<td>Deam</td>
|
1522 |
+
<td>0.9</td>
|
1523 |
+
<td>0.8</td>
|
1524 |
+
</tr>
|
1525 |
+
<tr>
|
1526 |
+
<td>SGTASVVCLLNNFYPR</td>
|
1527 |
+
<td></td>
|
1528 |
+
<td>99.1</td>
|
1529 |
+
<td>99.2</td>
|
1530 |
+
</tr>
|
1531 |
+
<tr>
|
1532 |
+
<td>VDNALQSGNSQESVTEQDSK</td>
|
1533 |
+
<td>LC(150-169)</td>
|
1534 |
+
<td>IsoD</td>
|
1535 |
+
<td>0.5 99.5</td>
|
1536 |
+
<td>1.0 99.0</td>
|
1537 |
+
</tr>
|
1538 |
+
</table>
|
1539 |
+
|
1540 |
+
BOLD: relevant increase upon stressing
|
1541 |
+
|
1542 |
+
Note: Only modifications > 0.5% are reported
|
1543 |
+
|
1544 |
+
|
1545 |
+
<figure>
|
1546 |
+
</figure>
|
1547 |
+
|
1548 |
+
|
1549 |
+
RIC
|
1550 |
+
biologics
|
1551 |
+
|
1552 |
+
<!-- PageNumber="14" -->
|
1553 |
+
<!-- PageBreak -->
|
1554 |
+
|
1555 |
+
|
1556 |
+
<figure>
|
1557 |
+
</figure>
|
1558 |
+
|
1559 |
+
|
1560 |
+
# Results Ligelizumab mAb 37 - Modifications (pyroE)
|
1561 |
+
|
1562 |
+
|
1563 |
+
<table>
|
1564 |
+
<tr>
|
1565 |
+
<th>Sequence</th>
|
1566 |
+
<th>Seq Loc</th>
|
1567 |
+
<th>Modification</th>
|
1568 |
+
<th>Ligelizumab</th>
|
1569 |
+
<th>Ligelizumab T6w</th>
|
1570 |
+
</tr>
|
1571 |
+
<tr>
|
1572 |
+
<td>QVQLVQSGAEVMKPGSSVK</td>
|
1573 |
+
<td>HC(1-19)</td>
|
1574 |
+
<td>PyroE</td>
|
1575 |
+
<td>100.0 0.0</td>
|
1576 |
+
<td>100.0 0.0</td>
|
1577 |
+
</tr>
|
1578 |
+
<tr>
|
1579 |
+
<td>EIVMTQSPATLSVSPGER</td>
|
1580 |
+
<td>LC(1-18)</td>
|
1581 |
+
<td>PyroE</td>
|
1582 |
+
<td>1.1 98.9</td>
|
1583 |
+
<td>2.0 98.0</td>
|
1584 |
+
</tr>
|
1585 |
+
</table>
|
1586 |
+
|
1587 |
+
|
1588 |
+
<figure>
|
1589 |
+
|
1590 |
+
RIC
|
1591 |
+
|
1592 |
+
</figure>
|
1593 |
+
|
1594 |
+
|
1595 |
+
<!-- PageFooter="biologics" -->
|
1596 |
+
<!-- PageNumber="15" -->
|
1597 |
+
<!-- PageBreak -->
|
1598 |
+
|
1599 |
+
|
1600 |
+
<figure>
|
1601 |
+
</figure>
|
1602 |
+
|
1603 |
+
|
1604 |
+
## Results Ligelizumab mAB 37- Modifications
|
1605 |
+
|
1606 |
+
\>HEAVY CHAIN: Ligelizumab
|
1607 |
+
|
1608 |
+
QVQLVQSGAEVMKPGSSVKVSCKASGYTFSWYHLEWVRQAPGHGLEWMGEIDPGTFTTNYNEKFKARVTFTADTSTSTAYMELSSL
|
1609 |
+
RSEDTAVYYCARFSHFSGSNHDYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV
|
1610 |
+
HTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLYIT
|
1611 |
+
REPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKG
|
1612 |
+
QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV
|
1613 |
+
MHEALKFHYTOKSLSLSPGK
|
1614 |
+
|
1615 |
+
\>LIGHT CHAIN: Ligelizumab
|
1616 |
+
|
1617 |
+
EIVMTQSPATLSVSPGERATLSCRASOSIGTNIHWYQQKPGQAPRLLIYYASESISGIPARFSGSGSGTEFTLTISSLOSEDFAVYY
|
1618 |
+
COOSWSWPTTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYS
|
1619 |
+
LSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
|
1620 |
+
|
1621 |
+
|
1622 |
+
<figure>
|
1623 |
+
|
1624 |
+
RIC
|
1625 |
+
|
1626 |
+
</figure>
|
1627 |
+
|
1628 |
+
|
1629 |
+
<!-- PageFooter="biologics" -->
|
1630 |
+
|
1631 |
+
RED: relevant increase upon stressing
|
1632 |
+
|
1633 |
+
<!-- PageNumber="16" -->
|
1634 |
+
<!-- PageBreak -->
|
1635 |
+
|
1636 |
+
|
1637 |
+
<figure>
|
1638 |
+
</figure>
|
1639 |
+
|
1640 |
+
|
1641 |
+
## Results 18E2 HIS2 ABDEG - Identity
|
1642 |
+
|
1643 |
+
|
1644 |
+
<table>
|
1645 |
+
<tr>
|
1646 |
+
<th>RT</th>
|
1647 |
+
<th>Mass</th>
|
1648 |
+
<th>Sequence</th>
|
1649 |
+
<th>Seq Loc</th>
|
1650 |
+
<th>Tgt Seq Mass</th>
|
1651 |
+
<th>Diff (Bio, ppm)</th>
|
1652 |
+
<th>Pred Mods</th>
|
1653 |
+
</tr>
|
1654 |
+
<tr>
|
1655 |
+
<td>23.52</td>
|
1656 |
+
<td>1895.0106</td>
|
1657 |
+
<td>EVQLLESGGGLVQPGGSLR</td>
|
1658 |
+
<td>HC(001-019)</td>
|
1659 |
+
<td>1895.0113</td>
|
1660 |
+
<td>-0.33</td>
|
1661 |
+
<td></td>
|
1662 |
+
</tr>
|
1663 |
+
<tr>
|
1664 |
+
<td>29.08</td>
|
1665 |
+
<td>2205.0150</td>
|
1666 |
+
<td>LSCAASGFTFSSYVMHWVR</td>
|
1667 |
+
<td>HC(020-038)</td>
|
1668 |
+
<td>2205.0136</td>
|
1669 |
+
<td>0.67</td>
|
1670 |
+
<td></td>
|
1671 |
+
</tr>
|
1672 |
+
<tr>
|
1673 |
+
<td>31.91</td>
|
1674 |
+
<td>5241.4455</td>
|
1675 |
+
<td>LSCAASGFTFSSYVMHWVRQAPGKGLEWVSSIYHDGSHTYYADFVK</td>
|
1676 |
+
<td>HC(020-065)</td>
|
1677 |
+
<td>5241.4542</td>
|
1678 |
+
<td>-1.66</td>
|
1679 |
+
<td></td>
|
1680 |
+
</tr>
|
1681 |
+
<tr>
|
1682 |
+
<td>6.07</td>
|
1683 |
+
<td>499.2752</td>
|
1684 |
+
<td>QAPGK</td>
|
1685 |
+
<td>HC(039-043)</td>
|
1686 |
+
<td>499.2755</td>
|
1687 |
+
<td>-0.47</td>
|
1688 |
+
<td></td>
|
1689 |
+
</tr>
|
1690 |
+
<tr>
|
1691 |
+
<td>25.58</td>
|
1692 |
+
<td>2573.1878</td>
|
1693 |
+
<td>GLEWVSSIYHDGSHTYYADFVK</td>
|
1694 |
+
<td>HC(044-065)</td>
|
1695 |
+
<td>2573.1863</td>
|
1696 |
+
<td>0.56</td>
|
1697 |
+
<td></td>
|
1698 |
+
</tr>
|
1699 |
+
<tr>
|
1700 |
+
<td>15.94</td>
|
1701 |
+
<td>835.4666</td>
|
1702 |
+
<td>GRFTISR</td>
|
1703 |
+
<td>HC(066-072)</td>
|
1704 |
+
<td>835.4664</td>
|
1705 |
+
<td>0.2</td>
|
1706 |
+
<td></td>
|
1707 |
+
</tr>
|
1708 |
+
<tr>
|
1709 |
+
<td>16.06</td>
|
1710 |
+
<td>622.3440</td>
|
1711 |
+
<td>FTISR</td>
|
1712 |
+
<td>HC(068-072)</td>
|
1713 |
+
<td>622.3439</td>
|
1714 |
+
<td>0.21</td>
|
1715 |
+
<td></td>
|
1716 |
+
</tr>
|
1717 |
+
<tr>
|
1718 |
+
<td>2.31</td>
|
1719 |
+
<td>462.2077</td>
|
1720 |
+
<td>DNSK</td>
|
1721 |
+
<td>HC(073-076)</td>
|
1722 |
+
<td>462.2074</td>
|
1723 |
+
<td>0.47</td>
|
1724 |
+
<td></td>
|
1725 |
+
</tr>
|
1726 |
+
<tr>
|
1727 |
+
<td>22.53</td>
|
1728 |
+
<td>1351.6908</td>
|
1729 |
+
<td>NTLYLQMNSLR</td>
|
1730 |
+
<td>HC(077-087)</td>
|
1731 |
+
<td>1351.6918</td>
|
1732 |
+
<td>-0.78</td>
|
1733 |
+
<td></td>
|
1734 |
+
</tr>
|
1735 |
+
<tr>
|
1736 |
+
<td>15.52</td>
|
1737 |
+
<td>1289.5593</td>
|
1738 |
+
<td>AEDTAVYYCAK</td>
|
1739 |
+
<td>HC(088-098)</td>
|
1740 |
+
<td>1289.5598</td>
|
1741 |
+
<td>-0.41</td>
|
1742 |
+
<td></td>
|
1743 |
+
</tr>
|
1744 |
+
<tr>
|
1745 |
+
<td>28.16</td>
|
1746 |
+
<td>3400.5399</td>
|
1747 |
+
<td>GTSYSGSYYYTDPFFGSWGQGTLVTVSSASTK</td>
|
1748 |
+
<td>HC(099-130)</td>
|
1749 |
+
<td>3400.5412</td>
|
1750 |
+
<td>-0.39</td>
|
1751 |
+
<td></td>
|
1752 |
+
</tr>
|
1753 |
+
<tr>
|
1754 |
+
<td>22.49</td>
|
1755 |
+
<td>1185.6381</td>
|
1756 |
+
<td>GPSVFPLAPSSK</td>
|
1757 |
+
<td>HC(131-142)</td>
|
1758 |
+
<td>1185.6394</td>
|
1759 |
+
<td>-1.08</td>
|
1760 |
+
<td></td>
|
1761 |
+
</tr>
|
1762 |
+
<tr>
|
1763 |
+
<td>20.36</td>
|
1764 |
+
<td>1320.6693</td>
|
1765 |
+
<td>STSGGTAALGCLVK</td>
|
1766 |
+
<td>HC(143-156)</td>
|
1767 |
+
<td>1320.6708</td>
|
1768 |
+
<td>-1.13</td>
|
1769 |
+
<td></td>
|
1770 |
+
</tr>
|
1771 |
+
<tr>
|
1772 |
+
<td>31.67</td>
|
1773 |
+
<td>8014.9598</td>
|
1774 |
+
<td>STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK</td>
|
1775 |
+
<td>HC(143-219)</td>
|
1776 |
+
<td>8014.9674</td>
|
1777 |
+
<td>-0.95</td>
|
1778 |
+
<td></td>
|
1779 |
+
</tr>
|
1780 |
+
<tr>
|
1781 |
+
<td>30.97</td>
|
1782 |
+
<td>6712.2931</td>
|
1783 |
+
<td>DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK</td>
|
1784 |
+
<td>HC(157-219)</td>
|
1785 |
+
<td>6712.3072</td>
|
1786 |
+
<td>-2.1</td>
|
1787 |
+
<td></td>
|
1788 |
+
</tr>
|
1789 |
+
<tr>
|
1790 |
+
<td>3.07</td>
|
1791 |
+
<td>488.2955</td>
|
1792 |
+
<td>VDKK</td>
|
1793 |
+
<td>HC(220-223)</td>
|
1794 |
+
<td>488.2959</td>
|
1795 |
+
<td>-0.72</td>
|
1796 |
+
<td></td>
|
1797 |
+
</tr>
|
1798 |
+
<tr>
|
1799 |
+
<td>8.41</td>
|
1800 |
+
<td>599.3646</td>
|
1801 |
+
<td>KVEPK</td>
|
1802 |
+
<td>HC(223-227)</td>
|
1803 |
+
<td>599.3643</td>
|
1804 |
+
<td>0.52</td>
|
1805 |
+
<td></td>
|
1806 |
+
</tr>
|
1807 |
+
<tr>
|
1808 |
+
<td>7.89</td>
|
1809 |
+
<td>471.2689</td>
|
1810 |
+
<td>VEPK</td>
|
1811 |
+
<td>HC(224-227)</td>
|
1812 |
+
<td>471.2693</td>
|
1813 |
+
<td>-0.94</td>
|
1814 |
+
<td></td>
|
1815 |
+
</tr>
|
1816 |
+
<tr>
|
1817 |
+
<td>2.06</td>
|
1818 |
+
<td>508.1946</td>
|
1819 |
+
<td>SCDK</td>
|
1820 |
+
<td>HC(228-231)</td>
|
1821 |
+
<td>508.1952</td>
|
1822 |
+
<td>-1.19</td>
|
1823 |
+
<td></td>
|
1824 |
+
</tr>
|
1825 |
+
<tr>
|
1826 |
+
<td>27.38</td>
|
1827 |
+
<td>3333.6341</td>
|
1828 |
+
<td>SCDKTHTCPPCPAPELLGGPSVFLFPPKPK</td>
|
1829 |
+
<td>HC(228-257)</td>
|
1830 |
+
<td>3333.6349</td>
|
1831 |
+
<td>-0.22</td>
|
1832 |
+
<td></td>
|
1833 |
+
</tr>
|
1834 |
+
<tr>
|
1835 |
+
<td>28.10</td>
|
1836 |
+
<td>2843.4509</td>
|
1837 |
+
<td>THTCPPCPAPELLGGPSVFLFPPKPK</td>
|
1838 |
+
<td>HC(232-257)</td>
|
1839 |
+
<td>2843.4503</td>
|
1840 |
+
<td>0.21</td>
|
1841 |
+
<td></td>
|
1842 |
+
</tr>
|
1843 |
+
<tr>
|
1844 |
+
<td>17.76</td>
|
1845 |
+
<td>880.4659</td>
|
1846 |
+
<td>DTLYITR</td>
|
1847 |
+
<td>HC(258-264)</td>
|
1848 |
+
<td>880.4654</td>
|
1849 |
+
<td>0.54</td>
|
1850 |
+
<td></td>
|
1851 |
+
</tr>
|
1852 |
+
<tr>
|
1853 |
+
<td>22.02</td>
|
1854 |
+
<td>2166.0145</td>
|
1855 |
+
<td>EPEVTCVVVDVSHEDPEVK</td>
|
1856 |
+
<td>HC(265-283)</td>
|
1857 |
+
<td>2166.0151</td>
|
1858 |
+
<td>-0.25</td>
|
1859 |
+
<td></td>
|
1860 |
+
</tr>
|
1861 |
+
<tr>
|
1862 |
+
<td>22.34</td>
|
1863 |
+
<td>1676.7950</td>
|
1864 |
+
<td>FNWYVDGVEVHNAK</td>
|
1865 |
+
<td>HC(284-297)</td>
|
1866 |
+
<td>1676.7947</td>
|
1867 |
+
<td>0.16</td>
|
1868 |
+
<td></td>
|
1869 |
+
</tr>
|
1870 |
+
<tr>
|
1871 |
+
<td>4.63</td>
|
1872 |
+
<td>500.3070</td>
|
1873 |
+
<td>TKPR</td>
|
1874 |
+
<td>HC(298-301)</td>
|
1875 |
+
<td>500.3071</td>
|
1876 |
+
<td>-0.23</td>
|
1877 |
+
<td></td>
|
1878 |
+
</tr>
|
1879 |
+
<tr>
|
1880 |
+
<td>11.96</td>
|
1881 |
+
<td>1188.5050</td>
|
1882 |
+
<td>EEQYNSTYR</td>
|
1883 |
+
<td>HC(302-310)</td>
|
1884 |
+
<td>1188.5047</td>
|
1885 |
+
<td>0.24</td>
|
1886 |
+
<td></td>
|
1887 |
+
</tr>
|
1888 |
+
<tr>
|
1889 |
+
<td>11.18</td>
|
1890 |
+
<td>2633.0396</td>
|
1891 |
+
<td>EEQYNSTYR</td>
|
1892 |
+
<td>HC(302-310)</td>
|
1893 |
+
<td>2633.0386</td>
|
1894 |
+
<td>0.38</td>
|
1895 |
+
<td>G0F</td>
|
1896 |
+
</tr>
|
1897 |
+
<tr>
|
1898 |
+
<td>28.68</td>
|
1899 |
+
<td>1806.9994</td>
|
1900 |
+
<td>VVSVLTVLHQDWLNGK</td>
|
1901 |
+
<td>HC(311-326)</td>
|
1902 |
+
<td>1806.9992</td>
|
1903 |
+
<td>0.08</td>
|
1904 |
+
<td></td>
|
1905 |
+
</tr>
|
1906 |
+
<tr>
|
1907 |
+
<td>27.71</td>
|
1908 |
+
<td>2227.2001</td>
|
1909 |
+
<td>VVSVLTVLHQDWLNGKEYK</td>
|
1910 |
+
<td>HC(311-329)</td>
|
1911 |
+
<td>2227.2001</td>
|
1912 |
+
<td>0.01</td>
|
1913 |
+
<td></td>
|
1914 |
+
</tr>
|
1915 |
+
<tr>
|
1916 |
+
<td>6.58</td>
|
1917 |
+
<td>438.2110</td>
|
1918 |
+
<td>EYK</td>
|
1919 |
+
<td>HC(327-329)</td>
|
1920 |
+
<td>438.2115</td>
|
1921 |
+
<td>-0.95</td>
|
1922 |
+
<td></td>
|
1923 |
+
</tr>
|
1924 |
+
<tr>
|
1925 |
+
<td>1.97</td>
|
1926 |
+
<td>306.1361</td>
|
1927 |
+
<td>CK</td>
|
1928 |
+
<td>HC(330-331)</td>
|
1929 |
+
<td>306.1362</td>
|
1930 |
+
<td>-0.37</td>
|
1931 |
+
<td></td>
|
1932 |
+
</tr>
|
1933 |
+
<tr>
|
1934 |
+
<td>3.05</td>
|
1935 |
+
<td>446.2485</td>
|
1936 |
+
<td>VSNK</td>
|
1937 |
+
<td>HC(332-335)</td>
|
1938 |
+
<td>446.2489</td>
|
1939 |
+
<td>-0.91</td>
|
1940 |
+
<td></td>
|
1941 |
+
</tr>
|
1942 |
+
<tr>
|
1943 |
+
<td>18.00</td>
|
1944 |
+
<td>837.4964</td>
|
1945 |
+
<td>ALPAPIEK</td>
|
1946 |
+
<td>HC(336-343)</td>
|
1947 |
+
<td>837.4960</td>
|
1948 |
+
<td>0.51</td>
|
1949 |
+
<td></td>
|
1950 |
+
</tr>
|
1951 |
+
</table>
|
1952 |
+
|
1953 |
+
|
1954 |
+
<figure>
|
1955 |
+
</figure>
|
1956 |
+
|
1957 |
+
|
1958 |
+
RIC
|
1959 |
+
|
1960 |
+
<!-- PageFooter="biologics" -->
|
1961 |
+
<!-- PageNumber="17" -->
|
1962 |
+
<!-- PageBreak -->
|
1963 |
+
|
1964 |
+
|
1965 |
+
<figure>
|
1966 |
+
</figure>
|
1967 |
+
|
1968 |
+
|
1969 |
+
### Results 18E2 HIS2 ABDEG - Identity
|
1970 |
+
|
1971 |
+
|
1972 |
+
<table>
|
1973 |
+
<tr>
|
1974 |
+
<th>RT</th>
|
1975 |
+
<th>Mass</th>
|
1976 |
+
<th>Sequence</th>
|
1977 |
+
<th>Seq Loc</th>
|
1978 |
+
<th>Tgt Seq Mass</th>
|
1979 |
+
<th>Diff (Bio, ppm)</th>
|
1980 |
+
<th>Pred Mods</th>
|
1981 |
+
</tr>
|
1982 |
+
<tr>
|
1983 |
+
<td>8.04</td>
|
1984 |
+
<td>447.2689</td>
|
1985 |
+
<td>TISK</td>
|
1986 |
+
<td>HC(344-347)</td>
|
1987 |
+
<td>447.2693</td>
|
1988 |
+
<td>-0.89</td>
|
1989 |
+
<td></td>
|
1990 |
+
</tr>
|
1991 |
+
<tr>
|
1992 |
+
<td>6.37</td>
|
1993 |
+
<td>655.3762</td>
|
1994 |
+
<td>AKGQPR</td>
|
1995 |
+
<td>HC(348-353)</td>
|
1996 |
+
<td>655.3766</td>
|
1997 |
+
<td>-0.53</td>
|
1998 |
+
<td></td>
|
1999 |
+
</tr>
|
2000 |
+
<tr>
|
2001 |
+
<td>5.34</td>
|
2002 |
+
<td>456.2436</td>
|
2003 |
+
<td>GQPR</td>
|
2004 |
+
<td>HC(350-353)</td>
|
2005 |
+
<td>456.2445</td>
|
2006 |
+
<td>-2</td>
|
2007 |
+
<td></td>
|
2008 |
+
</tr>
|
2009 |
+
<tr>
|
2010 |
+
<td>18.62</td>
|
2011 |
+
<td>1285.6659</td>
|
2012 |
+
<td>EPQVYTLPPSR</td>
|
2013 |
+
<td>HC(354-364)</td>
|
2014 |
+
<td>1285.6667</td>
|
2015 |
+
<td>-0.59</td>
|
2016 |
+
<td></td>
|
2017 |
+
</tr>
|
2018 |
+
<tr>
|
2019 |
+
<td>19.70</td>
|
2020 |
+
<td>1871.9625</td>
|
2021 |
+
<td>EPQVYTLPPSRDELTK</td>
|
2022 |
+
<td>HC(354-369)</td>
|
2023 |
+
<td>1871.9629</td>
|
2024 |
+
<td>-0.2</td>
|
2025 |
+
<td></td>
|
2026 |
+
</tr>
|
2027 |
+
<tr>
|
2028 |
+
<td>10.35</td>
|
2029 |
+
<td>604.3067</td>
|
2030 |
+
<td>DELTK</td>
|
2031 |
+
<td>HC(365-369)</td>
|
2032 |
+
<td>604.3068</td>
|
2033 |
+
<td>-0.24</td>
|
2034 |
+
<td></td>
|
2035 |
+
</tr>
|
2036 |
+
<tr>
|
2037 |
+
<td>21.71</td>
|
2038 |
+
<td>1160.6228</td>
|
2039 |
+
<td>NQVSLTCLVK</td>
|
2040 |
+
<td>HC(370-379)</td>
|
2041 |
+
<td>1160.6224</td>
|
2042 |
+
<td>0.4</td>
|
2043 |
+
<td></td>
|
2044 |
+
</tr>
|
2045 |
+
<tr>
|
2046 |
+
<td>24.22</td>
|
2047 |
+
<td>2543.1244</td>
|
2048 |
+
<td>GFYPSDIAVEWESNGQPENNYK</td>
|
2049 |
+
<td>HC(380-401)</td>
|
2050 |
+
<td>2543.1241</td>
|
2051 |
+
<td>0.12</td>
|
2052 |
+
<td></td>
|
2053 |
+
</tr>
|
2054 |
+
<tr>
|
2055 |
+
<td>25.93</td>
|
2056 |
+
<td>1872.9139</td>
|
2057 |
+
<td>TTPPVLDSDGSFFLYSK</td>
|
2058 |
+
<td>HC(402-418)</td>
|
2059 |
+
<td>1872.9146</td>
|
2060 |
+
<td>-0.35</td>
|
2061 |
+
<td></td>
|
2062 |
+
</tr>
|
2063 |
+
<tr>
|
2064 |
+
<td>12.41</td>
|
2065 |
+
