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#!/bin/bash
# helper script to convert all jupyter notebooks in the preprocessing folder to python scripts without having to open up jupyter lab
# Get the directory of the script (preprocessing folder)
NOTEBOOK_DIR="$(dirname "$0")"
echo "Starting conversion of Jupyter notebooks to Python scripts in directory: $NOTEBOOK_DIR"
# Convert all .ipynb files in the directory to .py files
for notebook in "$NOTEBOOK_DIR"/*.ipynb; do
# Extract the filename without the path
filename=$(basename -- "$notebook")
echo "Converting $filename to Python script..."
# Run the conversion
jupytext --to py "$notebook"
# Check if the conversion was successful
if [ $? -eq 0 ]; then
echo "Successfully converted $filename to ${filename%.ipynb}.py"
else
echo "Failed to convert $filename"
fi
done
echo "Conversion process completed."
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