#!/bin/bash -l CHEMPROP_ENV=$1 CHEMPROP_PATH=$2 if [ -z "${CHEMPROP_ENV}" ] || [ -z "${CHEMPROP_PATH}" ]; then echo "Usage: regenerate_models.sh " exit 1 fi conda activate $CHEMPROP_ENV # test_cli_classification_mol rm -rf test_cli_classification_mol chemprop train -i $CHEMPROP_PATH/tests/data/classification/mol.csv --accelerator cpu --epochs 3 --num-workers 0 --task-type classification --save-dir test_cli_classification_mol cp -L test_cli_classification_mol/model_0/best.pt $CHEMPROP_PATH/tests/data/example_model_v2_classification_mol.pt # test_cli_classification_mol_multiclass rm -rf test_cli_classification_mol_multiclass chemprop train -i $CHEMPROP_PATH/tests/data/classification/mol_multiclass.csv --accelerator cpu --epochs 3 --num-workers 0 --save-dir test_cli_classification_mol_multiclass --task-type multiclass cp -L test_cli_classification_mol_multiclass/model_0/best.pt $CHEMPROP_PATH/tests/data/example_model_v2_classification_mol_multiclass.pt # test_cli_regression_mol+mol rm -rf test_cli_regression_mol+mol chemprop train -i $CHEMPROP_PATH/tests/data/regression/mol+mol/mol+mol.csv --accelerator cpu --epochs 3 --num-workers 0 --smiles-columns smiles solvent --save-dir test_cli_regression_mol+mol cp -L test_cli_regression_mol+mol/model_0/best.pt $CHEMPROP_PATH/tests/data/example_model_v2_regression_mol+mol.pt cp -L test_cli_regression_mol+mol/model_0/checkpoints/best*.ckpt $CHEMPROP_PATH/tests/data/example_model_v2_regression_mol+mol.ckpt # test_cli_regression_mol rm -rf test_cli_regression_mol chemprop train -i $CHEMPROP_PATH/tests/data/regression/mol/mol.csv --accelerator cpu --epochs 3 --num-workers 0 --save-dir test_cli_regression_mol cp -L test_cli_regression_mol/model_0/best.pt $CHEMPROP_PATH/tests/data/example_model_v2_regression_mol.pt cp -L test_cli_regression_mol/model_0/checkpoints/best*.ckpt $CHEMPROP_PATH/tests/data/example_model_v2_regression_mol.ckpt # test_cli_regression_mol_multitask rm -rf test_cli_regression_mol_multitask chemprop train -i $CHEMPROP_PATH/tests/data/regression/mol_multitask.csv --accelerator cpu --epochs 3 --num-workers 0 --save-dir test_cli_regression_mol_multitask cp -L test_cli_regression_mol_multitask/model_0/best.pt $CHEMPROP_PATH/tests/data/example_model_v2_regression_mol_multitask.pt # test_cli_regression_rxn+mol rm -rf test_cli_regression_rxn+mol chemprop train -i $CHEMPROP_PATH/tests/data/regression/rxn+mol/rxn+mol.csv --accelerator cpu --epochs 3 --num-workers 0 --reaction-columns rxn_smiles --smiles-columns solvent_smiles --save-dir test_cli_regression_rxn+mol cp -L test_cli_regression_rxn+mol/model_0/best.pt $CHEMPROP_PATH/tests/data/example_model_v2_regression_rxn+mol.pt # test_cli_regression_rxn rm -rf test_cli_regression_rxn chemprop train -i $CHEMPROP_PATH/tests/data/regression/rxn/rxn.csv --accelerator cpu --epochs 3 --num-workers 0 --reaction-columns smiles --save-dir test_cli_regression_rxn cp -L test_cli_regression_rxn/model_0/best.pt $CHEMPROP_PATH/tests/data/example_model_v2_regression_rxn.pt cp -L test_cli_regression_rxn/model_0/checkpoints/best*.ckpt $CHEMPROP_PATH/tests/data/example_model_v2_regression_rxn.ckpt # test_cli_regression_mve_mol rm -rf test_cli_regression_mve_mol chemprop train -i $CHEMPROP_PATH/tests/data/regression/mol/mol.csv --accelerator cpu --epochs 3 --num-workers 0 --save-dir test_cli_regression_mve_mol --task-type regression-mve cp -L test_cli_regression_mve_mol/model_0/best.pt $CHEMPROP_PATH/tests/data/example_model_v2_regression_mve_mol.pt # test_cli_regression_evidential_mol rm -rf test_cli_regression_evidential_mol chemprop train -i $CHEMPROP_PATH/tests/data/regression/mol/mol.csv --accelerator cpu --epochs 3 --num-workers 0 --save-dir test_cli_regression_evidential_mol --task-type regression-evidential cp -L test_cli_regression_evidential_mol/model_0/best.pt $CHEMPROP_PATH/tests/data/example_model_v2_regression_evidential_mol.pt test_cli_classification_dirichlet_mol rm -rf test_cli_classification_dirichlet_mol chemprop train -i $CHEMPROP_PATH/tests/data/classification/mol.csv --accelerator cpu --epochs 3 --num-workers 0 --save-dir test_cli_classification_dirichlet_mol --task-type classification-dirichlet cp -L test_cli_classification_dirichlet_mol/model_0/best.pt $CHEMPROP_PATH/tests/data/example_model_v2_classification_dirichlet_mol.pt # test_cli_classification_dirichlet_mol rm -rf test_cli_multiclass_dirichlet_mol chemprop train -i $CHEMPROP_PATH/tests/data/classification/mol_multiclass.csv --accelerator cpu --epochs 3 --num-workers 0 --save-dir test_cli_multiclass_dirichlet_mol --task-type multiclass-dirichlet cp -L test_cli_multiclass_dirichlet_mol/model_0/best.pt $CHEMPROP_PATH/tests/data/example_model_v2_multiclass_dirichlet_mol.pt