<td>574.3327</td>
|
2066 |
+
<td>LTVDK</td>
|
2067 |
+
<td>HC(419-423)</td>
|
2068 |
+
<td>574.3326</td>
|
2069 |
+
<td>0.12</td>
|
2070 |
+
<td></td>
|
2071 |
+
</tr>
|
2072 |
+
<tr>
|
2073 |
+
<td>1.97</td>
|
2074 |
+
<td>261.1431</td>
|
2075 |
+
<td>SR</td>
|
2076 |
+
<td>HC(424-425)</td>
|
2077 |
+
<td>261.1437</td>
|
2078 |
+
<td>-2.18</td>
|
2079 |
+
<td></td>
|
2080 |
+
</tr>
|
2081 |
+
<tr>
|
2082 |
+
<td>33.08</td>
|
2083 |
+
<td>2263.0592</td>
|
2084 |
+
<td>SRWQQGNVFSCSVMHEALK</td>
|
2085 |
+
<td>HC(424-442)</td>
|
2086 |
+
<td>2263.0627</td>
|
2087 |
+
<td>-1.54</td>
|
2088 |
+
<td></td>
|
2089 |
+
</tr>
|
2090 |
+
<tr>
|
2091 |
+
<td>23.63</td>
|
2092 |
+
<td>3067.4465</td>
|
2093 |
+
<td>SRWQQGNVFSCSVMHEALKFHYTQK</td>
|
2094 |
+
<td>HC(424-448)</td>
|
2095 |
+
<td>3067.4545</td>
|
2096 |
+
<td>-2.63</td>
|
2097 |
+
<td></td>
|
2098 |
+
</tr>
|
2099 |
+
<tr>
|
2100 |
+
<td>23.22</td>
|
2101 |
+
<td>2019.9271</td>
|
2102 |
+
<td>WQQGNVFSCSVMHEALK</td>
|
2103 |
+
<td>HC(426-442)</td>
|
2104 |
+
<td>2019.9295</td>
|
2105 |
+
<td>-1.18</td>
|
2106 |
+
<td></td>
|
2107 |
+
</tr>
|
2108 |
+
<tr>
|
2109 |
+
<td>12.52</td>
|
2110 |
+
<td>822.4028</td>
|
2111 |
+
<td>FHYTQK</td>
|
2112 |
+
<td>HC(443-448)</td>
|
2113 |
+
<td>822.4024</td>
|
2114 |
+
<td>0.43</td>
|
2115 |
+
<td></td>
|
2116 |
+
</tr>
|
2117 |
+
<tr>
|
2118 |
+
<td>18.20</td>
|
2119 |
+
<td>659.3486</td>
|
2120 |
+
<td>SLSLSPG</td>
|
2121 |
+
<td>HC(449-455)</td>
|
2122 |
+
<td>659.3490</td>
|
2123 |
+
<td>-0.58</td>
|
2124 |
+
<td></td>
|
2125 |
+
</tr>
|
2126 |
+
<tr>
|
2127 |
+
<td>22.64</td>
|
2128 |
+
<td>1957.0099</td>
|
2129 |
+
<td>SSELTQDPAVSVALGQTVR</td>
|
2130 |
+
<td>LC(001-019)</td>
|
2131 |
+
<td>1957.0116</td>
|
2132 |
+
<td>-0.91</td>
|
2133 |
+
<td></td>
|
2134 |
+
</tr>
|
2135 |
+
<tr>
|
2136 |
+
<td>8.99</td>
|
2137 |
+
<td>848.3799</td>
|
2138 |
+
<td>ITCQGDR</td>
|
2139 |
+
<td>LC(020-026)</td>
|
2140 |
+
<td>848.3811</td>
|
2141 |
+
<td>-1.4</td>
|
2142 |
+
<td></td>
|
2143 |
+
</tr>
|
2144 |
+
<tr>
|
2145 |
+
<td>8.03</td>
|
2146 |
+
<td>431.2486</td>
|
2147 |
+
<td>LGSR</td>
|
2148 |
+
<td>LC(027-030)</td>
|
2149 |
+
<td>431.2492</td>
|
2150 |
+
<td>-1.39</td>
|
2151 |
+
<td></td>
|
2152 |
+
</tr>
|
2153 |
+
<tr>
|
2154 |
+
<td>24.57</td>
|
2155 |
+
<td>2703.3443</td>
|
2156 |
+
<td>YIHWYQQKPGQAPVLVIYDDDR</td>
|
2157 |
+
<td>LC(031-052)</td>
|
2158 |
+
<td>2703.3445</td>
|
2159 |
+
<td>-0.08</td>
|
2160 |
+
<td></td>
|
2161 |
+
</tr>
|
2162 |
+
<tr>
|
2163 |
+
<td>23.74</td>
|
2164 |
+
<td>3581.8172</td>
|
2165 |
+
<td>YIHWYQQKPGQAPVLVIYDDDRRPSGIPDR</td>
|
2166 |
+
<td>LC(031-060)</td>
|
2167 |
+
<td>3581.8168</td>
|
2168 |
+
<td>0.13</td>
|
2169 |
+
<td></td>
|
2170 |
+
</tr>
|
2171 |
+
<tr>
|
2172 |
+
<td>13.04</td>
|
2173 |
+
<td>896.4826</td>
|
2174 |
+
<td>RPSGIPDR</td>
|
2175 |
+
<td>LC(053-060)</td>
|
2176 |
+
<td>896.4828</td>
|
2177 |
+
<td>-0.25</td>
|
2178 |
+
<td></td>
|
2179 |
+
</tr>
|
2180 |
+
<tr>
|
2181 |
+
<td>25.10</td>
|
2182 |
+
<td>5127.3123</td>
|
2183 |
+
<td>FSGSSSGNTASLTITGAQAEDEADYYCQSADSSGNPVFGGGTQLTVLGQPK</td>
|
2184 |
+
<td>LC(061-111)</td>
|
2185 |
+
<td>5127.3164</td>
|
2186 |
+
<td>-0.8</td>
|
2187 |
+
<td></td>
|
2188 |
+
</tr>
|
2189 |
+
<tr>
|
2190 |
+
<td>23.58</td>
|
2191 |
+
<td>1985.0103</td>
|
2192 |
+
<td>AAPSVTLFPPSSEELQANK</td>
|
2193 |
+
<td>LC(112-130)</td>
|
2194 |
+
<td>1985.0106</td>
|
2195 |
+
<td>-0.13</td>
|
2196 |
+
<td></td>
|
2197 |
+
</tr>
|
2198 |
+
<tr>
|
2199 |
+
<td>34.71</td>
|
2200 |
+
<td>4177.1390</td>
|
2201 |
+
<td>AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWK</td>
|
2202 |
+
<td>LC(112-150)</td>
|
2203 |
+
<td>4177.1446</td>
|
2204 |
+
<td>-1.33</td>
|
2205 |
+
<td></td>
|
2206 |
+
</tr>
|
2207 |
+
<tr>
|
2208 |
+
<td>33.08</td>
|
2209 |
+
<td>2210.1419</td>
|
2210 |
+
<td>ATLVCLISDFYPGAVTVAWK</td>
|
2211 |
+
<td>LC(131-150)</td>
|
2212 |
+
<td>2210.1446</td>
|
2213 |
+
<td>-1.2</td>
|
2214 |
+
<td></td>
|
2215 |
+
</tr>
|
2216 |
+
<tr>
|
2217 |
+
<td>10.21</td>
|
2218 |
+
<td>702.3549</td>
|
2219 |
+
<td>ADSSPVK</td>
|
2220 |
+
<td>LC(151-157)</td>
|
2221 |
+
<td>702.3548</td>
|
2222 |
+
<td>0.14</td>
|
2223 |
+
<td></td>
|
2224 |
+
</tr>
|
2225 |
+
<tr>
|
2226 |
+
<td>11.55</td>
|
2227 |
+
<td>989.5031</td>
|
2228 |
+
<td>AGVETTTPSK</td>
|
2229 |
+
<td>LC(158-167)</td>
|
2230 |
+
<td>989.5029</td>
|
2231 |
+
<td>0.15</td>
|
2232 |
+
<td></td>
|
2233 |
+
</tr>
|
2234 |
+
<tr>
|
2235 |
+
<td>1.96</td>
|
2236 |
+
<td>589.2819</td>
|
2237 |
+
<td>QSNNK</td>
|
2238 |
+
<td>LC(168-172)</td>
|
2239 |
+
<td>589.2820</td>
|
2240 |
+
<td>-0.15</td>
|
2241 |
+
<td></td>
|
2242 |
+
</tr>
|
2243 |
+
<tr>
|
2244 |
+
<td>24.34</td>
|
2245 |
+
<td>1742.8513</td>
|
2246 |
+
<td>YAASSYLSLTPEQWK</td>
|
2247 |
+
<td>LC(173-187)</td>
|
2248 |
+
<td>1742.8516</td>
|
2249 |
+
<td>-0.14</td>
|
2250 |
+
<td></td>
|
2251 |
+
</tr>
|
2252 |
+
<tr>
|
2253 |
+
<td>2.10</td>
|
2254 |
+
<td>398.2021</td>
|
2255 |
+
<td>SHR</td>
|
2256 |
+
<td>LC(188-190)</td>
|
2257 |
+
<td>398.2026</td>
|
2258 |
+
<td>-1.29</td>
|
2259 |
+
<td></td>
|
2260 |
+
</tr>
|
2261 |
+
<tr>
|
2262 |
+
<td>13.38</td>
|
2263 |
+
<td>1710.7519</td>
|
2264 |
+
<td>SYSCQVTHEGSTVEK</td>
|
2265 |
+
<td>LC(191-205)</td>
|
2266 |
+
<td>1710.7519</td>
|
2267 |
+
<td>-0.03</td>
|
2268 |
+
<td></td>
|
2269 |
+
</tr>
|
2270 |
+
<tr>
|
2271 |
+
<td>11.73</td>
|
2272 |
+
<td>863.3695</td>
|
2273 |
+
<td>TVAPTECS</td>
|
2274 |
+
<td>LC(206-213)</td>
|
2275 |
+
<td>863.3695</td>
|
2276 |
+
<td>0.06</td>
|
2277 |
+
<td></td>
|
2278 |
+
</tr>
|
2279 |
+
</table>
|
2280 |
+
|
2281 |
+
|
2282 |
+
<figure>
|
2283 |
+
|
2284 |
+
RIC
|
2285 |
+
|
2286 |
+
<!-- PageFooter="biologics" -->
|
2287 |
+
|
2288 |
+
</figure>
|
2289 |
+
|
2290 |
+
|
2291 |
+
<!-- PageNumber="18" -->
|
2292 |
+
<!-- PageBreak -->
|
2293 |
+
|
2294 |
+
|
2295 |
+
<figure>
|
2296 |
+
</figure>
|
2297 |
+
|
2298 |
+
|
2299 |
+
## Results 18E2 HIS2 ABDEG - Identity
|
2300 |
+
|
2301 |
+
|
2302 |
+
### >HEAVY CHAIN: 18E2HIS2
|
2303 |
+
|
2304 |
+
EVOLLESGGGLVQPGGSLRLSCAASGFTFSSYVMHWVRQAPGKGLEWVSSIYHDGSHTYYADFVKGRFTISRDNSKNTLYLQ
|
2305 |
+
MNSLRAEDTAVYYCAKGTSYSGSYYYTDPFFGSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT
|
2306 |
+
VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGG
|
2307 |
+
PSVFLFPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY
|
2308 |
+
KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD
|
2309 |
+
GSFFLYSKLTVDKSRWQQGNVFSCSVMHEALKFHYTOKSLSLSPGK
|
2310 |
+
|
2311 |
+
|
2312 |
+
### >LIGHT CHAIN : 18E2HIS2
|
2313 |
+
|
2314 |
+
SSELTQDPAVSVALGQTVRITCQGDRLGSRYIHWYQQKPGQAPVLVIYDDDRRPSGIPDRFSGSSSGNTASLTITGAQAEDE
|
2315 |
+
ADYYCOSADSSGNPVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT
|
2316 |
+
PSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
|
2317 |
+
|
2318 |
+
Sequence coverage of 99.8%
|
2319 |
+
|
2320 |
+
|
2321 |
+
<figure>
|
2322 |
+
|
2323 |
+
RIC
|
2324 |
+
|
2325 |
+
</figure>
|
2326 |
+
|
2327 |
+
|
2328 |
+
<!-- PageFooter="biologics" -->
|
2329 |
+
<!-- PageNumber="19" -->
|
2330 |
+
<!-- PageBreak -->
|
2331 |
+
|
2332 |
+
|
2333 |
+
<figure>
|
2334 |
+
</figure>
|
2335 |
+
|
2336 |
+
|
2337 |
+
## Results 18E2 HIS2 ABDEG - Modifications (oxidation)
|
2338 |
+
|
2339 |
+
|
2340 |
+
<table>
|
2341 |
+
<tr>
|
2342 |
+
<th>Sequence</th>
|
2343 |
+
<th>Seq Loc</th>
|
2344 |
+
<th>Modification</th>
|
2345 |
+
<th>18E2 HIS2 ABDEG</th>
|
2346 |
+
<th>18E2 HIS2 ABDEG T6w</th>
|
2347 |
+
</tr>
|
2348 |
+
<tr>
|
2349 |
+
<td rowspan="2">WQQGNVFSCSVMHEALK</td>
|
2350 |
+
<td rowspan="2">HC(426-442)</td>
|
2351 |
+
<td rowspan="2">Oxidation</td>
|
2352 |
+
<td>3.7</td>
|
2353 |
+
<td rowspan="2">18.2 81.8</td>
|
2354 |
+
</tr>
|
2355 |
+
<tr>
|
2356 |
+
<td>96.3</td>
|
2357 |
+
</tr>
|
2358 |
+
</table>
|
2359 |
+
|
2360 |
+
BOLD: relevant increase upon stressing
|
2361 |
+
Note: Only modifications > 0.5% are reported
|
2362 |
+
|
2363 |
+
|
2364 |
+
<figure>
|
2365 |
+
|
2366 |
+
RIC
|
2367 |
+
|
2368 |
+
</figure>
|
2369 |
+
|
2370 |
+
|
2371 |
+
<!-- PageFooter="biologics" -->
|
2372 |
+
<!-- PageNumber="20" -->
|
2373 |
+
<!-- PageBreak -->
|
2374 |
+
|
2375 |
+
|
2376 |
+
<figure>
|
2377 |
+
</figure>
|
2378 |
+
|
2379 |
+
|
2380 |
+
## Results 18E2 HIS2 ABDEG - Modifications (deam/isoD)
|
2381 |
+
|
2382 |
+
|
2383 |
+
<table>
|
2384 |
+
<tr>
|
2385 |
+
<th>Sequence</th>
|
2386 |
+
<th>Seq Loc</th>
|
2387 |
+
<th>Modification</th>
|
2388 |
+
<th>18E2 HIS2 ABDEG</th>
|
2389 |
+
<th>18E2 HIS2 ABDEG T6w</th>
|
2390 |
+
</tr>
|
2391 |
+
<tr>
|
2392 |
+
<td rowspan="2">EVQLLESGGGLVQPGGSLR</td>
|
2393 |
+
<td rowspan="2">HC(1-19)</td>
|
2394 |
+
<td>Deamidation</td>
|
2395 |
+
<td>2.5</td>
|
2396 |
+
<td>2.0</td>
|
2397 |
+
</tr>
|
2398 |
+
<tr>
|
2399 |
+
<td></td>
|
2400 |
+
<td>97.5</td>
|
2401 |
+
<td>98.0</td>
|
2402 |
+
</tr>
|
2403 |
+
<tr>
|
2404 |
+
<td rowspan="2">NTLYLQMNSLR</td>
|
2405 |
+
<td rowspan="2">HC(77-87)</td>
|
2406 |
+
<td rowspan="2">Deamidation</td>
|
2407 |
+
<td>1.5</td>
|
2408 |
+
<td>2.2</td>
|
2409 |
+
</tr>
|
2410 |
+
<tr>
|
2411 |
+
<td>98.5</td>
|
2412 |
+
<td>97.8</td>
|
2413 |
+
</tr>
|
2414 |
+
<tr>
|
2415 |
+
<td rowspan="2">FNWYVDGVEVHNAK</td>
|
2416 |
+
<td rowspan="2">HC(284-297)</td>
|
2417 |
+
<td>IsoD</td>
|
2418 |
+
<td>0.8</td>
|
2419 |
+
<td>1.7</td>
|
2420 |
+
</tr>
|
2421 |
+
<tr>
|
2422 |
+
<td></td>
|
2423 |
+
<td>99.2</td>
|
2424 |
+
<td>98.3</td>
|
2425 |
+
</tr>
|
2426 |
+
<tr>
|
2427 |
+
<td rowspan="3">VVSVLTVLHQDWLNGK</td>
|
2428 |
+
<td rowspan="3">HC(311-326)</td>
|
2429 |
+
<td>Deamidation</td>
|
2430 |
+
<td>0.9</td>
|
2431 |
+
<td>1.5</td>
|
2432 |
+
</tr>
|
2433 |
+
<tr>
|
2434 |
+
<td></td>
|
2435 |
+
<td>97.1</td>
|
2436 |
+
<td>96.2</td>
|
2437 |
+
</tr>
|
2438 |
+
<tr>
|
2439 |
+
<td>Succinimide</td>
|
2440 |
+
<td>2.0</td>
|
2441 |
+
<td>2.3</td>
|
2442 |
+
</tr>
|
2443 |
+
<tr>
|
2444 |
+
<td rowspan="2">NQVSLTCLVK</td>
|
2445 |
+
<td rowspan="2">HC(370-379)</td>
|
2446 |
+
<td>Deamidation</td>
|
2447 |
+
<td>4.0</td>
|
2448 |
+
<td>4.9</td>
|
2449 |
+
</tr>
|
2450 |
+
<tr>
|
2451 |
+
<td></td>
|
2452 |
+
<td>96.0</td>
|
2453 |
+
<td>95.1</td>
|
2454 |
+
</tr>
|
2455 |
+
<tr>
|
2456 |
+
<td rowspan="2">GFYPSDIAVEWESNGQPENNYK</td>
|
2457 |
+
<td rowspan="2">HC(380-401)</td>
|
2458 |
+
<td>Deamidation</td>
|
2459 |
+
<td>6.1</td>
|
2460 |
+
<td>24.5</td>
|
2461 |
+
</tr>
|
2462 |
+
<tr>
|
2463 |
+
<td></td>
|
2464 |
+
<td>93.9</td>
|
2465 |
+
<td>75.5</td>
|
2466 |
+
</tr>
|
2467 |
+
<tr>
|
2468 |
+
<td>TTPPVLDSDGSFFLYSK</td>
|
2469 |
+
<td>HC(402-418)</td>
|
2470 |
+
<td>IsoD</td>
|
2471 |
+
<td>0.7 99.3</td>
|
2472 |
+
<td>1.6 98.4</td>
|
2473 |
+
</tr>
|
2474 |
+
</table>
|
2475 |
+
|
2476 |
+
BOLD: relevant increase upon stressing
|
2477 |
+
|
2478 |
+
Note: Only modifications > 0.5% are reported
|
2479 |
+
|
2480 |
+
|
2481 |
+
<figure>
|
2482 |
+
</figure>
|
2483 |
+
|
2484 |
+
|
2485 |
+
RIC
|
2486 |
+
biologics
|
2487 |
+
|
2488 |
+
<!-- PageNumber="21" -->
|
2489 |
+
<!-- PageBreak -->
|
2490 |
+
|
2491 |
+
|
2492 |
+
<figure>
|
2493 |
+
</figure>
|
2494 |
+
|
2495 |
+
|
2496 |
+
### Results 18E2 HIS2 ABDEG - Modifications (pyroE)
|
2497 |
+
|
2498 |
+
|
2499 |
+
<table>
|
2500 |
+
<tr>
|
2501 |
+
<th>Sequence</th>
|
2502 |
+
<th>Seq Loc</th>
|
2503 |
+
<th>Modification</th>
|
2504 |
+
<th>18E2 HIS2 ABDEG</th>
|
2505 |
+
<th>18E2 HIS2 ABDEG T6w</th>
|
2506 |
+
</tr>
|
2507 |
+
<tr>
|
2508 |
+
<td>EVQLLESGGGLVQPGGSLR</td>
|
2509 |
+
<td>HC(1-19)</td>
|
2510 |
+
<td>PyroE</td>
|
2511 |
+
<td>2.2 97.8</td>
|
2512 |
+
<td>11.1 89.0</td>
|
2513 |
+
</tr>
|
2514 |
+
</table>
|
2515 |
+
|
2516 |
+
|
2517 |
+
<figure>
|
2518 |
+
|
2519 |
+
RIC
|
2520 |
+
|
2521 |
+
</figure>
|
2522 |
+
|
2523 |
+
|
2524 |
+
<!-- PageFooter="biologics" -->
|
2525 |
+
<!-- PageNumber="22" -->
|
2526 |
+
<!-- PageBreak -->
|
2527 |
+
|
2528 |
+
|
2529 |
+
<figure>
|
2530 |
+
</figure>
|
2531 |
+
|
2532 |
+
|
2533 |
+
## Results 18E2 HIS2 ABDEG - Modifications
|
2534 |
+
|
2535 |
+
|
2536 |
+
### >HEAVY CHAIN : 18E2HIS2
|
2537 |
+
|
2538 |
+
EVOLLESGGGLVQPGGSLRLSCAASGFTFSSYVMHWVRQAPGKGLEWVSSIYHDGSHTYYADFVKGRFTISRDNSKNTLYLQ
|
2539 |
+
MNSLRAEDTAVYYCAKGTSYSGSYYYTDPFFGSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT
|
2540 |
+
VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGG
|
2541 |
+
PSVFLFPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY
|
2542 |
+
KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD
|
2543 |
+
GSFFLYSKLTVDKSRWQQGNVFSCSVMHEALKFHYTQKSLSLSPGK
|
2544 |
+
|
2545 |
+
|
2546 |
+
### >LIGHT CHAIN : 18E2HIS2
|
2547 |
+
|
2548 |
+
SSELTQDPAVSVALGQTVRITCQGDRLGSRYIHWYQQKPGQAPVLVIYDDDRRPSGIPDRFSGSSSGNTASLTITGAQAEDE
|
2549 |
+
ADYYCOSADSSGNPVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT
|
2550 |
+
PSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
|
2551 |
+
|
2552 |
+
|
2553 |
+
<figure>
|
2554 |
+
|
2555 |
+
RIC
|
2556 |
+
|
2557 |
+
</figure>
|
2558 |
+
|
2559 |
+
|
2560 |
+
<!-- PageFooter="biologics" -->
|
2561 |
+
<!-- PageFooter="RED: relevant increase upon stressing" -->
|
2562 |
+
<!-- PageNumber="23" -->
|
2563 |
+
<!-- PageBreak -->
|
2564 |
+
|
2565 |
+
|
2566 |
+
<figure>
|
2567 |
+
</figure>
|
2568 |
+
|
2569 |
+
|
2570 |
+
## Results 18E2VL HIS LALA ABDEG - Identity
|
2571 |
+
|
2572 |
+
|
2573 |
+
<table>
|
2574 |
+
<tr>
|
2575 |
+
<th>RT</th>
|
2576 |
+
<th>Mass</th>
|
2577 |
+
<th>Sequence</th>
|
2578 |
+
<th>Seq Loc</th>
|
2579 |
+
<th>Tgt Seq Mass</th>
|
2580 |
+
<th>Diff (Bio, ppm)</th>
|
2581 |
+
<th>Pred Mods</th>
|
2582 |
+
</tr>
|
2583 |
+
<tr>
|
2584 |
+
<td>23.53</td>
|
2585 |
+
<td>1895.0099</td>
|
2586 |
+
<td>EVQLLESGGGLVQPGGSLR</td>
|
2587 |
+
<td>HC(001-019)</td>
|
2588 |
+
<td>1895.0113</td>
|
2589 |
+
<td>-0.71</td>
|
2590 |
+
<td></td>
|
2591 |
+
</tr>
|
2592 |
+
<tr>
|
2593 |
+
<td>30.89</td>
|
2594 |
+
<td>2154.9844</td>
|
2595 |
+
<td>LSCAASGFTFSSYVMSWVR</td>
|
2596 |
+
<td>HC(020-038)</td>
|
2597 |
+
<td>2154.9867</td>
|
2598 |
+
<td>-1.06</td>
|
2599 |
+
<td></td>
|
2600 |
+
</tr>
|
2601 |
+
<tr>
|
2602 |
+
<td>33.75</td>
|
2603 |
+
<td>5191.4234</td>
|
2604 |
+
<td>LSCAASGFTFSSYVMSWVRQAPGKGLEWVSSIYHDGSHTYYADFVK</td>
|
2605 |
+
<td>HC(020-065)</td>
|
2606 |
+
<td>5191.4273</td>
|
2607 |
+
<td>-0.77</td>
|
2608 |
+
<td></td>
|
2609 |
+
</tr>
|
2610 |
+
<tr>
|
2611 |
+
<td>6.08</td>
|
2612 |
+
<td>499.2755</td>
|
2613 |
+
<td>QAPGK</td>
|
2614 |
+
<td>HC(039-043)</td>
|
2615 |
+
<td>499.2755</td>
|
2616 |
+
<td>0.01</td>
|
2617 |
+
<td></td>
|
2618 |
+
</tr>
|
2619 |
+
<tr>
|
2620 |
+
<td>25.60</td>
|
2621 |
+
<td>2573.1851</td>
|
2622 |
+
<td>GLEWVSSIYHDGSHTYYADFVK</td>
|
2623 |
+
<td>HC(044-065)</td>
|
2624 |
+
<td>2573.1863</td>
|
2625 |
+
<td>-0.48</td>
|
2626 |
+
<td></td>
|
2627 |
+
</tr>
|
2628 |
+
<tr>
|
2629 |
+
<td>25.93</td>
|
2630 |
+
<td>3390.6398</td>
|
2631 |
+
<td>GLEWVSSIYHDGSHTYYADFVKGRFTISR</td>
|
2632 |
+
<td>HC(044-072)</td>
|
2633 |
+
<td>3390.6422</td>
|
2634 |
+
<td>-0.72</td>
|
2635 |
+
<td></td>
|
2636 |
+
</tr>
|
2637 |
+
<tr>
|
2638 |
+
<td>1.98</td>
|
2639 |
+
<td>231.1327</td>
|
2640 |
+
<td>GR</td>
|
2641 |
+
<td>HC(066-067)</td>
|
2642 |
+
<td>231.1331</td>
|
2643 |
+
<td>-1.81</td>
|
2644 |
+
<td></td>
|
2645 |
+
</tr>
|
2646 |
+
<tr>
|
2647 |
+
<td>15.94</td>
|
2648 |
+
<td>835.4666</td>
|
2649 |
+
<td>GRFTISR</td>
|
2650 |
+
<td>HC(066-072)</td>
|
2651 |
+
<td>835.4664</td>
|
2652 |
+
<td>0.19</td>
|
2653 |
+
<td></td>
|
2654 |
+
</tr>
|
2655 |
+
<tr>
|
2656 |
+
<td>16.06</td>
|
2657 |
+
<td>622.3441</td>
|
2658 |
+
<td>FTISR</td>
|
2659 |
+
<td>HC(068-072)</td>
|
2660 |
+
<td>622.3439</td>
|
2661 |
+
<td>0.33</td>
|
2662 |
+
<td></td>
|
2663 |
+
</tr>
|
2664 |
+
<tr>
|
2665 |
+
<td>22.54</td>
|
2666 |
+
<td>1351.6916</td>
|
2667 |
+
<td>NTLYLQMNSLR</td>
|
2668 |
+
<td>HC(077-087)</td>
|
2669 |
+
<td>1351.6918</td>
|
2670 |
+
<td>-0.13</td>
|
2671 |
+
<td></td>
|
2672 |
+
</tr>
|
2673 |
+
<tr>
|
2674 |
+
<td>15.52</td>
|
2675 |
+
<td>1289.5586</td>
|
2676 |
+
<td>AEDTAVYYCAK</td>
|
2677 |
+
<td>HC(088-098)</td>
|
2678 |
+
<td>1289.5598</td>
|
2679 |
+
<td>-0.93</td>
|
2680 |
+
<td></td>
|
2681 |
+
</tr>
|
2682 |
+
<tr>
|
2683 |
+
<td>28.17</td>
|
2684 |
+
<td>3400.5377</td>
|
2685 |
+
<td>GTSYSGSYYYTDPFFGSWGQGTLVTVSSASTK</td>
|
2686 |
+
<td>HC(099-130)</td>
|
2687 |
+
<td>3400.5412</td>
|
2688 |
+
<td>-1.03</td>
|
2689 |
+
<td></td>
|
2690 |
+
</tr>
|
2691 |
+
<tr>
|
2692 |
+
<td>22.50</td>
|
2693 |
+
<td>1185.6390</td>
|
2694 |
+
<td>GPSVFPLAPSSK</td>
|
2695 |
+
<td>HC(131-142)</td>
|
2696 |
+
<td>1185.6394</td>
|
2697 |
+
<td>-0.35</td>
|
2698 |
+
<td></td>
|
2699 |
+
</tr>
|
2700 |
+
<tr>
|
2701 |
+
<td>20.37</td>
|
2702 |
+
<td>1320.6709</td>
|
2703 |
+
<td>STSGGTAALGCLVK</td>
|
2704 |
+
<td>HC(143-156)</td>
|
2705 |
+
<td>1320.6708</td>
|
2706 |
+
<td>0.11</td>
|
2707 |
+
<td></td>
|
2708 |
+
</tr>
|
2709 |
+
<tr>
|
2710 |
+
<td>31.67</td>
|
2711 |
+
<td>8014.9558</td>
|
2712 |
+
<td>STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK</td>
|
2713 |
+
<td>HC(143-219)</td>
|
2714 |
+
<td>8014.9674</td>
|
2715 |
+
<td>-1.44</td>
|
2716 |
+
<td></td>
|
2717 |
+
</tr>
|
2718 |
+
<tr>
|
2719 |
+
<td>30.98</td>
|
2720 |
+
<td>6712.2902</td>
|
2721 |
+
<td>DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK</td>
|
2722 |
+
<td>HC(157-219)</td>
|
2723 |
+
<td>6712.3072</td>
|
2724 |
+
<td>-2.53</td>
|
2725 |
+
<td></td>
|
2726 |
+
</tr>
|
2727 |
+
<tr>
|
2728 |
+
<td>3.78</td>
|
2729 |
+
<td>360.2002</td>
|
2730 |
+
<td>VDK</td>
|
2731 |
+
<td>HC(220-222)</td>
|
2732 |
+
<td>360.2009</td>
|
2733 |
+
<td>-1.91</td>
|
2734 |
+
<td></td>
|
2735 |
+
</tr>
|
2736 |
+
<tr>
|
2737 |
+
<td>3.06</td>
|
2738 |
+
<td>488.2956</td>
|
2739 |
+
<td>VDKK</td>
|
2740 |
+
<td>HC(220-223)</td>
|
2741 |
+
<td>488.2959</td>
|
2742 |
+
<td>-0.57</td>
|
2743 |
+
<td></td>
|
2744 |
+
</tr>
|
2745 |
+
<tr>
|
2746 |
+
<td>8.41</td>
|
2747 |
+
<td>599.3647</td>
|
2748 |
+
<td>KVEPK</td>
|
2749 |
+
<td>HC(223-227)</td>
|
2750 |
+
<td>599.3643</td>
|
2751 |
+
<td>0.73</td>
|
2752 |
+
<td></td>
|
2753 |
+
</tr>
|
2754 |
+
<tr>
|
2755 |
+
<td>7.89</td>
|
2756 |
+
<td>471.2691</td>
|
2757 |
+
<td>VEPK</td>
|
2758 |
+
<td>HC(224-227)</td>
|
2759 |
+
<td>471.2693</td>
|
2760 |
+
<td>-0.5</td>
|
2761 |
+
<td></td>
|
2762 |
+
</tr>
|
2763 |
+
<tr>
|
2764 |
+
<td>2.06</td>
|
2765 |
+
<td>508.1944</td>
|
2766 |
+
<td>SCDK</td>
|
2767 |
+
<td>HC(228-231)</td>
|
2768 |
+
<td>508.1952</td>
|
2769 |
+
<td>-1.57</td>
|
2770 |
+
<td></td>
|
2771 |
+
</tr>
|
2772 |
+
<tr>
|
2773 |
+
<td>22.03</td>
|
2774 |
+
<td>3249.5197</td>
|
2775 |
+
<td>SCDKTHTCPPCPAPEAAGGPSVFLFPPKPK</td>
|
2776 |
+
<td>HC(228-257)</td>
|
2777 |
+
<td>3249.5410</td>
|
2778 |
+
<td>-6.55</td>
|
2779 |
+
<td></td>
|
2780 |
+
</tr>
|
2781 |
+
<tr>
|
2782 |
+
<td>24.58</td>
|
2783 |
+
<td>2759.3550</td>
|
2784 |
+
<td>THTCPPCPAPEAAGGPSVFLFPPKPK</td>
|
2785 |
+
<td>HC(232-257)</td>
|
2786 |
+
<td>2759.3564</td>
|
2787 |
+
<td>-0.5</td>
|
2788 |
+
<td></td>
|
2789 |
+
</tr>
|
2790 |
+
<tr>
|
2791 |
+
<td>17.75</td>
|
2792 |
+
<td>880.4653</td>
|
2793 |
+
<td>DTLYITR</td>
|
2794 |
+
<td>HC(258-264)</td>
|
2795 |
+
<td>880.4654</td>
|
2796 |
+
<td>-0.18</td>
|
2797 |
+
<td></td>
|
2798 |
+
</tr>
|
2799 |
+
<tr>
|
2800 |
+
<td>22.03</td>
|
2801 |
+
<td>2166.0157</td>
|
2802 |
+
<td>EPEVTCVVVDVSHEDPEVK</td>
|
2803 |
+
<td>HC(265-283)</td>
|
2804 |
+
<td>2166.0151</td>
|
2805 |
+
<td>0.29</td>
|
2806 |
+
<td></td>
|
2807 |
+
</tr>
|
2808 |
+
<tr>
|
2809 |
+
<td>22.35</td>
|
2810 |
+
<td>1676.7944</td>
|
2811 |
+
<td>FNWYVDGVEVHNAK</td>
|
2812 |
+
<td>HC(284-297)</td>
|
2813 |
+
<td>1676.7947</td>
|
2814 |
+
<td>-0.16</td>
|
2815 |
+
<td></td>
|
2816 |
+
</tr>
|
2817 |
+
<tr>
|
2818 |
+
<td>4.64</td>
|
2819 |
+
<td>500.3070</td>
|
2820 |
+
<td>TKPR</td>
|
2821 |
+
<td>HC(298-301)</td>
|
2822 |
+
<td>500.3071</td>
|
2823 |
+
<td>-0.22</td>
|
2824 |
+
<td></td>
|
2825 |
+
</tr>
|
2826 |
+
<tr>
|
2827 |
+
<td>11.96</td>
|
2828 |
+
<td>1188.5044</td>
|
2829 |
+
<td>EEQYNSTYR</td>
|
2830 |
+
<td>HC(302-310)</td>
|
2831 |
+
<td>1188.5047</td>
|
2832 |
+
<td>-0.27</td>
|
2833 |
+
<td></td>
|
2834 |
+
</tr>
|
2835 |
+
<tr>
|
2836 |
+
<td>11.18</td>
|
2837 |
+
<td>2633.0350</td>
|
2838 |
+
<td>EEQYNSTYR</td>
|
2839 |
+
<td>HC(302-310)</td>
|
2840 |
+
<td>2633.0386</td>
|
2841 |
+
<td>-1.39</td>
|
2842 |
+
<td>G0F</td>
|
2843 |
+
</tr>
|
2844 |
+
<tr>
|
2845 |
+
<td>28.70</td>
|
2846 |
+
<td>1806.9988</td>
|
2847 |
+
<td>VVSVLTVLHQDWLNGK</td>
|
2848 |
+
<td>HC(311-326)</td>
|
2849 |
+
<td>1806.9992</td>
|
2850 |
+
<td>-0.26</td>
|
2851 |
+
<td></td>
|
2852 |
+
</tr>
|
2853 |
+
<tr>
|
2854 |
+
<td>27.74</td>
|
2855 |
+
<td>2227.1974</td>
|
2856 |
+
<td>VVSVLTVLHQDWLNGKEYK</td>
|
2857 |
+
<td>HC(311-329)</td>
|
2858 |
+
<td>2227.2001</td>
|
2859 |
+
<td>-1.23</td>
|
2860 |
+
<td></td>
|
2861 |
+
</tr>
|
2862 |
+
<tr>
|
2863 |
+
<td>6.58</td>
|
2864 |
+
<td>438.2111</td>
|
2865 |
+
<td>EYK</td>
|
2866 |
+
<td>HC(327-329)</td>
|
2867 |
+
<td>438.2115</td>
|
2868 |
+
<td>-0.78</td>
|
2869 |
+
<td></td>
|
2870 |
+
</tr>
|
2871 |
+
<tr>
|
2872 |
+
<td>1.98</td>
|
2873 |
+
<td>306.1358</td>
|
2874 |
+
<td>CK</td>
|
2875 |
+
<td>HC(330-331)</td>
|
2876 |
+
<td>306.1362</td>
|
2877 |
+
<td>-1.29</td>
|
2878 |
+
<td></td>
|
2879 |
+
</tr>
|
2880 |
+
</table>
|
2881 |
+
|
2882 |
+
|
2883 |
+
<figure>
|
2884 |
+
|
2885 |
+
RIC
|
2886 |
+
|
2887 |
+
<!-- PageFooter="biologics" -->
|
2888 |
+
|
2889 |
+
</figure>
|
2890 |
+
|
2891 |
+
|
2892 |
+
<!-- PageNumber="24" -->
|
2893 |
+
<!-- PageBreak -->
|
2894 |
+
|
2895 |
+
|
2896 |
+
<figure>
|
2897 |
+
</figure>
|
2898 |
+
|
2899 |
+
|
2900 |
+
## Results 18E2VL HIS LALA ABDEG - Identity
|
2901 |
+
|
2902 |
+
|
2903 |
+
<table>
|
2904 |
+
<tr>
|
2905 |
+
<th>RT</th>
|
2906 |
+
<th>Mass</th>
|
2907 |
+
<th>Sequence</th>
|
2908 |
+
<th>Seq Loc</th>
|
2909 |
+
<th>Tgt Seq Mass</th>
|
2910 |
+
<th>Diff (Bio, ppm)</th>
|
2911 |
+
<th>Pred Mods</th>
|
2912 |
+
</tr>
|
2913 |
+
<tr>
|
2914 |
+
<td>3.05</td>
|
2915 |
+
<td>446.2487</td>
|
2916 |
+
<td>VSNK</td>
|
2917 |
+
<td>HC(332-335)</td>
|
2918 |
+
<td>446.2489</td>
|
2919 |
+
<td>-0.55</td>
|
2920 |
+
<td></td>
|
2921 |
+
</tr>
|
2922 |
+
<tr>
|
2923 |
+
<td>28.16</td>
|
2924 |
+
<td>1695.0096</td>
|
2925 |
+
<td>VSNKALPAPIEKTISK</td>
|
2926 |
+
<td>HC(332-347)</td>
|
2927 |
+
<td>1694.9931</td>
|
2928 |
+
<td>9.77</td>
|
2929 |
+
<td></td>
|
2930 |
+
</tr>
|
2931 |
+
<tr>
|
2932 |
+
<td>18.00</td>
|
2933 |
+
<td>837.4958</td>
|
2934 |
+
<td>ALPAPIEK</td>
|
2935 |
+
<td>HC(336-343)</td>
|
2936 |
+
<td>837.4960</td>
|
2937 |
+
<td>-0.21</td>
|
2938 |
+
<td></td>
|
2939 |
+
</tr>
|
2940 |
+
<tr>
|
2941 |
+
<td>8.04</td>
|
2942 |
+
<td>447.2690</td>
|
2943 |
+
<td>TISK</td>
|
2944 |
+
<td>HC(344-347)</td>
|
2945 |
+
<td>447.2693</td>
|
2946 |
+
<td>-0.75</td>
|
2947 |
+
<td></td>
|
2948 |
+
</tr>
|
2949 |
+
<tr>
|
2950 |
+
<td>6.37</td>
|
2951 |
+
<td>655.3759</td>
|
2952 |
+
<td>AKGQPR</td>
|
2953 |
+
<td>HC(348-353)</td>
|
2954 |
+
<td>655.3766</td>
|
2955 |
+
<td>-1.07</td>
|
2956 |
+
<td></td>
|
2957 |
+
</tr>
|
2958 |
+
<tr>
|
2959 |
+
<td>5.31</td>
|
2960 |
+
<td>456.2435</td>
|
2961 |
+
<td>GQPR</td>
|
2962 |
+
<td>HC(350-353)</td>
|
2963 |
+
<td>456.2445</td>
|
2964 |
+
<td>-2.09</td>
|
2965 |
+
<td></td>
|
2966 |
+
</tr>
|
2967 |
+
<tr>
|
2968 |
+
<td>18.66</td>
|
2969 |
+
<td>1285.6660</td>
|
2970 |
+
<td>EPQVYTLPPSR</td>
|
2971 |
+
<td>HC(354-364)</td>
|
2972 |
+
<td>1285.6667</td>
|
2973 |
+
<td>-0.5</td>
|
2974 |
+
<td></td>
|
2975 |
+
</tr>
|
2976 |
+
<tr>
|
2977 |
+
<td>19.69</td>
|
2978 |
+
<td>1871.9618</td>
|
2979 |
+
<td>EPQVYTLPPSRDELTK</td>
|
2980 |
+
<td>HC(354-369)</td>
|
2981 |
+
<td>1871.9629</td>
|
2982 |
+
<td>-0.59</td>
|
2983 |
+
<td></td>
|
2984 |
+
</tr>
|
2985 |
+
<tr>
|
2986 |
+
<td>10.34</td>
|
2987 |
+
<td>604.3071</td>
|
2988 |
+
<td>DELTK</td>
|
2989 |
+
<td>HC(365-369)</td>
|
2990 |
+
<td>604.3068</td>
|
2991 |
+
<td>0.48</td>
|
2992 |
+
<td></td>
|
2993 |
+
</tr>
|
2994 |
+
<tr>
|
2995 |
+
<td>21.72</td>
|
2996 |
+
<td>1160.6226</td>
|
2997 |
+
<td>NQVSLTCLVK</td>
|
2998 |
+
<td>HC(370-379)</td>
|
2999 |
+
<td>1160.6224</td>
|
3000 |
+
<td>0.17</td>
|
3001 |
+
<td></td>
|
3002 |
+
</tr>
|
3003 |
+
<tr>
|
3004 |
+
<td>24.23</td>
|
3005 |
+
<td>2543.1202</td>
|
3006 |
+
<td>GFYPSDIAVEWESNGQPENNYK</td>
|
3007 |
+
<td>HC(380-401)</td>
|
3008 |
+
<td>2543.1241</td>
|
3009 |
+
<td>-1.55</td>
|
3010 |
+
<td></td>
|
3011 |
+
</tr>
|
3012 |
+
<tr>
|
3013 |
+
<td>25.94</td>
|
3014 |
+
<td>1872.9129</td>
|
3015 |
+
<td>TTPPVLDSDGSFFLYSK</td>
|
3016 |
+
<td>HC(402-418)</td>
|
3017 |
+
<td>1872.9146</td>
|
3018 |
+
<td>-0.88</td>
|
3019 |
+
<td></td>
|
3020 |
+
</tr>
|
3021 |
+
<tr>
|
3022 |
+
<td>12.41</td>
|
3023 |
+
<td>574.3326</td>
|
3024 |
+
<td>LTVDK</td>
|
3025 |
+
<td>HC(419-423)</td>
|
3026 |
+
<td>574.3326</td>
|
3027 |
+
<td>-0.09</td>
|
3028 |
+
<td></td>
|
3029 |
+
</tr>
|
3030 |
+
<tr>
|
3031 |
+
<td>16.06</td>
|
3032 |
+
<td>261.1445</td>
|
3033 |
+
<td>SR</td>
|
3034 |
+
<td>HC(424-425)</td>
|
3035 |
+
<td>261.1437</td>
|
3036 |
+
<td>2.98</td>
|
3037 |
+
<td></td>
|
3038 |
+
</tr>
|
3039 |
+
<tr>
|
3040 |
+
<td>23.23</td>
|
3041 |
+
<td>2019.9271</td>
|
3042 |
+
<td>WQQGNVFSCSVMHEALK</td>
|
3043 |
+
<td>HC(426-442)</td>
|
3044 |
+
<td>2019.9295</td>
|
3045 |
+
<td>-1.2</td>
|
3046 |
+
<td></td>
|
3047 |
+
</tr>
|
3048 |
+
<tr>
|
3049 |
+
<td>24.16</td>
|
3050 |
+
<td>2824.3141</td>
|
3051 |
+
<td>WQQGNVFSCSVMHEALKFHYTQK</td>
|
3052 |
+
<td>HC(426-448)</td>
|
3053 |
+
<td>2824.3214</td>
|
3054 |
+
<td>-2.58</td>
|
3055 |
+
<td></td>
|
3056 |
+
</tr>
|
3057 |
+
<tr>
|
3058 |
+
<td>12.51</td>
|
3059 |
+
<td>822.4014</td>
|
3060 |
+
<td>FHYTQK</td>
|
3061 |
+
<td>HC(443-448)</td>
|
3062 |
+
<td>822.4024</td>
|
3063 |
+
<td>-1.25</td>
|
3064 |
+
<td></td>
|
3065 |
+
</tr>
|
3066 |
+
<tr>
|
3067 |
+
<td>18.196</td>
|
3068 |
+
<td>659.3479</td>
|
3069 |
+
<td>SLSLSPG</td>
|
3070 |
+
<td>HC(449-455)</td>
|
3071 |
+
<td>659.3490</td>
|
3072 |
+
<td>-1.68</td>
|
3073 |
+
<td></td>
|
3074 |
+
</tr>
|
3075 |
+
<tr>
|
3076 |
+
<td>16.87</td>
|
3077 |
+
<td>787.4415</td>
|
3078 |
+
<td>SLSLSPGK</td>
|
3079 |
+
<td>HC(449-456)</td>
|
3080 |
+
<td>787.4440</td>
|
3081 |
+
<td>-3.09</td>
|
3082 |
+
<td></td>
|
3083 |
+
</tr>
|
3084 |
+
<tr>
|
3085 |
+
<td>22.65</td>
|
3086 |
+
<td>1957.0108</td>
|
3087 |
+
<td>SSELTQDPAVSVALGQTVR</td>
|
3088 |
+
<td>LC(001-019)</td>
|
3089 |
+
<td>1957.0116</td>
|
3090 |
+
<td>-0.45</td>
|
3091 |
+
<td></td>
|
3092 |
+
</tr>
|
3093 |
+
<tr>
|
3094 |
+
<td>8.99</td>
|
3095 |
+
<td>848.3805</td>
|
3096 |
+
<td>ITCQGDR</td>
|
3097 |
+
<td>LC(020-026)</td>
|
3098 |
+
<td>848.3811</td>
|
3099 |
+
<td>-0.67</td>
|
3100 |
+
<td></td>
|
3101 |
+
</tr>
|
3102 |
+
<tr>
|
3103 |
+
<td>8.03</td>
|
3104 |
+
<td>431.2489</td>
|
3105 |
+
<td>LGSR</td>
|
3106 |
+
<td>LC(027-030)</td>
|
3107 |
+
<td>431.2492</td>
|
3108 |
+
<td>-0.69</td>
|
3109 |
+
<td></td>
|
3110 |
+
</tr>
|
3111 |
+
<tr>
|
3112 |
+
<td>24.59</td>
|
3113 |
+
<td>2703.3425</td>
|
3114 |
+
<td>YIHWYQQKPGQAPVLVIYDDDR</td>
|
3115 |
+
<td>LC(031-052)</td>
|
3116 |
+
<td>2703.3445</td>
|
3117 |
+
<td>-0.75</td>
|
3118 |
+
<td></td>
|
3119 |
+
</tr>
|
3120 |
+
<tr>
|
3121 |
+
<td>23.77</td>
|
3122 |
+
<td>3581.8139</td>
|
3123 |
+
<td>YIHWYQQKPGQAPVLVIYDDDRRPSGIPDR</td>
|
3124 |
+
<td>LC(031-060)</td>
|
3125 |
+
<td>3581.8168</td>
|
3126 |
+
<td>-0.82</td>
|
3127 |
+
<td></td>
|
3128 |
+
</tr>
|
3129 |
+
<tr>
|
3130 |
+
<td>13.04</td>
|
3131 |
+
<td>896.4835</td>
|
3132 |
+
<td>RPSGIPDR</td>
|
3133 |
+
<td>LC(053-060)</td>
|
3134 |
+
<td>896.4828</td>
|
3135 |
+
<td>0.79</td>
|
3136 |
+
<td></td>
|
3137 |
+
</tr>
|
3138 |
+
<tr>
|
3139 |
+
<td>25.11</td>
|
3140 |
+
<td>5127.3093</td>
|
3141 |
+
<td>FSGSSSGNTASLTITGAQAEDEADYYCQSADSSGNPVFGGGTQLTVLGQPK</td>
|
3142 |
+
<td>LC(061-111)</td>
|
3143 |
+
<td>5127.3164</td>
|
3144 |
+
<td>-1.38</td>
|
3145 |
+
<td></td>
|
3146 |
+
</tr>
|
3147 |
+
<tr>
|
3148 |
+
<td>23.58</td>
|
3149 |
+
<td>1985.0087</td>
|
3150 |
+
<td>AAPSVTLFPPSSEELQANK</td>
|
3151 |
+
<td>LC(112-130)</td>
|
3152 |
+
<td>1985.0106</td>
|
3153 |
+
<td>-0.96</td>
|
3154 |
+
<td></td>
|
3155 |
+
</tr>
|
3156 |
+
<tr>
|
3157 |
+
<td>34.69</td>
|
3158 |
+
<td>4177.1399</td>
|
3159 |
+
<td>AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWK</td>
|
3160 |
+
<td>LC(112-150)</td>
|
3161 |
+
<td>4177.1446</td>
|
3162 |
+
<td>-1.11</td>
|
3163 |
+
<td></td>
|
3164 |
+
</tr>
|
3165 |
+
<tr>
|
3166 |
+
<td>33.08</td>
|
3167 |
+
<td>2210.1433</td>
|
3168 |
+
<td>ATLVCLISDFYPGAVTVAWK</td>
|
3169 |
+
<td>LC(131-150)</td>
|
3170 |
+
<td>2210.1446</td>
|
3171 |
+
<td>-0.59</td>
|
3172 |
+
<td></td>
|
3173 |
+
</tr>
|
3174 |
+
<tr>
|
3175 |
+
<td>10.21</td>
|
3176 |
+
<td>702.3546</td>
|
3177 |
+
<td>ADSSPVK</td>
|
3178 |
+
<td>LC(151-157)</td>
|
3179 |
+
<td>702.3548</td>
|
3180 |
+
<td>-0.26</td>
|
3181 |
+
<td></td>
|
3182 |
+
</tr>
|
3183 |
+
<tr>
|
3184 |
+
<td>11.55</td>
|
3185 |
+
<td>989.5026</td>
|
3186 |
+
<td>AGVETTTPSK</td>
|
3187 |
+
<td>LC(158-167)</td>
|
3188 |
+
<td>989.5029</td>
|
3189 |
+
<td>-0.31</td>
|
3190 |
+
<td></td>
|
3191 |
+
</tr>
|
3192 |
+
<tr>
|
3193 |
+
<td>1.96</td>
|
3194 |
+
<td>589.2812</td>
|
3195 |
+
<td>QSNNK</td>
|
3196 |
+
<td>LC(168-172)</td>
|
3197 |
+
<td>589.2820</td>
|
3198 |
+
<td>-1.34</td>
|
3199 |
+
<td></td>
|
3200 |
+
</tr>
|
3201 |
+
<tr>
|
3202 |
+
<td>24.35</td>
|
3203 |
+
<td>1742.8504</td>
|
3204 |
+
<td>YAASSYLSLTPEQWK</td>
|
3205 |
+
<td>LC(173-187)</td>
|
3206 |
+
<td>1742.8516</td>
|
3207 |
+
<td>-0.67</td>
|
3208 |
+
<td></td>
|
3209 |
+
</tr>
|
3210 |
+
<tr>
|
3211 |
+
<td>2.10</td>
|
3212 |
+
<td>398.2022</td>
|
3213 |
+
<td>SHR</td>
|
3214 |
+
<td>LC(188-190)</td>
|
3215 |
+
<td>398.2026</td>
|
3216 |
+
<td>-1.16</td>
|
3217 |
+
<td></td>
|
3218 |
+
</tr>
|
3219 |
+
<tr>
|
3220 |
+
<td>13.39</td>
|
3221 |
+
<td>1710.7512</td>
|
3222 |
+
<td>SYSCQVTHEGSTVEK</td>
|
3223 |
+
<td>LC(191-205)</td>
|
3224 |
+
<td>1710.7519</td>
|
3225 |
+
<td>-0.45</td>
|
3226 |
+
<td></td>
|
3227 |
+
</tr>
|
3228 |
+
<tr>
|
3229 |
+
<td>11.73</td>
|
3230 |
+
<td>863.3683</td>
|
3231 |
+
<td>TVAPTECS</td>
|
3232 |
+
<td>LC(206-213)</td>
|
3233 |
+
<td>863.3695</td>
|
3234 |
+
<td>-1.39</td>
|
3235 |
+
<td></td>
|
3236 |
+
</tr>
|
3237 |
+
</table>
|
3238 |
+
|
3239 |
+
|
3240 |
+
<figure>
|
3241 |
+
|
3242 |
+
RIC
|
3243 |
+
|
3244 |
+
</figure>
|
3245 |
+
|
3246 |
+
|
3247 |
+
<!-- PageFooter="biologics" -->
|
3248 |
+
<!-- PageNumber="25" -->
|
3249 |
+
<!-- PageBreak -->
|
3250 |
+
|
3251 |
+
|
3252 |
+
<figure>
|
3253 |
+
</figure>
|
3254 |
+
|
3255 |
+
|
3256 |
+
## Results 18E2VL HIS LALA ABDEG - Identity
|
3257 |
+
|
3258 |
+
|
3259 |
+
### >HEAVY CHAIN: 18E2VLHIS LALA ABDEG
|
3260 |
+
|
3261 |
+
EVOLLESGGGLVQPGGSLRLSCAASGFTFSSYVMSWVRQAPGKGLEWVSSIYHDGSHTYYADFVKGRFTISRDNSKNTLYLOMN
|
3262 |
+
SLRAEDTAVYYCAKGTSYSGSYYYTDPFFGSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN
|
3263 |
+
SGALTSGVHTFPAVLOSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPEAAGGPSVFLF
|
3264 |
+
PPKPKDTLYITREPEVTCVVVDVSHEDPEVKENWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA
|
3265 |
+
LPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLT
|
3266 |
+
VDKSRWQQGNVFSCSVMHEALKFHYTOKSLSLSPGK
|
3267 |
+
|
3268 |
+
|
3269 |
+
### >LIGHT CHAIN: 18E2VLHIS LALA ABDEG
|
3270 |
+
|
3271 |
+
SSELTQDPAVSVALGQTVRITCQGDRLGSRYIHWYQQKPGQAPVLVIYDDDRRPSGIPDRFSGSSSGNTASLTITGAQAEDEAD
|
3272 |
+
YYCOSADSSGNPVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ
|
3273 |
+
SNNKYAASSYLSLTPEQWKSHRSYSCOVTHEGSTVEKTVAPTECS
|
3274 |
+
|
3275 |
+
Sequence coverage of 99.4%
|
3276 |
+
|
3277 |
+
|
3278 |
+
<figure>
|
3279 |
+
|
3280 |
+
RIC
|
3281 |
+
|
3282 |
+
</figure>
|
3283 |
+
|
3284 |
+
|
3285 |
+
<!-- PageFooter="biologics" -->
|
3286 |
+
<!-- PageNumber="26" -->
|
3287 |
+
<!-- PageBreak -->
|
3288 |
+
|
3289 |
+
|
3290 |
+
<figure>
|
3291 |
+
</figure>
|
3292 |
+
|
3293 |
+
|
3294 |
+
## Results 18E2VL HIS LALA ABDEG - Modifications (oxidation)
|
3295 |
+
|
3296 |
+
|
3297 |
+
<table>
|
3298 |
+
<tr>
|
3299 |
+
<th>Sequence</th>
|
3300 |
+
<th>Seq Loc</th>
|
3301 |
+
<th>Modification</th>
|
3302 |
+
<th>18E2VL LALA ABDEG</th>
|
3303 |
+
<th>18E2VL LALA ABDEG T6w</th>
|
3304 |
+
</tr>
|
3305 |
+
<tr>
|
3306 |
+
<td>WQQGNVFSCSVMHEALK</td>
|
3307 |
+
<td>HC(426-442)</td>
|
3308 |
+
<td>Oxidation</td>
|
3309 |
+
<td>2.8 97.2</td>
|
3310 |
+
<td>13.3 86.7</td>
|
3311 |
+
</tr>
|
3312 |
+
</table>
|
3313 |
+
|
3314 |
+
BOLD: relevant increase upon stressing
|
3315 |
+
Note: Only modifications > 0.5% are reported
|
3316 |
+
|
3317 |
+
|
3318 |
+
<figure>
|
3319 |
+
</figure>
|
3320 |
+
|
3321 |
+
|
3322 |
+
RIC
|
3323 |
+
biologics
|
3324 |
+
|
3325 |
+
<!-- PageNumber="27" -->
|
3326 |
+
<!-- PageBreak -->
|
3327 |
+
|
3328 |
+
|
3329 |
+
<figure>
|
3330 |
+
</figure>
|
3331 |
+
|
3332 |
+
|
3333 |
+
## Results 18E2VL HIS LALA ABDEG - Modifications (deam/isoD)
|
3334 |
+
|
3335 |
+
|
3336 |
+
<table>
|
3337 |
+
<tr>
|
3338 |
+
<th>Sequence</th>
|
3339 |
+
<th>Seq Loc</th>
|
3340 |
+
<th>Modification</th>
|
3341 |
+
<th>18E2VL LALA ABDEG</th>
|
3342 |
+
<th>18E2VL LALA ABDEG T6w</th>
|
3343 |
+
</tr>
|
3344 |
+
<tr>
|
3345 |
+
<td rowspan="2">EVQLLESGGGLVQPGGSLR</td>
|
3346 |
+
<td rowspan="2">HC(1-19)</td>
|
3347 |
+
<td>Deamidation</td>
|
3348 |
+
<td>2.4</td>
|
3349 |
+
<td>2.4</td>
|
3350 |
+
</tr>
|
3351 |
+
<tr>
|
3352 |
+
<td></td>
|
3353 |
+
<td>97.6</td>
|
3354 |
+
<td>97.6</td>
|
3355 |
+
</tr>
|
3356 |
+
<tr>
|
3357 |
+
<td rowspan="2">NTLYLQMNSLR</td>
|
3358 |
+
<td rowspan="2">HC(77-87)</td>
|
3359 |
+
<td rowspan="2">Deamidation</td>
|
3360 |
+
<td>1.9</td>
|
3361 |
+
<td>3.2</td>
|
3362 |
+
</tr>
|
3363 |
+
<tr>
|
3364 |
+
<td>98.1</td>
|
3365 |
+
<td>96.8</td>
|
3366 |
+
</tr>
|
3367 |
+
<tr>
|
3368 |
+
<td rowspan="2">FNWYVDGVEVHNAK</td>
|
3369 |
+
<td rowspan="2">HC(284-297)</td>
|
3370 |
+
<td>IsoD</td>
|
3371 |
+
<td>0.7</td>
|
3372 |
+
<td>1.7</td>
|
3373 |
+
</tr>
|
3374 |
+
<tr>
|
3375 |
+
<td></td>
|
3376 |
+
<td>99.3</td>
|
3377 |
+
<td>98.3</td>
|
3378 |
+
</tr>
|
3379 |
+
<tr>
|
3380 |
+
<td rowspan="3">VVSVLTVLHQDWLNGK</td>
|
3381 |
+
<td rowspan="3">HC(311-326)</td>
|
3382 |
+
<td>Deamidation</td>
|
3383 |
+
<td>0.7</td>
|
3384 |
+
<td>1.7</td>
|
3385 |
+
</tr>
|
3386 |
+
<tr>
|
3387 |
+
<td></td>
|
3388 |
+
<td>96.9</td>
|
3389 |
+
<td>95.8</td>
|
3390 |
+
</tr>
|
3391 |
+
<tr>
|
3392 |
+
<td>Succinimide</td>
|
3393 |
+
<td>2.4</td>
|
3394 |
+
<td>2.5</td>
|
3395 |
+
</tr>
|
3396 |
+
<tr>
|
3397 |
+
<td rowspan="2">NQVSLTCLVK</td>
|
3398 |
+
<td rowspan="2">HC(370-379)</td>
|
3399 |
+
<td>Deamidation</td>
|
3400 |
+
<td>3.7</td>
|
3401 |
+
<td>5.9</td>
|
3402 |
+
</tr>
|
3403 |
+
<tr>
|
3404 |
+
<td></td>
|
3405 |
+
<td>96.3</td>
|
3406 |
+
<td>94.1</td>
|
3407 |
+
</tr>
|
3408 |
+
<tr>
|
3409 |
+
<td rowspan="2">GFYPSDIAVEWESNGQPENNYK</td>
|
3410 |
+
<td rowspan="2">HC(380-401)</td>
|
3411 |
+
<td rowspan="2">Deamidation</td>
|
3412 |
+
<td>6.9</td>
|
3413 |
+
<td>27.4</td>
|
3414 |
+
</tr>
|
3415 |
+
<tr>
|
3416 |
+
<td>93.1</td>
|
3417 |
+
<td>72.6</td>
|
3418 |
+
</tr>
|
3419 |
+
<tr>
|
3420 |
+
<td>TTPPVLDSDGSFFLYSK</td>
|
3421 |
+
<td>HC(402-418)</td>
|
3422 |
+
<td>IsoD</td>
|
3423 |
+
<td>1.0 99.0</td>
|
3424 |
+
<td>1.5 98.5</td>
|
3425 |
+
</tr>
|
3426 |
+
</table>
|
3427 |
+
|
3428 |
+
BOLD: relevant increase upon stressing
|
3429 |
+
|
3430 |
+
Note: Only modifications > 0.5% are reported
|
3431 |
+
|
3432 |
+
|
3433 |
+
<figure>
|
3434 |
+
</figure>
|
3435 |
+
|
3436 |
+
|
3437 |
+
RIC
|
3438 |
+
biologics
|
3439 |
+
|
3440 |
+
<!-- PageNumber="28" -->
|
3441 |
+
<!-- PageBreak -->
|
3442 |
+
|
3443 |
+
|
3444 |
+
<figure>
|
3445 |
+
</figure>
|
3446 |
+
|
3447 |
+
|
3448 |
+
<!-- PageHeader="Results 18E2VL HIS LALA ABDEG - Modifications (pyroE)" -->
|
3449 |
+
|
3450 |
+
|
3451 |
+
<table>
|
3452 |
+
<tr>
|
3453 |
+
<th>Sequence</th>
|
3454 |
+
<th>Seq Loc</th>
|
3455 |
+
<th>Modification</th>
|
3456 |
+
<th>18E2VL LALA ABDEG</th>
|
3457 |
+
<th>18E2VL LALA ABDEG T6w</th>
|
3458 |
+
</tr>
|
3459 |
+
<tr>
|
3460 |
+
<td>EVQLLESGGGLVQPGGSLR</td>
|
3461 |
+
<td>HC(1-19)</td>
|
3462 |
+
<td>PyroE</td>
|
3463 |
+
<td>2.1 97.9</td>
|
3464 |
+
<td>11.1 88.9</td>
|
3465 |
+
</tr>
|
3466 |
+
</table>
|
3467 |
+
|
3468 |
+
|
3469 |
+
<figure>
|
3470 |
+
|
3471 |
+
RIC
|
3472 |
+
|
3473 |
+
</figure>
|
3474 |
+
|
3475 |
+
|
3476 |
+
<!-- PageFooter="biologics" -->
|
3477 |
+
<!-- PageNumber="29" -->
|
3478 |
+
<!-- PageBreak -->
|
3479 |
+
|
3480 |
+
|
3481 |
+
<figure>
|
3482 |
+
</figure>
|
3483 |
+
|
3484 |
+
|
3485 |
+
## Results 18E2VL HIS LALA ABDEG - Modifications
|
3486 |
+
|
3487 |
+
|
3488 |
+
### >HEAVY CHAIN: 18E2VLHIS
|
3489 |
+
|
3490 |
+
EVOLLESGGGLVQPGGSLRLSCAASGFTFSSYVMSWVRQAPGKGLEWVSSIYHDGSHTYYADFVKGRFTISRDNSKNTLYLQMN
|
3491 |
+
SLRAEDTAVYYCAKGTSYSGSYYYTDPFFGSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN
|
3492 |
+
SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPEAAGGPSVFLF
|
3493 |
+
PPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA
|
3494 |
+
LPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLT
|
3495 |
+
VDKSRWQQGNVFSCSVMHEALKFHYTQKSLSLSPGK
|
3496 |
+
|
3497 |
+
|
3498 |
+
### >LIGHT CHAIN : 18E2VLHIS
|
3499 |
+
|
3500 |
+
SSELTQDPAVSVALGQTVRITCQGDRLGSRYIHWYQQKPGQAPVLVIYDDDRRPSGIPDRFSGSSSGNTASLTITGAQAEDEAD
|
3501 |
+
YYCOSADSSGNPVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ
|
3502 |
+
SNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
|
3503 |
+
|
3504 |
+
|
3505 |
+
<figure>
|
3506 |
+
|
3507 |
+
RIC
|
3508 |
+
|
3509 |
+
</figure>
|
3510 |
+
|
3511 |
+
|
3512 |
+
<!-- PageFooter="biologics" -->
|
3513 |
+
<!-- PageNumber="30" -->
|
3514 |
+
<!-- PageBreak -->
|
3515 |
+
|
3516 |
+
|
3517 |
+
<figure>
|
3518 |
+
</figure>
|
3519 |
+
|
3520 |
+
|
3521 |
+
## Conclusions
|
3522 |
+
|
3523 |
+
· Near complete sequence coverage obtained for all molecules studied
|
3524 |
+
|
3525 |
+
. Nevertheless, partially digested material observed in samples 18E2HIS2-ABDEG and 18E2VLHIS-LALA-
|
3526 |
+
ABDEG (not hampering data interpretation)
|
3527 |
+
|
3528 |
+
· Peptide mapping of Ligelizumab mAB 37reveals
|
3529 |
+
|
3530 |
+
· 4 sites prone to oxidation upon stressing of which three located in the variable part of the heavy chain
|
3531 |
+
|
3532 |
+
· 1 site located in the conserved region of the heavy chain prone to deamidation upon stressing
|
3533 |
+
|
3534 |
+
· Heavy chain N-terminus is fully cyclic (pyroE) and C-terminus predominantly lysine truncated
|
3535 |
+
|
3536 |
+
· Peptide mapping of 18E2HIS2-ABDEG and 18E2VLHIS-LALA-ABDEG reveals
|
3537 |
+
|
3538 |
+
· 1 site located in the conserved region of the heavy chain prone to oxidation upon stressing
|
3539 |
+
|
3540 |
+
· 1 site located in the conserved region of the heavy chain prone to deamidation upon stressing
|
3541 |
+
|
3542 |
+
· Partial cyclization of the heavy chain N-terminus observed upon stressing
|
3543 |
+
|
3544 |
+
· No major liabilities detected in the CDRs upon stressing
|
3545 |
+
|
3546 |
+
· Peptide mapping of OMA VH15G55H VL3S31H reveals
|
3547 |
+
|
3548 |
+
· Complete degradation upon storage
|
3549 |
+
|
3550 |
+
|
3551 |
+
<figure>
|
3552 |
+
|
3553 |
+
RIC
|
3554 |
+
|
3555 |
+
</figure>
|
3556 |
+
|
3557 |
+
|
3558 |
+
<!-- PageFooter="biologics" -->
|
3559 |
+
<!-- PageNumber="31" -->
|
3560 |
+
<!-- PageBreak -->
|
3561 |
+
|
3562 |
+
|
3563 |
+
<figure>
|
3564 |
+
</figure>
|
3565 |
+
|
3566 |
+
|
3567 |
+
## Signature section RIC
|
3568 |
+
|
3569 |
+
|
3570 |
+
### Author
|
3571 |
+
|
3572 |
+
|
3573 |
+
<table>
|
3574 |
+
<tr>
|
3575 |
+
<td>Gianni Vandenborre</td>
|
3576 |
+
<td>Date: 15 FEB 2021</td>
|
3577 |
+
</tr>
|
3578 |
+
<tr>
|
3579 |
+
<td>Sr Scientist Biologics | Project Manager</td>
|
3580 |
+
<td>10 Signature:</td>
|
3581 |
+
</tr>
|
3582 |
+
<tr>
|
3583 |
+
<td colspan="2">Reviewer</td>
|
3584 |
+
</tr>
|
3585 |
+
<tr>
|
3586 |
+
<td>An Cerdobbel Ph.D.</td>
|
3587 |
+
<td>Date: 16 FEB 2021</td>
|
3588 |
+
</tr>
|
3589 |
+
<tr>
|
3590 |
+
<td>Head of Biologics Department</td>
|
3591 |
+
<td>Signature: Cedobre</td>
|
3592 |
+
</tr>
|
3593 |
+
<tr>
|
3594 |
+
<td colspan="2">Approver</td>
|
3595 |
+
</tr>
|
3596 |
+
<tr>
|
3597 |
+
<td>Koen Sandra Ph.D.</td>
|
3598 |
+
<td>Date: 1 MAR 2021</td>
|
3599 |
+
</tr>
|
3600 |
+
<tr>
|
3601 |
+
<td>Scientific Director</td>
|
3602 |
+
<td>Signature:</td>
|
3603 |
+
</tr>
|
3604 |
+
</table>
|
3605 |
+
|
3606 |
+
|
3607 |
+
<figure>
|
3608 |
+
|
3609 |
+
RIC
|
3610 |
+
|
3611 |
+
</figure>
|
3612 |
+
|
3613 |
+
|
3614 |
+
<!-- PageFooter="biologics" -->
|
3615 |
+
<!-- PageNumber="32" -->
|
3616 |
+
<!-- PageBreak -->
|
3617 |
+
|
3618 |
+
|
3619 |
+
<figure>
|
3620 |
+
</figure>
|
3621 |
+
|
3622 |
+
|
3623 |
+
# Version control
|
3624 |
+
|
3625 |
+
|
3626 |
+
<table>
|
3627 |
+
<tr>
|
3628 |
+
<th>Version</th>
|
3629 |
+
<th>Date of issue</th>
|
3630 |
+
<th>Reason for version update</th>
|
3631 |
+
</tr>
|
3632 |
+
<tr>
|
3633 |
+
<td>01</td>
|
3634 |
+
<td>30-JUL-2020</td>
|
3635 |
+
<td>First issue</td>
|
3636 |
+
</tr>
|
3637 |
+
</table>
|
3638 |
+
|
3639 |
+
|
3640 |
+
<figure>
|
3641 |
+
|
3642 |
+
<!-- PageFooter="RIC" -->
|
3643 |
+
|
3644 |
+
</figure>
|
3645 |
+
|
3646 |
+
|
3647 |
+
<!-- PageFooter="biologics" -->
|
3648 |
+
<!-- PageNumber="33" -->
|
3649 |
+
<!-- PageBreak -->
|
3650 |
+
|
3651 |
+
|
3652 |
+
<figure>
|
3653 |
+
|
3654 |
+
RIC
|
3655 |
+
|
3656 |
+
biologics
|
3657 |
+
|
3658 |
+
</figure>
|
3659 |
+
|
3660 |
+
|
3661 |
+
YOUR MOLECULE. OUR ANALYTICS. NO SECRETS.
|
3662 |
+
|
3663 |
+
<!-- PageFooter="www.RICbiologics.com" -->
|
logs/di_content/di_content_20250604_141118.txt
ADDED
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ADDED
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|
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|
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|
|
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|
|
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|
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|
|
|
|
|
|
|
|
1 |
+
# ARGX DISCOVERY: EVALUATION OF LIABILITIES IN VH AND VL REGION OF TWO CONSTRUCTS
|
2 |
+
|
3 |
+
Argenx - P3016_R04_v01
|
4 |
+
|
5 |
+
|
6 |
+
<figure>
|
7 |
+
|
8 |
+
RIC
|
9 |
+
|
10 |
+
biologics
|
11 |
+
|
12 |
+
</figure>
|
13 |
+
|
14 |
+
|
15 |
+
<!-- PageBreak -->
|
16 |
+
|
17 |
+
|
18 |
+
<figure>
|
19 |
+
</figure>
|
20 |
+
|
21 |
+
|
22 |
+
<!-- PageHeader="Table of contents" -->
|
23 |
+
|
24 |
+
l Project information
|
25 |
+
|
26 |
+
Scope
|
27 |
+
|
28 |
+
l Test samples
|
29 |
+
|
30 |
+
l
|
31 |
+
Method
|
32 |
+
|
33 |
+
l
|
34 |
+
Results
|
35 |
+
|
36 |
+
· P052_OA-02A10-GLLiab4His1_0-hlgG1-CH2-CH3-LALAPG-ABDEG-FJB_2024-01-
|
37 |
+
26_002
|
38 |
+
|
39 |
+
· P052_OA-02A10-GLLiab4+Liab11-His1_0-hlgG1-CH2-CH3-LALAPG-ABDEG-
|
40 |
+
FJB_2024-01-26_001
|
41 |
+
|
42 |
+
l
|
43 |
+
Conclusions
|
44 |
+
|
45 |
+
|
46 |
+
<figure>
|
47 |
+
|
48 |
+
RIC
|
49 |
+
|
50 |
+
</figure>
|
51 |
+
|
52 |
+
|
53 |
+
<!-- PageFooter="biologics" -->
|
54 |
+
<!-- PageNumber="2" -->
|
55 |
+
<!-- PageBreak -->
|
56 |
+
|
57 |
+
|
58 |
+
<figure>
|
59 |
+
</figure>
|
60 |
+
|
61 |
+
|
62 |
+
## Project information
|
63 |
+
|
64 |
+
|
65 |
+
<table>
|
66 |
+
<tr>
|
67 |
+
<td>Sales quote:</td>
|
68 |
+
<td>SQ20202722</td>
|
69 |
+
</tr>
|
70 |
+
<tr>
|
71 |
+
<td>l Project code:</td>
|
72 |
+
<td>P3016</td>
|
73 |
+
</tr>
|
74 |
+
<tr>
|
75 |
+
<td>l LNB number:</td>
|
76 |
+
<td>2023.040</td>
|
77 |
+
</tr>
|
78 |
+
<tr>
|
79 |
+
<td>l Project responsible:</td>
|
80 |
+
<td>Nathan Cardon</td>
|
81 |
+
</tr>
|
82 |
+
<tr>
|
83 |
+
<td>l Report name:</td>
|
84 |
+
<td>P3016_R04_v01</td>
|
85 |
+
</tr>
|
86 |
+
</table>
|
87 |
+
|
88 |
+
|
89 |
+
<figure>
|
90 |
+
|
91 |
+
RIC
|
92 |
+
|
93 |
+
</figure>
|
94 |
+
|
95 |
+
|
96 |
+
<!-- PageFooter="biologics" -->
|
97 |
+
<!-- PageNumber="3" -->
|
98 |
+
<!-- PageBreak -->
|
99 |
+
|
100 |
+
|
101 |
+
<figure>
|
102 |
+
</figure>
|
103 |
+
|
104 |
+
|
105 |
+
Scope
|
106 |
+
|
107 |
+
l This report describes the results of a liability assessment for two Argenx
|
108 |
+
discovery constructs. Non-stressed and temperature-stressed samples
|
109 |
+
stored for four weeks at 37℃ were evaluated by reduced protein RPLC-UV-
|
110 |
+
MS and peptide map analysis.
|
111 |
+
|
112 |
+
|
113 |
+
<figure>
|
114 |
+
|
115 |
+
RIC
|
116 |
+
|
117 |
+
</figure>
|
118 |
+
|
119 |
+
|
120 |
+
<!-- PageFooter="biologics" -->
|
121 |
+
<!-- PageNumber="4" -->
|
122 |
+
<!-- PageBreak -->
|
123 |
+
|
124 |
+
|
125 |
+
<figure>
|
126 |
+
</figure>
|
127 |
+
|
128 |
+
|
129 |
+
## Test samples
|
130 |
+
|
131 |
+
The samples used in this study are listed below
|
132 |
+
|
133 |
+
|
134 |
+
<table>
|
135 |
+
<tr>
|
136 |
+
<th>Construct</th>
|
137 |
+
<th>Storage condition</th>
|
138 |
+
<th>Concentration (mg/ml)</th>
|
139 |
+
</tr>
|
140 |
+
<tr>
|
141 |
+
<td rowspan="2">P052_OA-02A10-GLLiab4His1_0-hIgG1-CH2- CH3-LALAPG-ABDEG-FJB_2024-01-26_002</td>
|
142 |
+
<td>T0</td>
|
143 |
+
<td>1.0</td>
|
144 |
+
</tr>
|
145 |
+
<tr>
|
146 |
+
<td>T4w 37°℃</td>
|
147 |
+
<td>1.0</td>
|
148 |
+
</tr>
|
149 |
+
<tr>
|
150 |
+
<td rowspan="2">P052_OA-02A10-GLLiab4+Liab11-His1_0- hIgG1-CH2-CH3-LALAPG-ABDEG-FJB_2024- 01-26_001</td>
|
151 |
+
<td>T0</td>
|
152 |
+
<td>1.0</td>
|
153 |
+
</tr>
|
154 |
+
<tr>
|
155 |
+
<td>T4w 37℃</td>
|
156 |
+
<td>1.0</td>
|
157 |
+
</tr>
|
158 |
+
</table>
|
159 |
+
|
160 |
+
|
161 |
+
Note: all antibodies are in an One-Armed (OA) format
|
162 |
+
|
163 |
+
|
164 |
+
<figure>
|
165 |
+
|
166 |
+
RIC
|
167 |
+
|
168 |
+
</figure>
|
169 |
+
|
170 |
+
|
171 |
+
<!-- PageFooter="biologics" -->
|
172 |
+
<!-- PageNumber="5" -->
|
173 |
+
<!-- PageBreak -->
|
174 |
+
|
175 |
+
|
176 |
+
<figure>
|
177 |
+
</figure>
|
178 |
+
|
179 |
+
|
180 |
+
## Method: Protein analysis by RPLC-(UV)-MS
|
181 |
+
|
182 |
+
l The samples were reduced by incubation with DTT while in denaturing
|
183 |
+
conditions. The samples were analyzed using a C8 RPLC column on a 1290
|
184 |
+
Infinity UHPLC system coupled to a 6530 Q-TOF mass spectrometer (both
|
185 |
+
from Agilent Technologies).
|
186 |
+
|
187 |
+
l RPLC was performed with trifluoroacetic acid (TFA) as ion pairing additive,
|
188 |
+
and with H2O and acetonitrile as mobile phases.
|
189 |
+
|
190 |
+
l Data acquisition and processing were performed with BioConfirm
|
191 |
+
MassHunter 7.0 (Agilent Technologies). UV 280 nm and MS data were
|
192 |
+
acquired simultaneously.
|
193 |
+
|
194 |
+
|
195 |
+
<figure>
|
196 |
+
|
197 |
+
RIC
|
198 |
+
|
199 |
+
</figure>
|
200 |
+
|
201 |
+
|
202 |
+
<!-- PageFooter="biologics" -->
|
203 |
+
<!-- PageNumber="6" -->
|
204 |
+
<!-- PageBreak -->
|
205 |
+
|
206 |
+
|
207 |
+
<figure>
|
208 |
+
</figure>
|
209 |
+
|
210 |
+
|
211 |
+
## Method: Peptide map analysis in reducing conditions
|
212 |
+
|
213 |
+
l
|
214 |
+
Prior to digestion, the samples were reduced using dithiothreitol (DTT), and alkylated
|
215 |
+
with iodoacetamide (IAA). The samples were digested using trypsin as protease.
|
216 |
+
|
217 |
+
l The digests were analyzed on RPLC-MS using a C18 RPLC column. RPLC was performed
|
218 |
+
with formic acid (FA) as additive, and with H2O and acetonitrile as mobile phases. The
|
219 |
+
analyses were performed on a 1290 Infinity UHPLC system (Agilent Technologies) coupled
|
220 |
+
to a 6540 Q-TOF Mass Spectrometer (Agilent Technologies) operated in MS and MS/MS
|
221 |
+
mode.
|
222 |
+
|
223 |
+
l Data processing was performed using BioConfirm 10.0 and MassHunter 7.0 (Agilent
|
224 |
+
Technologies).
|
225 |
+
|
226 |
+
l Measured signals were matched onto the sequence. Identification was based primarily
|
227 |
+
on MS-only data. Enzyme specified was trypsin (C-terminal cleavage at lysine or arginine)
|
228 |
+
and 0-2 missed cleavages were allowed. N-terminal cyclization (pyroglutamate from E/Q),
|
229 |
+
D isomerization, N/Q deamidation, M/W oxidation and N-glycosylation were considered
|
230 |
+
as variable modifications while cysteine carbamidomethylation (sample preparation
|
231 |
+
related) was considered as fixed modification. Peak areas from extracted ion
|
232 |
+
chromatograms (EICs) were used for quantifying modifications.
|
233 |
+
|
234 |
+
l Note that peptide map data processing was focused on the variable regions of the
|
235 |
+
constructs.
|
236 |
+
|
237 |
+
|
238 |
+
<figure>
|
239 |
+
|
240 |
+
RIC
|
241 |
+
|
242 |
+
</figure>
|
243 |
+
|
244 |
+
|
245 |
+
biologics
|
246 |
+
|
247 |
+
<!-- PageNumber="7" -->
|
248 |
+
<!-- PageBreak -->
|
249 |
+
|
250 |
+
|
251 |
+
<figure>
|
252 |
+
</figure>
|
253 |
+
|
254 |
+
|
255 |
+
P052_OA-02A10-GLLIAB4HIS1_0-HIGG1-CH2-CH3-LALAPG-ABDEG-
|
256 |
+
FJB_2024-01-26_002
|
257 |
+
|
258 |
+
<!-- PageBreak -->
|
259 |
+
|
260 |
+
|
261 |
+
<figure>
|
262 |
+
</figure>
|
263 |
+
|
264 |
+
|
265 |
+
## Results: AA sequence
|
266 |
+
|
267 |
+
l
|
268 |
+
|
269 |
+
AA sequence of GLLiab4_Heavy_Knob_LALAPG_ABDEG (MW (G0F): 50740.4 Da)
|
270 |
+
|
271 |
+
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYVMSWVRQAPGKGLEWVSHIQGGGITSYADSVKGRFTISRDNSKNTLYLQ
|
272 |
+
MNSLRAEDTAVYYCAKWLVDYGLGNRGSMDYWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV
|
273 |
+
SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPEAAGGPS
|
274 |
+
VFLFPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKC
|
275 |
+
KVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLWCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSF
|
276 |
+
FLYSKLTVDKSRWQQGNVFSCSVMHEALKFHYTQKSLSLSPG
|
277 |
+
|
278 |
+
l AA sequence of GLHis1_Light_CL1 (MW (pyroQ): 23646.43 Da)
|
279 |
+
|
280 |
+
QAVLTQPPSLSASPGASARLTCSLSSGTIVHGYHINWYQQKAGSPPRYLLRFYSDSNKHQGSGVPSRFSGSKDASANAGILLIS
|
281 |
+
GLQPEDEADYYCGTYHSNTGTYVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK
|
282 |
+
AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
|
283 |
+
|
284 |
+
l AA sequence of CH2_CH3_Hole_LALAPG_ABDEG (MW (G0F) 26719.1 Da)
|
285 |
+
|
286 |
+
DKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV
|
287 |
+
VSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLSCAVKGFYPSDIAVEWESNG
|
288 |
+
QPENNYKTTPPVLDSDGSFFLVSKLTVDKSRWQQGNVFSCSVMHEALKFHYTQKSLSLS
|
289 |
+
|
290 |
+
|
291 |
+
<figure>
|
292 |
+
|
293 |
+
RIC
|
294 |
+
|
295 |
+
<!-- PageFooter="biologics" -->
|
296 |
+
|
297 |
+
</figure>
|
298 |
+
|
299 |
+
|
300 |
+
<table>
|
301 |
+
<tr>
|
302 |
+
<td>Blue:</td>
|
303 |
+
<td>VH and VL</td>
|
304 |
+
</tr>
|
305 |
+
<tr>
|
306 |
+
<td>Green:</td>
|
307 |
+
<td>N-glycosylation site</td>
|
308 |
+
</tr>
|
309 |
+
<tr>
|
310 |
+
<td>Red:</td>
|
311 |
+
<td>N-terminal cyclization</td>
|
312 |
+
</tr>
|
313 |
+
</table>
|
314 |
+
|
315 |
+
|
316 |
+
<!-- PageNumber="9" -->
|
317 |
+
<!-- PageBreak -->
|
318 |
+
|
319 |
+
|
320 |
+
<figure>
|
321 |
+
</figure>
|
322 |
+
|
323 |
+
|
324 |
+
## Results: reduced RPLC-UV-MS
|
325 |
+
|
326 |
+
|
327 |
+
### l
|
328 |
+
|
329 |
+
|
330 |
+
#### Overlays of the UV214nm profiles
|
331 |
+
|
332 |
+
|
333 |
+
<figure>
|
334 |
+
|
335 |
+
x10 2
|
336 |
+
|
337 |
+
DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P3016_Molecule1_W0_C8_19MAR2024.d
|
338 |
+
|
339 |
+
HC_Knob
|
340 |
+
|
341 |
+
6.5
|
342 |
+
|
343 |
+
T0
|
344 |
+
|
345 |
+
6
|
346 |
+
|
347 |
+
T4w 37℃
|
348 |
+
|
349 |
+
x: Unknown fragment (13463 Da)
|
350 |
+
|
351 |
+
0: GG clip (G144-G452)
|
352 |
+
|
353 |
+
6
|
354 |
+
|
355 |
+
Hole
|
356 |
+
|
357 |
+
y: Intact LC without pyroQ
|
358 |
+
|
359 |
+
1: GG clip (G55-G452)
|
360 |
+
|
361 |
+
5.5
|
362 |
+
|
363 |
+
z: Intact LC (pyroQ) + LC fragments:
|
364 |
+
|
365 |
+
2: NS clip (73-452)
|
366 |
+
|
367 |
+
5
|
368 |
+
|
369 |
+
b
|
370 |
+
|
371 |
+
LC
|
372 |
+
|
373 |
+
N terminal Q loss
|
374 |
+
|
375 |
+
3: - 17 Da (potentially HC +
|
376 |
+
succinimide)
|
377 |
+
|
378 |
+
C-terminal S loss
|
379 |
+
|
380 |
+
4.5
|
381 |
+
|
382 |
+
a: M oxidation: Hydroxy-y-lactam
|
383 |
+
|
384 |
+
z
|
385 |
+
|
386 |
+
b: Intact Hole
|
387 |
+
|
388 |
+
C-terminal CS loss
|
389 |
+
|
390 |
+
4: Traces oxidation (+32 Da)
|
391 |
+
|
392 |
+
5: Oxidation (+16Da)
|
393 |
+
|
394 |
+
4
|
395 |
+
|
396 |
+
c: N-terminal DK loss
|
397 |
+
|
398 |
+
6: Intact HC_knob
|
399 |
+
|
400 |
+
3.5
|
401 |
+
|
402 |
+
7: PyroE
|
403 |
+
|
404 |
+
8: DP clip (E1-D276)
|
405 |
+
|
406 |
+
3
|
407 |
+
|
408 |
+
2.5
|
409 |
+
|
410 |
+
2
|
411 |
+
|
412 |
+
Unknown fragment*
|
413 |
+
|
414 |
+
7
|
415 |
+
|
416 |
+
1.5
|
417 |
+
|
418 |
+
1
|
419 |
+
|
420 |
+
c
|
421 |
+
|
422 |
+
0.5
|
423 |
+
|
424 |
+
x
|
425 |
+
|
426 |
+
5
|
427 |
+
|
428 |
+
a
|
429 |
+
|
430 |
+
y
|
431 |
+
|
432 |
+
0
|
433 |
+
|
434 |
+
1
|
435 |
+
|
436 |
+
2
|
437 |
+
|
438 |
+
3
|
439 |
+
|
440 |
+
4
|
441 |
+
|
442 |
+
8
|
443 |
+
|
444 |
+
0
|
445 |
+
|
446 |
+
2
|
447 |
+
|
448 |
+
3
|
449 |
+
|
450 |
+
4
|
451 |
+
|
452 |
+
5
|
453 |
+
|
454 |
+
6
|
455 |
+
|
456 |
+
7
|
457 |
+
|
458 |
+
8
|
459 |
+
|
460 |
+
9
|
461 |
+
|
462 |
+
10
|
463 |
+
|
464 |
+
Response Units vs. Acquisition Time (min)
|
465 |
+
|
466 |
+
11
|
467 |
+
|
468 |
+
12
|
469 |
+
|
470 |
+
13
|
471 |
+
|
472 |
+
14
|
473 |
+
|
474 |
+
15
|
475 |
+
|
476 |
+
16
|
477 |
+
|
478 |
+
17
|
479 |
+
|
480 |
+
18
|
481 |
+
|
482 |
+
19
|
483 |
+
|
484 |
+
20
|
485 |
+
|
486 |
+
21
|
487 |
+
|
488 |
+
22
|
489 |
+
|
490 |
+
23
|
491 |
+
|
492 |
+
24
|
493 |
+
|
494 |
+
</figure>
|
495 |
+
|
496 |
+
\* No MS data for this peak (falls outside the
|
497 |
+
measurement window)
|
498 |
+
|
499 |
+
Color legend:
|
500 |
+
|
501 |
+
Black: clear identity on RPLC-UV-MS
|
502 |
+
|
503 |
+
Blue: modification with clear trend visible on RPLC-UV-MS
|
504 |
+
Blue: modification in variable region also confirmed in peptide
|
505 |
+
mapping
|
506 |
+
|
507 |
+
|
508 |
+
Grey: most likely method induced modification
|
509 |
+
|
510 |
+
|
511 |
+
<figure>
|
512 |
+
</figure>
|
513 |
+
|
514 |
+
|
515 |
+
RIC
|
516 |
+
|
517 |
+
<!-- PageFooter="biologics" -->
|
518 |
+
<!-- PageNumber="10" -->
|
519 |
+
<!-- PageBreak -->
|
520 |
+
|
521 |
+
|
522 |
+
<figure>
|
523 |
+
</figure>
|
524 |
+
|
525 |
+
|
526 |
+
## Results: reduced RPLC-UV-MS
|
527 |
+
|
528 |
+
|
529 |
+
### l Deconvoluted spectra of Hole, LC and HC_Knob (peak b, peak z and peak 6)
|
530 |
+
|
531 |
+
×10 6
|
532 |
+
|
533 |
+
+ESI Scan (rt: 9.2-10.1 min, 89 scans) Frag=200.0V P3016_Molecule1_W0_C8_19MAR2024.d Deconvoluted (Isotope Width=10.0)
|
534 |
+
|
535 |
+
1.25
|
536 |
+
|
537 |
+
26717.06
|
538 |
+
|
539 |
+
Theoretical mass Hole (G0F): 26719.1 Da
|
540 |
+
|
541 |
+
1
|
542 |
+
|
543 |
+
0.75
|
544 |
+
|
545 |
+
0.5
|
546 |
+
|
547 |
+
0.25
|
548 |
+
|
549 |
+
0
|
550 |
+
|
551 |
+
21343.69
|
552 |
+
|
553 |
+
LL
|
554 |
+
|
555 |
+
32883.11
|
556 |
+
|
557 |
+
+ESI Scan (rt: 12.9-13.5 min, 60 scans) Frag=200.0V P3016_Molecule1_W0_C8_19MAR2024.d Deconvoluted (Isotope Width=10.0)
|
558 |
+
|
559 |
+
×10 6
|
560 |
+
|
561 |
+
2.5
|
562 |
+
|
563 |
+
23644.69
|
564 |
+
|
565 |
+
Theoretical mass LC (pyroQ): 23646.4 Da
|
566 |
+
|
567 |
+
2
|
568 |
+
|
569 |
+
1.5
|
570 |
+
|
571 |
+
1
|
572 |
+
|
573 |
+
0.5
|
574 |
+
|
575 |
+
15375.35
|
576 |
+
|
577 |
+
25932.56
|
578 |
+
|
579 |
+
30286.33
|
580 |
+
|
581 |
+
0
|
582 |
+
|
583 |
+
x10 5
|
584 |
+
|
585 |
+
+ESI Scan (rt: 16.4-21.6 min, 519 scans) Frag=200.0V P3016_Molecule1_W0_C8_19MAR2024.d Deconvoluted (Isotope Width=14.1)
|
586 |
+
|
587 |
+
|
588 |
+
<figure>
|
589 |
+
|
590 |
+
Theoretical mass HC_knob (G0F): 50740.4 Da
|
591 |
+
|
592 |
+
50736.55
|
593 |
+
|
594 |
+
0.8
|
595 |
+
|
596 |
+
0.6
|
597 |
+
|
598 |
+
0.4
|
599 |
+
|
600 |
+
0.2
|
601 |
+
|
602 |
+
0
|
603 |
+
|
604 |
+
43809.72
|
605 |
+
|
606 |
+
58410.62
|
607 |
+
|
608 |
+
10000
|
609 |
+
|
610 |
+
12500
|
611 |
+
|
612 |
+
15000
|
613 |
+
|
614 |
+
17500
|
615 |
+
|
616 |
+
20000
|
617 |
+
|
618 |
+
22500
|
619 |
+
|
620 |
+
25000
|
621 |
+
|
622 |
+
27500 30000
|
623 |
+
|
624 |
+
32500 35000 375
|
625 |
+
37500
|
626 |
+
|
627 |
+
Counts vs. Deconvoluted Mass (amu)
|
628 |
+
|
629 |
+
40000
|
630 |
+
|
631 |
+
42500
|
632 |
+
|
633 |
+
45000
|
634 |
+
|
635 |
+
47500
|
636 |
+
|
637 |
+
50000
|
638 |
+
|
639 |
+
52500
|
640 |
+
|
641 |
+
55000
|
642 |
+
|
643 |
+
57500
|
644 |
+
|
645 |
+
60000
|
646 |
+
|
647 |
+
</figure>
|
648 |
+
|
649 |
+
|
650 |
+
<figure>
|
651 |
+
|
652 |
+
RIC
|
653 |
+
|
654 |
+
</figure>
|
655 |
+
|
656 |
+
|
657 |
+
<!-- PageFooter="biologics" -->
|
658 |
+
<!-- PageNumber="11" -->
|
659 |
+
<!-- PageBreak -->
|
660 |
+
|
661 |
+
|
662 |
+
<figure>
|
663 |
+
</figure>
|
664 |
+
|
665 |
+
|
666 |
+
## Results: tryptic peptide map
|
667 |
+
|
668 |
+
|
669 |
+
### l N-terminal and C-terminal modifications for HC_Knob and LC
|
670 |
+
|
671 |
+
|
672 |
+
<table>
|
673 |
+
<tr>
|
674 |
+
<th colspan="5">Relative quantification by EIC (%)</th>
|
675 |
+
</tr>
|
676 |
+
<tr>
|
677 |
+
<th>AA Sequence</th>
|
678 |
+
<th>Seq Loc</th>
|
679 |
+
<th>Modification</th>
|
680 |
+
<th>T0</th>
|
681 |
+
<th>T4w37℃</th>
|
682 |
+
</tr>
|
683 |
+
<tr>
|
684 |
+
<td rowspan="2">EVOLVESGGGLVQPGGSLR</td>
|
685 |
+
<td rowspan="2">HC(1-19)</td>
|
686 |
+
<td></td>
|
687 |
+
<td>98.8</td>
|
688 |
+
<td>89.1</td>
|
689 |
+
</tr>
|
690 |
+
<tr>
|
691 |
+
<td>PyroE</td>
|
692 |
+
<td>1.2</td>
|
693 |
+
<td>10.9</td>
|
694 |
+
</tr>
|
695 |
+
<tr>
|
696 |
+
<td rowspan="3">QAVLTQPPSLSASPGASAR</td>
|
697 |
+
<td rowspan="3">LC(1-19)</td>
|
698 |
+
<td></td>
|
699 |
+
<td>3.3</td>
|
700 |
+
<td>0.0</td>
|
701 |
+
</tr>
|
702 |
+
<tr>
|
703 |
+
<td>PyroQ</td>
|
704 |
+
<td>96.7</td>
|
705 |
+
<td>99.7</td>
|
706 |
+
</tr>
|
707 |
+
<tr>
|
708 |
+
<td>N terminal Q loss</td>
|
709 |
+
<td>0.0</td>
|
710 |
+
<td>0.3</td>
|
711 |
+
</tr>
|
712 |
+
<tr>
|
713 |
+
<td rowspan="3">TVAPTECS</td>
|
714 |
+
<td rowspan="3">LC(216-223)</td>
|
715 |
+
<td></td>
|
716 |
+
<td>100.0</td>
|
717 |
+
<td>99.6</td>
|
718 |
+
</tr>
|
719 |
+
<tr>
|
720 |
+
<td>S loss</td>
|
721 |
+
<td>0.0</td>
|
722 |
+
<td>0.2</td>
|
723 |
+
</tr>
|
724 |
+
<tr>
|
725 |
+
<td>CS loss</td>
|
726 |
+
<td>0.0</td>
|
727 |
+
<td>0.2</td>
|
728 |
+
</tr>
|
729 |
+
</table>
|
730 |
+
|
731 |
+
|
732 |
+
For information purposes the following color code is applied: Values showing an increase or decrease by
|
733 |
+
between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
|
734 |
+
increase of more than 10.0% compared to T0 are in red, bold and underlined.
|
735 |
+
|
736 |
+
|
737 |
+
<figure>
|
738 |
+
|
739 |
+
RIC
|
740 |
+
|
741 |
+
</figure>
|
742 |
+
|
743 |
+
|
744 |
+
<!-- PageFooter="biologics" -->
|
745 |
+
<!-- PageNumber="12" -->
|
746 |
+
<!-- PageBreak -->
|
747 |
+
|
748 |
+
|
749 |
+
<figure>
|
750 |
+
</figure>
|
751 |
+
|
752 |
+
|
753 |
+
## Results: tryptic peptide map
|
754 |
+
|
755 |
+
|
756 |
+
### l M/W oxidations in variable parts of HC_Knob and LC
|
757 |
+
|
758 |
+
|
759 |
+
<table>
|
760 |
+
<tr>
|
761 |
+
<th colspan="5">Relative quantification by EIC (%)</th>
|
762 |
+
</tr>
|
763 |
+
<tr>
|
764 |
+
<th>AA Sequence</th>
|
765 |
+
<th>Seq Loc</th>
|
766 |
+
<th>Modification</th>
|
767 |
+
<th>T0</th>
|
768 |
+
<th>T4w37℃</th>
|
769 |
+
</tr>
|
770 |
+
<tr>
|
771 |
+
<td rowspan="2">LSCAASGFTFSSYVMSWVR</td>
|
772 |
+
<td rowspan="2">HC(20-38)</td>
|
773 |
+
<td></td>
|
774 |
+
<td>97.1</td>
|
775 |
+
<td>96.1</td>
|
776 |
+
</tr>
|
777 |
+
<tr>
|
778 |
+
<td>Oxidation</td>
|
779 |
+
<td>2.9</td>
|
780 |
+
<td>3.9</td>
|
781 |
+
</tr>
|
782 |
+
<tr>
|
783 |
+
<td rowspan="2">NTLYLQMNSLR</td>
|
784 |
+
<td rowspan="2">HC(76-86)</td>
|
785 |
+
<td></td>
|
786 |
+
<td>98.3</td>
|
787 |
+
<td>97.8</td>
|
788 |
+
</tr>
|
789 |
+
<tr>
|
790 |
+
<td>Oxidation</td>
|
791 |
+
<td>1.7</td>
|
792 |
+
<td>2.2</td>
|
793 |
+
</tr>
|
794 |
+
<tr>
|
795 |
+
<td rowspan="4">WLVDYGLGNR</td>
|
796 |
+
<td rowspan="4">HC (098-107)</td>
|
797 |
+
<td></td>
|
798 |
+
<td>100.0</td>
|
799 |
+
<td>97.2</td>
|
800 |
+
</tr>
|
801 |
+
<tr>
|
802 |
+
<td>Oxidation</td>
|
803 |
+
<td>0.0</td>
|
804 |
+
<td>0.8</td>
|
805 |
+
</tr>
|
806 |
+
<tr>
|
807 |
+
<td>Double oxidation</td>
|
808 |
+
<td>0.0</td>
|
809 |
+
<td>0.5</td>
|
810 |
+
</tr>
|
811 |
+
<tr>
|
812 |
+
<td>+ 4 (Kynurenine)</td>
|
813 |
+
<td>0.0</td>
|
814 |
+
<td>1.5</td>
|
815 |
+
</tr>
|
816 |
+
<tr>
|
817 |
+
<td rowspan="2">GSMDYWGQGTTVTVSSASTK</td>
|
818 |
+
<td rowspan="2">HC(108-127)</td>
|
819 |
+
<td></td>
|
820 |
+
<td>97.1</td>
|
821 |
+
<td>96.2</td>
|
822 |
+
</tr>
|
823 |
+
<tr>
|
824 |
+
<td>Oxidation</td>
|
825 |
+
<td>3.1</td>
|
826 |
+
<td>4.3</td>
|
827 |
+
</tr>
|
828 |
+
</table>
|
829 |
+
|
830 |
+
|
831 |
+
For information purposes the following color code is applied: Values showing an increase or decrease by
|
832 |
+
between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
|
833 |
+
increase of more than 10.0% compared to T0 are in red, bold and underlined.
|
834 |
+
|
835 |
+
|
836 |
+
<figure>
|
837 |
+
|
838 |
+
RIC
|
839 |
+
|
840 |
+
biologics
|
841 |
+
|
842 |
+
</figure>
|
843 |
+
|
844 |
+
|
845 |
+
<!-- PageNumber="13" -->
|
846 |
+
<!-- PageBreak -->
|
847 |
+
|
848 |
+
|
849 |
+
<figure>
|
850 |
+
</figure>
|
851 |
+
|
852 |
+
|
853 |
+
## Results: tryptic peptide map
|
854 |
+
|
855 |
+
|
856 |
+
### l N/Q deamidation in variable parts of HC_Knob and LC
|
857 |
+
|
858 |
+
|
859 |
+
<table>
|
860 |
+
<tr>
|
861 |
+
<th colspan="5">Relative quantification by EIC (%)</th>
|
862 |
+
</tr>
|
863 |
+
<tr>
|
864 |
+
<th>AA Sequence</th>
|
865 |
+
<th>Seq Loc</th>
|
866 |
+
<th>Modification</th>
|
867 |
+
<th>T0</th>
|
868 |
+
<th>T4w 37℃</th>
|
869 |
+
</tr>
|
870 |
+
<tr>
|
871 |
+
<td rowspan="2">GLEWVSHIQGGGITSYADSVK</td>
|
872 |
+
<td rowspan="2">HC(44-64)</td>
|
873 |
+
<td></td>
|
874 |
+
<td>99.4</td>
|
875 |
+
<td>96.3</td>
|
876 |
+
</tr>
|
877 |
+
<tr>
|
878 |
+
<td>deamidation</td>
|
879 |
+
<td>0.6</td>
|
880 |
+
<td>3.7</td>
|
881 |
+
</tr>
|
882 |
+
<tr>
|
883 |
+
<td rowspan="2">DNSKNTLYLQMNSLR*</td>
|
884 |
+
<td rowspan="2">HC(72-86)</td>
|
885 |
+
<td></td>
|
886 |
+
<td>98.6</td>
|
887 |
+
<td>98.5</td>
|
888 |
+
</tr>
|
889 |
+
<tr>
|
890 |
+
<td>deamidation</td>
|
891 |
+
<td>1.4</td>
|
892 |
+
<td>1.5</td>
|
893 |
+
</tr>
|
894 |
+
<tr>
|
895 |
+
<td rowspan="2">NTLYLQMNSLR</td>
|
896 |
+
<td rowspan="2">HC(76-86)</td>
|
897 |
+
<td></td>
|
898 |
+
<td>99.2</td>
|
899 |
+
<td>99.1</td>
|
900 |
+
</tr>
|
901 |
+
<tr>
|
902 |
+
<td>deamidation</td>
|
903 |
+
<td>0.8</td>
|
904 |
+
<td>0.9</td>
|
905 |
+
</tr>
|
906 |
+
<tr>
|
907 |
+
<td rowspan="2">WLVDYGLGNR</td>
|
908 |
+
<td rowspan="2">HC(98-107)</td>
|
909 |
+
<td></td>
|
910 |
+
<td>99.8</td>
|
911 |
+
<td>98.6</td>
|
912 |
+
</tr>
|
913 |
+
<tr>
|
914 |
+
<td>deamidation</td>
|
915 |
+
<td>0.2</td>
|
916 |
+
<td>1.4</td>
|
917 |
+
</tr>
|
918 |
+
<tr>
|
919 |
+
<td rowspan="2">DASANAGILLISGLQPEDEADYYCGTYHSNT GTYVFGGGTK</td>
|
920 |
+
<td rowspan="2">LC(73-113)</td>
|
921 |
+
<td></td>
|
922 |
+
<td>97.7</td>
|
923 |
+
<td>95.9</td>
|
924 |
+
</tr>
|
925 |
+
<tr>
|
926 |
+
<td>deamidation</td>
|
927 |
+
<td>2.3</td>
|
928 |
+
<td>4.1</td>
|
929 |
+
</tr>
|
930 |
+
</table>
|
931 |
+
|
932 |
+
*The deamidation level on the misscleaved peptide was checked as the peptide DNSK has bad retention to have a reliable
|
933 |
+
quantification. However, the misscleaved peptide has low abundance which can also lead to unreliable quantification of
|
934 |
+
modifications.
|
935 |
+
|
936 |
+
|
937 |
+
<figure>
|
938 |
+
|
939 |
+
RIC
|
940 |
+
|
941 |
+
</figure>
|
942 |
+
|
943 |
+
|
944 |
+
biologics
|
945 |
+
|
946 |
+
For information purposes the following color code is applied: Values showing an increase or decrease by
|
947 |
+
between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
|
948 |
+
increase of more than 10.0% compared to T0 are in red, bold and underlined.
|
949 |
+
|
950 |
+
<!-- PageNumber="14" -->
|
951 |
+
<!-- PageBreak -->
|
952 |
+
|
953 |
+
|
954 |
+
<figure>
|
955 |
+
</figure>
|
956 |
+
|
957 |
+
|
958 |
+
## Results: tryptic peptide map
|
959 |
+
|
960 |
+
|
961 |
+
### l Isomerization events in variable parts of HC_Knob and LC
|
962 |
+
|
963 |
+
|
964 |
+
<table>
|
965 |
+
<tr>
|
966 |
+
<th colspan="5">Relative quantification by EIC (%)</th>
|
967 |
+
</tr>
|
968 |
+
<tr>
|
969 |
+
<th>AA Sequence</th>
|
970 |
+
<th>Seq Loc</th>
|
971 |
+
<th>Modification</th>
|
972 |
+
<th>T0</th>
|
973 |
+
<th>T4w 37℃</th>
|
974 |
+
</tr>
|
975 |
+
<tr>
|
976 |
+
<td rowspan="2">WLVDYGLGNR</td>
|
977 |
+
<td rowspan="2">HC(98-107)</td>
|
978 |
+
<td></td>
|
979 |
+
<td>99.7</td>
|
980 |
+
<td>97.5</td>
|
981 |
+
</tr>
|
982 |
+
<tr>
|
983 |
+
<td>isomerization</td>
|
984 |
+
<td>0.3</td>
|
985 |
+
<td>2.5</td>
|
986 |
+
</tr>
|
987 |
+
</table>
|
988 |
+
|
989 |
+
|
990 |
+
For information purposes the following color code is applied: Values showing an increase or decrease by
|
991 |
+
between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
|
992 |
+
increase of more than 10.0% compared to T0 are in red, bold and underlined.
|
993 |
+
|
994 |
+
|
995 |
+
<figure>
|
996 |
+
|
997 |
+
RIC
|
998 |
+
|
999 |
+
</figure>
|
1000 |
+
|
1001 |
+
|
1002 |
+
biologics
|
1003 |
+
|
1004 |
+
<!-- PageNumber="15" -->
|
1005 |
+
<!-- PageBreak -->
|
1006 |
+
|
1007 |
+
|
1008 |
+
<figure>
|
1009 |
+
</figure>
|
1010 |
+
|
1011 |
+
|
1012 |
+
## Results: tryptic peptide map
|
1013 |
+
|
1014 |
+
|
1015 |
+
### l Clipping events in variable parts of HC_Knob and LC
|
1016 |
+
|
1017 |
+
|
1018 |
+
<table>
|
1019 |
+
<tr>
|
1020 |
+
<th colspan="5">Relative quantification by EIC (%)</th>
|
1021 |
+
</tr>
|
1022 |
+
<tr>
|
1023 |
+
<th>AA Sequence</th>
|
1024 |
+
<th>Seq Loc</th>
|
1025 |
+
<th>Modification</th>
|
1026 |
+
<th>T0</th>
|
1027 |
+
<th>T4w 37℃</th>
|
1028 |
+
</tr>
|
1029 |
+
<tr>
|
1030 |
+
<td>GLEWVSHIQGGGITSYADSVK</td>
|
1031 |
+
<td>HC(44-64)</td>
|
1032 |
+
<td></td>
|
1033 |
+
<td>100.0</td>
|
1034 |
+
<td>99.7</td>
|
1035 |
+
</tr>
|
1036 |
+
<tr>
|
1037 |
+
<td>GLEWVSHIQGG</td>
|
1038 |
+
<td>HC(44-54)</td>
|
1039 |
+
<td rowspan="2">GG clip</td>
|
1040 |
+
<td>0.0</td>
|
1041 |
+
<td>0.3*</td>
|
1042 |
+
</tr>
|
1043 |
+
<tr>
|
1044 |
+
<td>GITSYADSVK</td>
|
1045 |
+
<td>HC(55-64)</td>
|
1046 |
+
<td>0.0</td>
|
1047 |
+
<td>0.8*</td>
|
1048 |
+
</tr>
|
1049 |
+
</table>
|
1050 |
+
|
1051 |
+
*Due to differences in ionization efficiency between small and large peptides, the level of clipping reported here is most
|
1052 |
+
likely an overestimation.
|
1053 |
+
|
1054 |
+
|
1055 |
+
For information purposes the following color code is applied: Values showing an increase or decrease by
|
1056 |
+
between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
|
1057 |
+
increase of more than 10.0% compared to T0 are in red, bold and underlined.
|
1058 |
+
|
1059 |
+
|
1060 |
+
<figure>
|
1061 |
+
|
1062 |
+
RIC
|
1063 |
+
|
1064 |
+
</figure>
|
1065 |
+
|
1066 |
+
|
1067 |
+
<!-- PageFooter="biologics" -->
|
1068 |
+
<!-- PageNumber="16" -->
|
1069 |
+
<!-- PageBreak -->
|
1070 |
+
|
1071 |
+
|
1072 |
+
<figure>
|
1073 |
+
</figure>
|
1074 |
+
|
1075 |
+
|
1076 |
+
## Conclusions
|
1077 |
+
|
1078 |
+
l A potential unidentified clipping event may be present. Two peaks were present in the RPLC-UV-
|
1079 |
+
MS profile for which no identity was found. One peak (RT around 12 min) had a clear mass of
|
1080 |
+
13463 Da, while no mass could be retrieved for the second peak (RT around 3 min). Further
|
1081 |
+
experiments are required to find the origin of the unknown peaks.
|
1082 |
+
A less abundant clipping was found between G143G14 which falls just outside the variable region of
|
1083 |
+
HC_Knob but for sure may impact the functionality. Another clipping, this time in the variable
|
1084 |
+
region, was found between G54G55 . This clipping was confirmed via peptide mapping in the
|
1085 |
+
stressed sample in low amounts: < 1%.
|
1086 |
+
|
1087 |
+
l Cyclization of the N-terminal glutamate on the HC_knob increased up to 10.9% during temperature
|
1088 |
+
stress (both present in RPLC-UV-MS and peptide map). Cyclization of the N-terminus on the LC
|
1089 |
+
reached completion after storage for four weeks at 37℃.
|
1090 |
+
|
1091 |
+
l In addition, tryptic peptide peaks containing oxidation were found in the variable regions.
|
1092 |
+
Especially for W98 located on the HC_knob where the oxidation levels increased up to 2.8% after
|
1093 |
+
four weeks storage at 37℃. A second relevant increase in oxidation levels during the 4 weeks
|
1094 |
+
storage was found for HC(108-127): from 3.1 to 4.3%.
|
1095 |
+
|
1096 |
+
l Deamidation events on the HC_knob were limited, the largest increase was found for peptide
|
1097 |
+
HC(44-64) from 0.5% up to 3.7% over the 4 weeks storage. Another relevant increase in
|
1098 |
+
deamidation was found on LC(73-113) from 2.3 to 4.1%.
|
1099 |
+
|
1100 |
+
l In only one peptide, associated with the variable region, isomerization was observed. This in
|
1101 |
+
peptide HC(98-107): up to 2.5%.
|
1102 |
+
|
1103 |
+
|
1104 |
+
<figure>
|
1105 |
+
|
1106 |
+
RIC
|
1107 |
+
|
1108 |
+
<!-- PageFooter="biologics" -->
|
1109 |
+
|
1110 |
+
</figure>
|
1111 |
+
|
1112 |
+
|
1113 |
+
<!-- PageNumber="17" -->
|
1114 |
+
<!-- PageBreak -->
|
1115 |
+
|
1116 |
+
|
1117 |
+
<figure>
|
1118 |
+
</figure>
|
1119 |
+
|
1120 |
+
|
1121 |
+
P052_OA-02A10-GLLIAB4+LIAB11-His1_0-HIGG1-CH2-CH3-LALAPG-
|
1122 |
+
ABDEG-FJB_2024-01-26_001
|
1123 |
+
|
1124 |
+
<!-- PageBreak -->
|
1125 |
+
|
1126 |
+
|
1127 |
+
<figure>
|
1128 |
+
</figure>
|
1129 |
+
|
1130 |
+
|
1131 |
+
### Results: AA sequence
|
1132 |
+
|
1133 |
+
l AA sequence of GLLiab4+11_Heavy_Knob_LALAPG_ABDEG (MW (G0F): 50768.4
|
1134 |
+
Da)
|
1135 |
+
|
1136 |
+
EVOLVESGGGLVQPGGSLRLSCAASGFTFSSYVMSWVRQAPGKGLEWVSHIQGGGITSYADSVKGRATISRDNSKNTLYLQ
|
1137 |
+
MNSLRAEDTAVYYCARWLVDYGLGNRGSMDYWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV
|
1138 |
+
SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPEAAGGPS
|
1139 |
+
VFLFPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKC
|
1140 |
+
KVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLWCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSF
|
1141 |
+
FLYSKLTVDKSRWQQGNVFSCSVMHEALKFHYTQKSLSLSPG
|
1142 |
+
|
1143 |
+
l AA sequence of GLHis1_Light_CL1 (MW (pyroQ): 23646.4Da)
|
1144 |
+
|
1145 |
+
QAVLTQPPSLSASPGASARLTCSLSSGTIVHGYHINWYQQKAGSPPRYLLRFYSDSNKHQGSGVPSRFSGSKDASANAGILLIS
|
1146 |
+
GLQPEDEADYYCGTYHSNTGTYVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK
|
1147 |
+
AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
|
1148 |
+
|
1149 |
+
l AA sequence of CH2_CH3_Hole_LALAPG_ABDEG (MW (G0F) 26719.1 Da)
|
1150 |
+
|
1151 |
+
DKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLYITREPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV
|
1152 |
+
VSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLSCAVKGFYPSDIAVEWESNG
|
1153 |
+
QPENNYKTTPPVLDSDGSFFLVSKLTVDKSRWQQGNVFSCSVMHEALKFHYTQKSLSLSPG
|
1154 |
+
|
1155 |
+
|
1156 |
+
<figure>
|
1157 |
+
</figure>
|
1158 |
+
|
1159 |
+
|
1160 |
+
RIC
|
1161 |
+
|
1162 |
+
biologics
|
1163 |
+
|
1164 |
+
|
1165 |
+
<table>
|
1166 |
+
<tr>
|
1167 |
+
<td>Blue:</td>
|
1168 |
+
<td>VH and VL</td>
|
1169 |
+
</tr>
|
1170 |
+
<tr>
|
1171 |
+
<td>Green:</td>
|
1172 |
+
<td>N-glycosylation site 19</td>
|
1173 |
+
</tr>
|
1174 |
+
<tr>
|
1175 |
+
<td>Red:</td>
|
1176 |
+
<td>N-terminal cyclization</td>
|
1177 |
+
</tr>
|
1178 |
+
</table>
|
1179 |
+
|
1180 |
+
|
1181 |
+
<!-- PageBreak -->
|
1182 |
+
|
1183 |
+
|
1184 |
+
<figure>
|
1185 |
+
</figure>
|
1186 |
+
|
1187 |
+
|
1188 |
+
### Results: reduced RPLC-UV-MS
|
1189 |
+
|
1190 |
+
l Overlays of the UV214nm profiles P052_OA-02A10-GLLiab4+Liab11-His1_0-
|
1191 |
+
hIgG1-CH2-CH3-LALAPG-ABDEG-FJB_2024-01-26_001
|
1192 |
+
|
1193 |
+
|
1194 |
+
<figure>
|
1195 |
+
|
1196 |
+
×10 2
|
1197 |
+
|
1198 |
+
DAD1 - A:Sig=214.0,8.0 Ref=360.0,100.0 P3016_Molecule2_W0_C8_19MAR2024.d
|
1199 |
+
|
1200 |
+
HC_Knob
|
1201 |
+
|
1202 |
+
6.5
|
1203 |
+
|
1204 |
+
T0
|
1205 |
+
|
1206 |
+
6
|
1207 |
+
|
1208 |
+
T4w 37℃
|
1209 |
+
|
1210 |
+
6
|
1211 |
+
|
1212 |
+
x: Unknown fragment (13463 Da)
|
1213 |
+
|
1214 |
+
0: GG clip (G144-G452)
|
1215 |
+
|
1216 |
+
y: Intact LC without pyroQ
|
1217 |
+
|
1218 |
+
1: GG clip (G55-G452)
|
1219 |
+
|
1220 |
+
5.5
|
1221 |
+
|
1222 |
+
Hole
|
1223 |
+
|
1224 |
+
z: Intact LC (pyroQ) + LC fragments:
|
1225 |
+
|
1226 |
+
2: unknown
|
1227 |
+
|
1228 |
+
5
|
1229 |
+
|
1230 |
+
b
|
1231 |
+
|
1232 |
+
LC
|
1233 |
+
|
1234 |
+
N terminal Q loss
|
1235 |
+
|
1236 |
+
3: - 17 Da (potentially HC +
|
1237 |
+
succinimide)
|
1238 |
+
|
1239 |
+
4.5
|
1240 |
+
|
1241 |
+
a: Hydroxy-y-lactam oxidation
|
1242 |
+
|
1243 |
+
C-terminal S loss
|
1244 |
+
|
1245 |
+
z
|
1246 |
+
|
1247 |
+
b: Intact Hole
|
1248 |
+
|
1249 |
+
C-terminal CS loss
|
1250 |
+
|
1251 |
+
4: Traces of Oxidation (+32 Da)
|
1252 |
+
|
1253 |
+
4
|
1254 |
+
|
1255 |
+
c: N-terminal DK loss
|
1256 |
+
|
1257 |
+
5: Oxidation (+16Da)
|
1258 |
+
|
1259 |
+
6: Intact HC_knob
|
1260 |
+
|
1261 |
+
3.5
|
1262 |
+
|
1263 |
+
7: PyroE
|
1264 |
+
|
1265 |
+
3
|
1266 |
+
|
1267 |
+
8: DP clip (E1-D276)
|
1268 |
+
|
1269 |
+
2.5
|
1270 |
+
|
1271 |
+
2
|
1272 |
+
|
1273 |
+
1.5
|
1274 |
+
|
1275 |
+
Unknown fragment*
|
1276 |
+
|
1277 |
+
7
|
1278 |
+
|
1279 |
+
1
|
1280 |
+
|
1281 |
+
5
|
1282 |
+
|
1283 |
+
c
|
1284 |
+
|
1285 |
+
0.5
|
1286 |
+
|
1287 |
+
x
|
1288 |
+
|
1289 |
+
a
|
1290 |
+
|
1291 |
+
y
|
1292 |
+
|
1293 |
+
0
|
1294 |
+
|
1295 |
+
3
|
1296 |
+
|
1297 |
+
4
|
1298 |
+
|
1299 |
+
1
|
1300 |
+
|
1301 |
+
2
|
1302 |
+
|
1303 |
+
8
|
1304 |
+
|
1305 |
+
0
|
1306 |
+
|
1307 |
+
2
|
1308 |
+
|
1309 |
+
3
|
1310 |
+
|
1311 |
+
4
|
1312 |
+
|
1313 |
+
5
|
1314 |
+
|
1315 |
+
6
|
1316 |
+
|
1317 |
+
7
|
1318 |
+
|
1319 |
+
8
|
1320 |
+
|
1321 |
+
9
|
1322 |
+
|
1323 |
+
10
|
1324 |
+
|
1325 |
+
Response Units vs. Acquisition Time (min)
|
1326 |
+
|
1327 |
+
11
|
1328 |
+
|
1329 |
+
12
|
1330 |
+
|
1331 |
+
13
|
1332 |
+
|
1333 |
+
14
|
1334 |
+
|
1335 |
+
15
|
1336 |
+
|
1337 |
+
16
|
1338 |
+
|
1339 |
+
17
|
1340 |
+
|
1341 |
+
18
|
1342 |
+
|
1343 |
+
19
|
1344 |
+
|
1345 |
+
20
|
1346 |
+
|
1347 |
+
21
|
1348 |
+
|
1349 |
+
22
|
1350 |
+
|
1351 |
+
23
|
1352 |
+
|
1353 |
+
24
|
1354 |
+
|
1355 |
+
Color legend:
|
1356 |
+
|
1357 |
+
</figure>
|
1358 |
+
|
1359 |
+
\* No MS data for this peak (falls outside the
|
1360 |
+
measurement window)
|
1361 |
+
|
1362 |
+
Black: clear identity on RPLC-UV-MS
|
1363 |
+
|
1364 |
+
Blue: modification with clear trend visible on RPLC-UV-MS
|
1365 |
+
Blue: modification in variable region also confirmed in peptide
|
1366 |
+
mapping
|
1367 |
+
|
1368 |
+
Grey: most likely method induced modification
|
1369 |
+
|
1370 |
+
|
1371 |
+
<figure>
|
1372 |
+
</figure>
|
1373 |
+
|
1374 |
+
|
1375 |
+
RIC
|
1376 |
+
|
1377 |
+
biologics
|
1378 |
+
|
1379 |
+
<!-- PageNumber="20" -->
|
1380 |
+
<!-- PageBreak -->
|
1381 |
+
|
1382 |
+
|
1383 |
+
<figure>
|
1384 |
+
</figure>
|
1385 |
+
|
1386 |
+
|
1387 |
+
## Results: reduced RPLC-UV-MS
|
1388 |
+
|
1389 |
+
|
1390 |
+
### l Deconvoluted spectra of Hole, LC and HC_Knob (peak b, peak z and peak 6)
|
1391 |
+
|
1392 |
+
×10 6
|
1393 |
+
|
1394 |
+
+ESI Scan (rt: 9.2-10.2 min, 103 scans) Frag=200.0V P3016_Molecule2_W0_C8_19MAR2024.d Deconvoluted (Isotope Width=10.0)
|
1395 |
+
|
1396 |
+
26717.00
|
1397 |
+
|
1398 |
+
Theoretical mass Hole (G0F): 26719.1 Da
|
1399 |
+
|
1400 |
+
1
|
1401 |
+
|
1402 |
+
0.8
|
1403 |
+
|
1404 |
+
0.6
|
1405 |
+
|
1406 |
+
0.4
|
1407 |
+
|
1408 |
+
0.2
|
1409 |
+
|
1410 |
+
0
|
1411 |
+
|
1412 |
+
21343.73
|
1413 |
+
|
1414 |
+
32956.97
|
1415 |
+
|
1416 |
+
+ESI Scan (rt: 12.8-13.7 min, 91 scans) Frag=200.0V P3016_Molecule2_W0_C8_19MAR2024.d Deconvoluted (Isotope Width=10.0)
|
1417 |
+
|
1418 |
+
x10 6
|
1419 |
+
|
1420 |
+
1.5
|
1421 |
+
|
1422 |
+
1.25
|
1423 |
+
|
1424 |
+
1
|
1425 |
+
|
1426 |
+
0.75
|
1427 |
+
|
1428 |
+
0.5
|
1429 |
+
|
1430 |
+
0.25
|
1431 |
+
|
1432 |
+
0
|
1433 |
+
|
1434 |
+
x10 5
|
1435 |
+
|
1436 |
+
17938.20
|
1437 |
+
|
1438 |
+
25795.40
|
1439 |
+
|
1440 |
+
30285.87
|
1441 |
+
|
1442 |
+
23644.57
|
1443 |
+
|
1444 |
+
Theoretical mass LC (pyroQ): 23646.43 Da
|
1445 |
+
|
1446 |
+
+ESI Scan (rt: 16.5-21.2 min, 467 scans) Frag=200.0V P3016_Molecule2_W0_C8_19MAR2024.d Deconvoluted (Isotope Width=14.1)
|
1447 |
+
|
1448 |
+
|
1449 |
+
<figure>
|
1450 |
+
|
1451 |
+
1
|
1452 |
+
|
1453 |
+
Theoretical mass HC_knob (G0F): 50768.4 Da
|
1454 |
+
|
1455 |
+
50764.08
|
1456 |
+
|
1457 |
+
0.8
|
1458 |
+
|
1459 |
+
0.6
|
1460 |
+
|
1461 |
+
0.4
|
1462 |
+
|
1463 |
+
0.2
|
1464 |
+
|
1465 |
+
0
|
1466 |
+
|
1467 |
+
43849.21
|
1468 |
+
|
1469 |
+
53430.56
|
1470 |
+
|
1471 |
+
58466.31
|
1472 |
+
|
1473 |
+
10000
|
1474 |
+
|
1475 |
+
12500
|
1476 |
+
|
1477 |
+
15000
|
1478 |
+
|
1479 |
+
17500
|
1480 |
+
|
1481 |
+
20000
|
1482 |
+
|
1483 |
+
22500
|
1484 |
+
00 25000 2750
|
1485 |
+
|
1486 |
+
30000 32500 35
|
1487 |
+
35000 37500
|
1488 |
+
|
1489 |
+
Counts vs. Deconvoluted Mass (amu)
|
1490 |
+
|
1491 |
+
42500
|
1492 |
+
|
1493 |
+
45000
|
1494 |
+
|
1495 |
+
47500
|
1496 |
+
50000
|
1497 |
+
|
1498 |
+
52500
|
1499 |
+
|
1500 |
+
55000
|
1501 |
+
|
1502 |
+
57500
|
1503 |
+
|
1504 |
+
60000
|
1505 |
+
|
1506 |
+
</figure>
|
1507 |
+
|
1508 |
+
|
1509 |
+
<figure>
|
1510 |
+
|
1511 |
+
RIC
|
1512 |
+
|
1513 |
+
</figure>
|
1514 |
+
|
1515 |
+
|
1516 |
+
<!-- PageFooter="biologics" -->
|
1517 |
+
<!-- PageNumber="21" -->
|
1518 |
+
<!-- PageBreak -->
|
1519 |
+
|
1520 |
+
|
1521 |
+
<figure>
|
1522 |
+
</figure>
|
1523 |
+
|
1524 |
+
|
1525 |
+
## Results: tryptic peptide map
|
1526 |
+
|
1527 |
+
|
1528 |
+
### l N-terminal and C-terminal modifications for HC_Knob and LC
|
1529 |
+
|
1530 |
+
|
1531 |
+
<table>
|
1532 |
+
<tr>
|
1533 |
+
<th colspan="5">Relative quantification by EIC (%)</th>
|
1534 |
+
</tr>
|
1535 |
+
<tr>
|
1536 |
+
<th>AA Sequence</th>
|
1537 |
+
<th>Seq Loc</th>
|
1538 |
+
<th>Modification</th>
|
1539 |
+
<th>T0</th>
|
1540 |
+
<th>T4w37℃</th>
|
1541 |
+
</tr>
|
1542 |
+
<tr>
|
1543 |
+
<td rowspan="2">EVOLVESGGGLVQPGGSLR</td>
|
1544 |
+
<td rowspan="2">HC(1-19)</td>
|
1545 |
+
<td></td>
|
1546 |
+
<td>98.6</td>
|
1547 |
+
<td>88.0</td>
|
1548 |
+
</tr>
|
1549 |
+
<tr>
|
1550 |
+
<td>PyroE</td>
|
1551 |
+
<td>1.4</td>
|
1552 |
+
<td>12.0</td>
|
1553 |
+
</tr>
|
1554 |
+
<tr>
|
1555 |
+
<td rowspan="3">QAVLTQPPSLSASPGASAR</td>
|
1556 |
+
<td rowspan="3">LC(1-19)</td>
|
1557 |
+
<td></td>
|
1558 |
+
<td>3.5</td>
|
1559 |
+
<td>0</td>
|
1560 |
+
</tr>
|
1561 |
+
<tr>
|
1562 |
+
<td>PyroQ</td>
|
1563 |
+
<td>96.5</td>
|
1564 |
+
<td>99.8</td>
|
1565 |
+
</tr>
|
1566 |
+
<tr>
|
1567 |
+
<td>N terminal Q loss</td>
|
1568 |
+
<td>0.0</td>
|
1569 |
+
<td>0.2</td>
|
1570 |
+
</tr>
|
1571 |
+
<tr>
|
1572 |
+
<td rowspan="3">TVAPTECS</td>
|
1573 |
+
<td rowspan="3">LC(216-223)</td>
|
1574 |
+
<td></td>
|
1575 |
+
<td>100.0</td>
|
1576 |
+
<td>99.6</td>
|
1577 |
+
</tr>
|
1578 |
+
<tr>
|
1579 |
+
<td>S loss</td>
|
1580 |
+
<td>0.0</td>
|
1581 |
+
<td>0.2</td>
|
1582 |
+
</tr>
|
1583 |
+
<tr>
|
1584 |
+
<td>CS loss</td>
|
1585 |
+
<td>0.0</td>
|
1586 |
+
<td>0.2</td>
|
1587 |
+
</tr>
|
1588 |
+
</table>
|
1589 |
+
|
1590 |
+
|
1591 |
+
For information purposes the following color code is applied: Values showing an increase or decrease by
|
1592 |
+
between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
|
1593 |
+
increase of more than 10.0% compared to T0 are in red, bold and underlined.
|
1594 |
+
|
1595 |
+
|
1596 |
+
<figure>
|
1597 |
+
|
1598 |
+
RIC
|
1599 |
+
|
1600 |
+
</figure>
|
1601 |
+
|
1602 |
+
|
1603 |
+
<!-- PageFooter="biologics" -->
|
1604 |
+
<!-- PageNumber="22" -->
|
1605 |
+
<!-- PageBreak -->
|
1606 |
+
|
1607 |
+
|
1608 |
+
<figure>
|
1609 |
+
</figure>
|
1610 |
+
|
1611 |
+
|
1612 |
+
## Results: tryptic peptide map
|
1613 |
+
|
1614 |
+
|
1615 |
+
### l M/W oxidations in variable parts of HC_Knob and LC
|
1616 |
+
|
1617 |
+
|
1618 |
+
<table>
|
1619 |
+
<tr>
|
1620 |
+
<th colspan="5">Relative quantification by EIC (%)</th>
|
1621 |
+
</tr>
|
1622 |
+
<tr>
|
1623 |
+
<th>AA Sequence</th>
|
1624 |
+
<th>Seq Loc</th>
|
1625 |
+
<th>Modification</th>
|
1626 |
+
<th>T0</th>
|
1627 |
+
<th>T4w37℃</th>
|
1628 |
+
</tr>
|
1629 |
+
<tr>
|
1630 |
+
<td rowspan="2">LSCAASGFTFSSYVMSWVR</td>
|
1631 |
+
<td rowspan="2">HC(20-38)</td>
|
1632 |
+
<td></td>
|
1633 |
+
<td>97.1</td>
|
1634 |
+
<td>95.9</td>
|
1635 |
+
</tr>
|
1636 |
+
<tr>
|
1637 |
+
<td>Oxidation</td>
|
1638 |
+
<td>2.9</td>
|
1639 |
+
<td>4.1</td>
|
1640 |
+
</tr>
|
1641 |
+
<tr>
|
1642 |
+
<td rowspan="2">NTLYLQMNSLR</td>
|
1643 |
+
<td rowspan="2">HC(76-86)</td>
|
1644 |
+
<td></td>
|
1645 |
+
<td>98.4</td>
|
1646 |
+
<td>97.8</td>
|
1647 |
+
</tr>
|
1648 |
+
<tr>
|
1649 |
+
<td>Oxidation</td>
|
1650 |
+
<td>1.6</td>
|
1651 |
+
<td>2.2</td>
|
1652 |
+
</tr>
|
1653 |
+
<tr>
|
1654 |
+
<td rowspan="4">WLVDYGLGNR</td>
|
1655 |
+
<td rowspan="4">HC (098-107)</td>
|
1656 |
+
<td></td>
|
1657 |
+
<td>100.0</td>
|
1658 |
+
<td>93.2</td>
|
1659 |
+
</tr>
|
1660 |
+
<tr>
|
1661 |
+
<td>Oxidation</td>
|
1662 |
+
<td>0.0</td>
|
1663 |
+
<td>2.2</td>
|
1664 |
+
</tr>
|
1665 |
+
<tr>
|
1666 |
+
<td>Double oxidation</td>
|
1667 |
+
<td>0.0</td>
|
1668 |
+
<td>2.0</td>
|
1669 |
+
</tr>
|
1670 |
+
<tr>
|
1671 |
+
<td>+ 4 (Kynurenine)</td>
|
1672 |
+
<td>0.0</td>
|
1673 |
+
<td>2.7</td>
|
1674 |
+
</tr>
|
1675 |
+
<tr>
|
1676 |
+
<td rowspan="2">GSMDYWGQGTTVTVSSASTK</td>
|
1677 |
+
<td rowspan="2">HC(108-127)</td>
|
1678 |
+
<td></td>
|
1679 |
+
<td>97.1</td>
|
1680 |
+
<td>96.2</td>
|
1681 |
+
</tr>
|
1682 |
+
<tr>
|
1683 |
+
<td>Oxidation</td>
|
1684 |
+
<td>2.9</td>
|
1685 |
+
<td>3.8</td>
|
1686 |
+
</tr>
|
1687 |
+
</table>
|
1688 |
+
|
1689 |
+
|
1690 |
+
For information purposes the following color code is applied: Values showing an increase or decrease by
|
1691 |
+
between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
|
1692 |
+
increase of more than 10.0% compared to T0 are in red, bold and underlined.
|
1693 |
+
|
1694 |
+
|
1695 |
+
<figure>
|
1696 |
+
|
1697 |
+
RIC
|
1698 |
+
|
1699 |
+
biologics
|
1700 |
+
|
1701 |
+
</figure>
|
1702 |
+
|
1703 |
+
|
1704 |
+
<!-- PageNumber="23" -->
|
1705 |
+
<!-- PageBreak -->
|
1706 |
+
|
1707 |
+
|
1708 |
+
<figure>
|
1709 |
+
</figure>
|
1710 |
+
|
1711 |
+
|
1712 |
+
## Results: tryptic peptide map
|
1713 |
+
|
1714 |
+
|
1715 |
+
### l
|
1716 |
+
|
1717 |
+
|
1718 |
+
#### N/Q deamidation in variable parts of HC_Knob and LC
|
1719 |
+
|
1720 |
+
|
1721 |
+
<table>
|
1722 |
+
<tr>
|
1723 |
+
<th colspan="5">Relative quantification by EIC (%)</th>
|
1724 |
+
</tr>
|
1725 |
+
<tr>
|
1726 |
+
<th>AA Sequence</th>
|
1727 |
+
<th>Seq Loc</th>
|
1728 |
+
<th>Modification</th>
|
1729 |
+
<th>T0</th>
|
1730 |
+
<th>T4w 37℃</th>
|
1731 |
+
</tr>
|
1732 |
+
<tr>
|
1733 |
+
<td rowspan="2">GLEWVSHIQGGGITSYADSVK</td>
|
1734 |
+
<td rowspan="2">HC(44-64)</td>
|
1735 |
+
<td></td>
|
1736 |
+
<td>99.4</td>
|
1737 |
+
<td>96.3</td>
|
1738 |
+
</tr>
|
1739 |
+
<tr>
|
1740 |
+
<td>deamidation</td>
|
1741 |
+
<td>0.6</td>
|
1742 |
+
<td>3.7</td>
|
1743 |
+
</tr>
|
1744 |
+
<tr>
|
1745 |
+
<td rowspan="2">DNSKNTLYLQMNSLR*</td>
|
1746 |
+
<td rowspan="2">HC(72-86)</td>
|
1747 |
+
<td></td>
|
1748 |
+
<td>98.1</td>
|
1749 |
+
<td>98.5</td>
|
1750 |
+
</tr>
|
1751 |
+
<tr>
|
1752 |
+
<td>deamidation</td>
|
1753 |
+
<td>1.9</td>
|
1754 |
+
<td>1.5</td>
|
1755 |
+
</tr>
|
1756 |
+
<tr>
|
1757 |
+
<td rowspan="2">NTLYLQMNSLR</td>
|
1758 |
+
<td rowspan="2">HC(76-86)</td>
|
1759 |
+
<td></td>
|
1760 |
+
<td>99.7</td>
|
1761 |
+
<td>99.0</td>
|
1762 |
+
</tr>
|
1763 |
+
<tr>
|
1764 |
+
<td>deamidation</td>
|
1765 |
+
<td>0.3</td>
|
1766 |
+
<td>1.0</td>
|
1767 |
+
</tr>
|
1768 |
+
<tr>
|
1769 |
+
<td rowspan="2">WLVDYGLGNR</td>
|
1770 |
+
<td rowspan="2">HC(98-107)</td>
|
1771 |
+
<td></td>
|
1772 |
+
<td>99.8</td>
|
1773 |
+
<td>99.0</td>
|
1774 |
+
</tr>
|
1775 |
+
<tr>
|
1776 |
+
<td>deamidation</td>
|
1777 |
+
<td>0.2</td>
|
1778 |
+
<td>1.0</td>
|
1779 |
+
</tr>
|
1780 |
+
<tr>
|
1781 |
+
<td rowspan="2">DASANAGILLISGLQPEDEADYYCGTYHSNT GTYVFGGGTK</td>
|
1782 |
+
<td rowspan="2">LC(73-113)</td>
|
1783 |
+
<td></td>
|
1784 |
+
<td>97.5</td>
|
1785 |
+
<td>95.4</td>
|
1786 |
+
</tr>
|
1787 |
+
<tr>
|
1788 |
+
<td>deamidation</td>
|
1789 |
+
<td>2.5</td>
|
1790 |
+
<td>4.6</td>
|
1791 |
+
</tr>
|
1792 |
+
</table>
|
1793 |
+
|
1794 |
+
*The deamidation level on the misscleaved peptide was checked as the peptide DNSK has bad retention to have a reliable
|
1795 |
+
quantification. However, the misscleaved peptide has low abundance which can also lead to unreliable quantification of
|
1796 |
+
modifications
|
1797 |
+
|
1798 |
+
|
1799 |
+
<figure>
|
1800 |
+
|
1801 |
+
RIC
|
1802 |
+
|
1803 |
+
</figure>
|
1804 |
+
|
1805 |
+
|
1806 |
+
biologics
|
1807 |
+
|
1808 |
+
For information purposes the following color code is applied: Values showing an increase or decrease by
|
1809 |
+
between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
|
1810 |
+
increase of more than 10.0% compared to T0 are in red, bold and underlined.
|
1811 |
+
|
1812 |
+
<!-- PageNumber="24" -->
|
1813 |
+
<!-- PageBreak -->
|
1814 |
+
|
1815 |
+
|
1816 |
+
<figure>
|
1817 |
+
</figure>
|
1818 |
+
|
1819 |
+
|
1820 |
+
## Results: tryptic peptide map
|
1821 |
+
|
1822 |
+
|
1823 |
+
### l Isomerization events in variable parts of HC_Knob and LC
|
1824 |
+
|
1825 |
+
|
1826 |
+
<table>
|
1827 |
+
<tr>
|
1828 |
+
<th colspan="5">Relative quantification by EIC (%)</th>
|
1829 |
+
</tr>
|
1830 |
+
<tr>
|
1831 |
+
<th>AA Sequence</th>
|
1832 |
+
<th>Seq Loc</th>
|
1833 |
+
<th>Modification</th>
|
1834 |
+
<th>T0</th>
|
1835 |
+
<th>T4w 37℃</th>
|
1836 |
+
</tr>
|
1837 |
+
<tr>
|
1838 |
+
<td rowspan="2">WLVDYGLGNR</td>
|
1839 |
+
<td rowspan="2">HC(98-107)</td>
|
1840 |
+
<td></td>
|
1841 |
+
<td>99.5</td>
|
1842 |
+
<td>95.1</td>
|
1843 |
+
</tr>
|
1844 |
+
<tr>
|
1845 |
+
<td>isomerization</td>
|
1846 |
+
<td>0.5</td>
|
1847 |
+
<td>4.9</td>
|
1848 |
+
</tr>
|
1849 |
+
</table>
|
1850 |
+
|
1851 |
+
|
1852 |
+
For information purposes the following color code is applied: Values showing an increase or decrease by
|
1853 |
+
between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
|
1854 |
+
increase of more than 10.0% compared to T0 are in red, bold and underlined.
|
1855 |
+
|
1856 |
+
|
1857 |
+
<figure>
|
1858 |
+
|
1859 |
+
RIC
|
1860 |
+
|
1861 |
+
</figure>
|
1862 |
+
|
1863 |
+
|
1864 |
+
biologics
|
1865 |
+
|
1866 |
+
<!-- PageNumber="25" -->
|
1867 |
+
<!-- PageBreak -->
|
1868 |
+
|
1869 |
+
|
1870 |
+
<figure>
|
1871 |
+
</figure>
|
1872 |
+
|
1873 |
+
|
1874 |
+
## Results: tryptic peptide map
|
1875 |
+
|
1876 |
+
|
1877 |
+
### l Clipping events in variable parts of HC_Knob and LC
|
1878 |
+
|
1879 |
+
|
1880 |
+
<table>
|
1881 |
+
<tr>
|
1882 |
+
<th colspan="5">Relative quantification by EIC (%)</th>
|
1883 |
+
</tr>
|
1884 |
+
<tr>
|
1885 |
+
<th>AA Sequence</th>
|
1886 |
+
<th>Seq Loc</th>
|
1887 |
+
<th>Modification</th>
|
1888 |
+
<th>T0</th>
|
1889 |
+
<th>T4w 37℃</th>
|
1890 |
+
</tr>
|
1891 |
+
<tr>
|
1892 |
+
<td>GLEWVSHIQGGGITSYADSVK</td>
|
1893 |
+
<td>HC(44-64)</td>
|
1894 |
+
<td></td>
|
1895 |
+
<td>100.0</td>
|
1896 |
+
<td>99.7</td>
|
1897 |
+
</tr>
|
1898 |
+
<tr>
|
1899 |
+
<td>GLEWVSHIQGG</td>
|
1900 |
+
<td>HC(44-54)</td>
|
1901 |
+
<td rowspan="2">GG clip</td>
|
1902 |
+
<td>0.0</td>
|
1903 |
+
<td>0.3*</td>
|
1904 |
+
</tr>
|
1905 |
+
<tr>
|
1906 |
+
<td>GITSYADSVK</td>
|
1907 |
+
<td>HC(55-64)</td>
|
1908 |
+
<td>0.0</td>
|
1909 |
+
<td>0.8*</td>
|
1910 |
+
</tr>
|
1911 |
+
</table>
|
1912 |
+
|
1913 |
+
*Due to differences in ionization efficiency between small and large peptides, the level of clipping reported here is most
|
1914 |
+
likely an overestimation.
|
1915 |
+
|
1916 |
+
|
1917 |
+
For information purposes the following color code is applied: Values showing an increase or decrease by
|
1918 |
+
between 1.0% to 10.0% compared to T0 sample are in blue and underlined, whereas values showing an
|
1919 |
+
increase of more than 10.0% compared to T0 are in red, bold and underlined.
|
1920 |
+
|
1921 |
+
|
1922 |
+
<figure>
|
1923 |
+
|
1924 |
+
RIC
|
1925 |
+
|
1926 |
+
</figure>
|
1927 |
+
|
1928 |
+
|
1929 |
+
<!-- PageFooter="biologics" -->
|
1930 |
+
<!-- PageNumber="26" -->
|
1931 |
+
<!-- PageBreak -->
|
1932 |
+
|
1933 |
+
|
1934 |
+
<figure>
|
1935 |
+
</figure>
|
1936 |
+
|
1937 |
+
|
1938 |
+
## Conclusions
|
1939 |
+
|
1940 |
+
l A potential unidentified clipping event may be present. Two peaks were present in the RPLC-UV-
|
1941 |
+
MS profile for which no identity was found. One peak (RT around 12 min) had a clear mass of
|
1942 |
+
13463 Da, while no mass could be retrieved for the second peak (RT around 3 min). Further
|
1943 |
+
experiments are required to find the origin of the unknown peaks.
|
1944 |
+
A less abundant clipping was found between G143G14 which falls just outside the variable region of
|
1945 |
+
HC_Knob but for sure may impact the functionality. Another clipping, this time in the variable
|
1946 |
+
region, was found between G54G55 . This clipping was confirmed via peptide mapping in the
|
1947 |
+
stressed sample in low amounts: < 1%.
|
1948 |
+
|
1949 |
+
l Cyclization of the N-terminal glutamate on the HC_knob increased up to 12.0% during temperature
|
1950 |
+
stress (both present in RPLC-UV-MS and peptide map). Cyclization of the N-terminus on the LC
|
1951 |
+
reached completion after storage for four weeks at 37℃.
|
1952 |
+
|
1953 |
+
l In addition, tryptic peptide peaks containing oxidation were found in the variable regions.
|
1954 |
+
Especially for Wgg located on the HC_knob where the oxidation levels increased up to 6.9% after
|
1955 |
+
four weeks storage at 37℃. A second relevant increase in oxidation levels during the 4 weeks
|
1956 |
+
storage was found for HC(20-38): from 2.9 to 4.1%.
|
1957 |
+
|
1958 |
+
l Deamidation events on the HC_knob were limited, the largest increase was found for peptide
|
1959 |
+
HC(44-64) from 0.6% up to 3.7% over the 4 weeks storage. Another relevant increase in
|
1960 |
+
deamidation was found on LC(73-113) from 2.5 to 4.6%.
|
1961 |
+
|
1962 |
+
l In only one peptide, associated with the variable region, isomerization was observed. This in
|
1963 |
+
peptide HC(98-107): up to 4.9%.
|
1964 |
+
|
1965 |
+
|
1966 |
+
<figure>
|
1967 |
+
|
1968 |
+
RIC
|
1969 |
+
|
1970 |
+
<!-- PageFooter="biologics" -->
|
1971 |
+
|
1972 |
+
</figure>
|
1973 |
+
|
1974 |
+
|
1975 |
+
<!-- PageNumber="27" -->
|
1976 |
+
<!-- PageBreak -->
|
1977 |
+
|
1978 |
+
|
1979 |
+
<figure>
|
1980 |
+
</figure>
|
1981 |
+
|
1982 |
+
|
1983 |
+
### Signature section RIC
|
1984 |
+
|
1985 |
+
|
1986 |
+
#### Author
|
1987 |
+
|
1988 |
+
|
1989 |
+
<table>
|
1990 |
+
<tr>
|
1991 |
+
<th>Nathan Cardon</th>
|
1992 |
+
<th>Date:</th>
|
1993 |
+
<th>14-MAY-2024</th>
|
1994 |
+
</tr>
|
1995 |
+
<tr>
|
1996 |
+
<td>Sr Research Associate | Project Responsible</td>
|
1997 |
+
<td>Signature:</td>
|
1998 |
+
<td></td>
|
1999 |
+
</tr>
|
2000 |
+
<tr>
|
2001 |
+
<td colspan="3">Reviewer</td>
|
2002 |
+
</tr>
|
2003 |
+
<tr>
|
2004 |
+
<td>Gianni Vandenborre Ph.D.</td>
|
2005 |
+
<td>Date:</td>
|
2006 |
+
<td>14-MAY-2024</td>
|
2007 |
+
</tr>
|
2008 |
+
<tr>
|
2009 |
+
<td>Sr Scientist</td>
|
2010 |
+
<td>Signature:</td>
|
2011 |
+
<td></td>
|
2012 |
+
</tr>
|
2013 |
+
<tr>
|
2014 |
+
<td>Mabelle Meersseman</td>
|
2015 |
+
<td>Date:</td>
|
2016 |
+
<td>15-MAY-2024</td>
|
2017 |
+
</tr>
|
2018 |
+
<tr>
|
2019 |
+
<td>Group Leader</td>
|
2020 |
+
<td>Signature:</td>
|
2021 |
+
<td></td>
|
2022 |
+
</tr>
|
2023 |
+
<tr>
|
2024 |
+
<td colspan="3">Approver</td>
|
2025 |
+
</tr>
|
2026 |
+
<tr>
|
2027 |
+
<td>Koen Sandra Ph.D.</td>
|
2028 |
+
<td>Date:</td>
|
2029 |
+
<td>15-MAY-2024</td>
|
2030 |
+
</tr>
|
2031 |
+
<tr>
|
2032 |
+
<td>CEO</td>
|
2033 |
+
<td>Signature:</td>
|
2034 |
+
<td>Koen Sandra</td>
|
2035 |
+
</tr>
|
2036 |
+
</table>
|
2037 |
+
|
2038 |
+
|
2039 |
+
<figure>
|
2040 |
+
|
2041 |
+
RIC
|
2042 |
+
|
2043 |
+
</figure>
|
2044 |
+
|
2045 |
+
|
2046 |
+
<!-- PageFooter="biologics" -->
|
2047 |
+
<!-- PageNumber="28" -->
|
2048 |
+
<!-- PageBreak -->
|
2049 |
+
|
2050 |
+
|
2051 |
+
<figure>
|
2052 |
+
</figure>
|
2053 |
+
|
2054 |
+
|
2055 |
+
# Version control
|
2056 |
+
|
2057 |
+
|
2058 |
+
<table>
|
2059 |
+
<tr>
|
2060 |
+
<th>Version</th>
|
2061 |
+
<th>Date of issue</th>
|
2062 |
+
<th>Reason for version update</th>
|
2063 |
+
</tr>
|
2064 |
+
<tr>
|
2065 |
+
<td>01</td>
|
2066 |
+
<td>15-MAY-2024</td>
|
2067 |
+
<td>First issue</td>
|
2068 |
+
</tr>
|
2069 |
+
<tr>
|
2070 |
+
<td></td>
|
2071 |
+
<td></td>
|
2072 |
+
<td></td>
|
2073 |
+
</tr>
|
2074 |
+
<tr>
|
2075 |
+
<td></td>
|
2076 |
+
<td></td>
|
2077 |
+
<td></td>
|
2078 |
+
</tr>
|
2079 |
+
</table>
|
2080 |
+
|
2081 |
+
|
2082 |
+
15-MAY-2024
|
2083 |
+
|
2084 |
+
Obo Jaussens
|
2085 |
+
|
2086 |
+
|
2087 |
+
<figure>
|
2088 |
+
|
2089 |
+
RIC
|
2090 |
+
|
2091 |
+
</figure>
|
2092 |
+
|
2093 |
+
|
2094 |
+
<!-- PageFooter="biologics" -->
|
2095 |
+
<!-- PageNumber="29" -->
|
2096 |
+
<!-- PageBreak -->
|
2097 |
+
|
2098 |
+
|
2099 |
+
<figure>
|
2100 |
+
|
2101 |
+
RIC
|
2102 |
+
|
2103 |
+
biologics
|
2104 |
+
|
2105 |
+
</figure>
|
2106 |
+
|
2107 |
+
|
2108 |
+
YOUR MOLECULE. OUR ANALYTICS. NO SECRETS.
|
2109 |
+
|
2110 |
+
<!-- PageFooter="www.RIC-biologics.com" -->
|
src/agents/__pycache__/field_mapper_agent.cpython-312.pyc
CHANGED
Binary files a/src/agents/__pycache__/field_mapper_agent.cpython-312.pyc and b/src/agents/__pycache__/field_mapper_agent.cpython-312.pyc differ
|
|
src/agents/field_mapper_agent.py
CHANGED
@@ -299,56 +299,15 @@ class FieldMapperAgent(BaseAgent):
|
|
299 |
|
300 |
self.logger.info(f"Processing field: {field}")
|
301 |
self.logger.info(f"Using document context: {ctx['document_context']}")
|
302 |
-
|
303 |
-
#
|
304 |
-
|
305 |
-
|
306 |
-
|
307 |
-
|
308 |
-
|
309 |
-
|
310 |
-
|
311 |
-
# First try to find which marker is used
|
312 |
-
used_marker = None
|
313 |
-
for marker in page_markers:
|
314 |
-
if marker in text:
|
315 |
-
used_marker = marker
|
316 |
-
self.logger.info(f"Found page marker: {marker}")
|
317 |
-
break
|
318 |
-
|
319 |
-
if not used_marker:
|
320 |
-
self.logger.warning("No page markers found, falling back to double newline")
|
321 |
-
used_marker = '\n\n'
|
322 |
-
|
323 |
-
# Split the text
|
324 |
-
if used_marker == '\n\n':
|
325 |
-
pages = [p.strip() for p in text.split(used_marker) if p.strip()]
|
326 |
-
else:
|
327 |
-
pages = []
|
328 |
-
current_page = []
|
329 |
-
|
330 |
-
for line in text.split('\n'):
|
331 |
-
if used_marker in line:
|
332 |
-
if current_page:
|
333 |
-
pages.append('\n'.join(current_page))
|
334 |
-
current_page = [line]
|
335 |
-
else:
|
336 |
-
current_page.append(line)
|
337 |
-
|
338 |
-
if current_page:
|
339 |
-
pages.append('\n'.join(current_page))
|
340 |
-
|
341 |
-
self.logger.info(f"Split document into {len(pages)} pages")
|
342 |
-
|
343 |
-
# Process each page
|
344 |
-
for i, page in enumerate(pages, 1):
|
345 |
-
self.logger.info(f"Processing page {i}/{len(pages)}")
|
346 |
-
value = self._extract_field_value_from_page(field, page, ctx["document_context"])
|
347 |
-
if value:
|
348 |
-
return value
|
349 |
-
|
350 |
-
# If no value found in any page, try the search-based approach as fallback
|
351 |
-
self.logger.warning("No value found in page-by-page analysis, falling back to search-based approach")
|
352 |
|
353 |
if index and "embeddings" in index:
|
354 |
self.logger.info("Using semantic search with embeddings")
|
|
|
299 |
|
300 |
self.logger.info(f"Processing field: {field}")
|
301 |
self.logger.info(f"Using document context: {ctx['document_context']}")
|
302 |
+
|
303 |
+
# Process entire document at once
|
304 |
+
self.logger.info("Processing entire document...")
|
305 |
+
value = self._extract_field_value_from_page(field, text, ctx["document_context"])
|
306 |
+
if value:
|
307 |
+
return value
|
308 |
+
|
309 |
+
# If no value found, try the search-based approach as fallback
|
310 |
+
self.logger.warning("No value found in document analysis, falling back to search-based approach")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
311 |
|
312 |
if index and "embeddings" in index:
|
313 |
self.logger.info("Using semantic search with embeddings")
|
src/services/__pycache__/azure_di_service.cpython-312.pyc
CHANGED
Binary files a/src/services/__pycache__/azure_di_service.cpython-312.pyc and b/src/services/__pycache__/azure_di_service.cpython-312.pyc differ
|
|
src/services/azure_di_service.py
CHANGED
@@ -1,6 +1,8 @@
|
|
1 |
"""Real wrapper goes here – currently not used by stub agents."""
|
2 |
import logging
|
3 |
import json
|
|
|
|
|
4 |
from azure.ai.documentintelligence import DocumentIntelligenceClient
|
5 |
from azure.ai.documentintelligence.models import DocumentContentFormat
|
6 |
from azure.core.credentials import AzureKeyCredential
|
@@ -10,6 +12,8 @@ class AzureDIService:
|
|
10 |
def __init__(self, endpoint: str, key: str):
|
11 |
self.client = DocumentIntelligenceClient(endpoint=endpoint, credential=AzureKeyCredential(key))
|
12 |
self.logger = logging.getLogger(__name__)
|
|
|
|
|
13 |
|
14 |
def extract_tables(self, pdf_bytes: bytes):
|
15 |
try:
|
@@ -35,6 +39,13 @@ class AzureDIService:
|
|
35 |
if hasattr(result, "content"):
|
36 |
self.logger.info(f"Content type: {type(result.content)}")
|
37 |
self.logger.info(f"Content preview: {result.content[:500]}")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
38 |
|
39 |
# Check if tables exist and log their structure
|
40 |
if hasattr(result, "tables"):
|
|
|
1 |
"""Real wrapper goes here – currently not used by stub agents."""
|
2 |
import logging
|
3 |
import json
|
4 |
+
from datetime import datetime
|
5 |
+
from pathlib import Path
|
6 |
from azure.ai.documentintelligence import DocumentIntelligenceClient
|
7 |
from azure.ai.documentintelligence.models import DocumentContentFormat
|
8 |
from azure.core.credentials import AzureKeyCredential
|
|
|
12 |
def __init__(self, endpoint: str, key: str):
|
13 |
self.client = DocumentIntelligenceClient(endpoint=endpoint, credential=AzureKeyCredential(key))
|
14 |
self.logger = logging.getLogger(__name__)
|
15 |
+
self.log_dir = Path("logs/di_content")
|
16 |
+
self.log_dir.mkdir(parents=True, exist_ok=True)
|
17 |
|
18 |
def extract_tables(self, pdf_bytes: bytes):
|
19 |
try:
|
|
|
39 |
if hasattr(result, "content"):
|
40 |
self.logger.info(f"Content type: {type(result.content)}")
|
41 |
self.logger.info(f"Content preview: {result.content[:500]}")
|
42 |
+
|
43 |
+
# Save content to timestamped file
|
44 |
+
timestamp = datetime.now().strftime("%Y%m%d_%H%M%S")
|
45 |
+
log_file = self.log_dir / f"di_content_{timestamp}.txt"
|
46 |
+
with open(log_file, "w", encoding="utf-8") as f:
|
47 |
+
f.write(result.content)
|
48 |
+
self.logger.info(f"Saved DI content to {log_file}")
|
49 |
|
50 |
# Check if tables exist and log their structure
|
51 |
if hasattr(result, "tables"):
|