diff --git a/.gitattributes b/.gitattributes index 6d3c63c322246c3fb7990f30b431c8dd2bc3ea15..47c7985b82d0c7906dc9bf9746f05673727dfbbe 100644 --- a/.gitattributes +++ b/.gitattributes @@ -131,3 +131,77 @@ data/mimic_subset/96.jpg filter=lfs diff=lfs merge=lfs -text data/mimic_subset/97.jpg filter=lfs diff=lfs merge=lfs -text data/mimic_subset/98.jpg filter=lfs diff=lfs merge=lfs -text data/mimic_subset/99.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/101.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/109.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/114.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/132.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/146.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/161.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/168.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/171.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/174.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/182.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/185.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/190.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/203.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/207.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/208.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/209.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/210.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/213.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/215.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/216.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/218.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/229.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/232.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/239.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/245.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/251.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/256.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/260.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/262.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/264.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/267.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/283.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/285.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/289.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/295.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/300.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/301.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/303.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/309.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/313.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/315.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/322.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/323.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/325.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/326.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/331.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/332.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/336.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/338.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/340.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/344.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/345.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/353.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/359.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/372.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/375.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/398.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/399.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/406.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/407.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/409.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/422.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/427.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/442.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/448.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/450.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/457.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/460.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/466.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/480.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/481.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/485.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/490.jpg filter=lfs diff=lfs merge=lfs -text +data/mimic_subset/491.jpg filter=lfs diff=lfs merge=lfs -text diff --git a/app.py b/app.py index e1e891c9eca71c21b31d9012f2542286c9862254..411f0cf840de4195d320603813e2aeb85f3eb988 100644 --- a/app.py +++ b/app.py @@ -33,8 +33,9 @@ HEIGHT, WIDTH = 500, 500 # chest SEX_CAT_CHEST = ["female", "male"] # 0,1 RACE_CAT = ["white", "black", "asian"] # 0,1,2 -FIND_CAT = ["no disease", "consolidation", "opacity"] # 0,1,2 -DEVICE = torch.device("cuda:0" if torch.cuda.is_available() else "cpu") +# FIND_CAT = ["no disease", "consolidation", "opacity"] # 0,1,2 +FIND_CAT = ["no disease", "effusion", "pneumonia"] # 0,1,2 +DEVICE = torch.device("cuda:1" if torch.cuda.is_available() else "cpu") class Hparams: @@ -72,10 +73,10 @@ def get_paths(dataset_id): vae_path = "./checkpoints/m_b_v_s/ukbb192_beta5_dgauss_b33/checkpoint.pt" elif "Chest" in dataset_id: data_path = "./data/mimic_subset" - pgm_path = "./checkpoints/a_r_s_f/sup_pgm_mimic/checkpoint.pt" + pgm_path = "./checkpoints/a_r_s_f/sup_pgm_mimic/60k_checkpoint.pt" vae_path = [ - "./checkpoints/a_r_s_f/mimic_beta9_gelu_dgauss_1_lr3/checkpoint.pt", # base vae - "./checkpoints/a_r_s_f/mimic_dscm_lr_1e5_lagrange_lr_1_damping_10/6500_checkpoint.pt", # cf trained DSCM + "./checkpoints/a_r_s_f/mimic_beta9_gelu_dgauss_1_lr3/60k_checkpoint.pt", # base vae + "./checkpoints/a_r_s_f/mimic_dscm_lr_1e5_lagrange_lr_1_damping_10/60k_checkpoint.pt", # cf trained DSCM ] return data_path, vae_path, pgm_path @@ -580,25 +581,25 @@ with gr.Blocks(theme=gr.themes.Default()) as demo: with gr.Row(): #.style(equal_height=True): idx_chest = gr.Number(value=0, visible=False) with gr.Column(scale=1, min_width=200): - x_chest = gr.Image(label="Observation", interactive=False,).style(height=HEIGHT,css=".label { font-size: 80px; }") + x_chest = gr.Image(label="Observation", interactive=False, height=HEIGHT) #.style(height=HEIGHT,css=".label { font-size: 80px; }") with gr.Column(scale=1, min_width=200): cf_x_chest = gr.Image( - label="Counterfactual", interactive=False).style(height=HEIGHT, css=".label { font-size: 80px; }") + label="Counterfactual", interactive=False, height=HEIGHT) #.style(height=HEIGHT, css=".label { font-size: 80px; }") with gr.Column(scale=1, min_width=200): cf_x_std_chest = gr.Image( - label="Counterfactual Uncertainty", interactive=False).style(height=HEIGHT,css=".label { font-size: 80px; }") + label="Counterfactual Uncertainty", interactive=False, height=HEIGHT) #.style(height=HEIGHT,css=".label { font-size: 80px; }") with gr.Column(scale=1, min_width=200): effect_chest = gr.Image( - label="Direct Causal Effect", interactive=False).style(height=HEIGHT,css=".label { font-size: 80px; }") + label="Direct Causal Effect", interactive=False, height=HEIGHT) #.style(height=HEIGHT,css=".label { font-size: 80px; }") with gr.Row(): with gr.Column(scale=2.55): - gr.Markdown( - "**Intervention**" - + 20 * " " - + "[arXiv paper](https://arxiv.org/abs/2306.15764)   |   [GitHub code](https://github.com/biomedia-mira/causal-gen)" - + "  |   Hint: try 90% zoom" - ) + # gr.Markdown( + # "**Intervention**" + # + 20 * " " + # + "[arXiv paper](https://arxiv.org/abs/2306.15764)   |   [GitHub code](https://github.com/biomedia-mira/causal-gen)" + # + "  |   Hint: try 90% zoom" + # ) with gr.Row(equal_height=True): #.style(equal_height=True): with gr.Column(min_width=200): do_f_chest = gr.Checkbox(label="do(disease)", value=False) @@ -626,7 +627,7 @@ with gr.Blocks(theme=gr.themes.Default()) as demo: with gr.Column(scale=1): # gr.Markdown("###  ") causal_graph_chest = gr.Image( - label="Causal Graph", interactive=False).style(height=345) + label="Causal Graph", interactive=False,height=345) #.style(height=345) # # morphomnist # do = [do_t, do_i, do_y] diff --git a/app_prep b/app_prep new file mode 100644 index 0000000000000000000000000000000000000000..c9d2e2e5c5cb6fef3ef404350efe2c081fa3c174 --- /dev/null +++ b/app_prep @@ -0,0 +1,66 @@ +#!/usr/bin/env python3 +# -*- coding: utf-8 -*- +""" +Created on Wed Apr 17 19:47:32 2024 + +@author: yanwe +""" + +import pandas as pd +import shutil +import os + +test = pd.read_csv('/mnt/de1dcd1c-9be8-42ed-aa06-bb73570121ac/MIMIC_CXR/60k/meta/test.csv', nrows=500) +test['path_preproc'] = None +for n in range(500): + test.loc[n,'path_preproc'] = f'{n}.jpg' + + +source_file = '/mnt/de1dcd1c-9be8-42ed-aa06-bb73570121ac/MIMIC_CXR/60k/data' +target_directory = '/mnt/de1dcd1c-9be8-42ed-aa06-bb73570121ac/cf_app/data/mimic_subset' + +for n in range(500): + file_name = os.path.join(source_file, test.loc[n,'dicom_id'] + '.jpg') + new_name = os.path.join(target_directory, test.loc[n,'path_preproc']) + shutil.copy(file_name, new_name) + + +def label_to_name(data): + if data['disease_label'] == 0: + return "No Finding" + elif data['disease_label'] == 1: + return "Pleural Effusion" + elif data['disease_label'] == 2: + return "Pneumonia" + else: + return "No Finding" + +def label_to_sex(data): + if data['sex_label'] == 0: + return "Female" + elif data['sex_label'] == 1: + return "Male" + else: + return "Female" + +def label_to_race(data): + if data['race_label'] == 0: + return "White" + elif data['race_label'] == 1: + return "Black" + elif data['race_label'] == 2: + return "Asian" + + +test['disease'] = test.apply(label_to_name, axis=1) +test['sex'] = test.apply(label_to_sex, axis=1) +test['race'] = test.apply(label_to_race, axis=1) + + +test.to_csv('/mnt/de1dcd1c-9be8-42ed-aa06-bb73570121ac/cf_app/data/mimic_subset/mimic.sample.test.csv') + + + + + + diff --git a/checkpoints/a_r_s_f/mimic_beta9_gelu_dgauss_1_lr3/60k_checkpoint.pt b/checkpoints/a_r_s_f/mimic_beta9_gelu_dgauss_1_lr3/60k_checkpoint.pt new file mode 100644 index 0000000000000000000000000000000000000000..d8f8465e46eda23b9cd19f317fa42445f029bf4c --- /dev/null +++ b/checkpoints/a_r_s_f/mimic_beta9_gelu_dgauss_1_lr3/60k_checkpoint.pt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0f3a3109108d934c89787d8c275d72dddd3d958bb76c8d5c838fe2470b70959f +size 130217239 diff --git a/checkpoints/a_r_s_f/mimic_dscm_lr_1e5_lagrange_lr_1_damping_10/60k_checkpoint.pt b/checkpoints/a_r_s_f/mimic_dscm_lr_1e5_lagrange_lr_1_damping_10/60k_checkpoint.pt new file mode 100644 index 0000000000000000000000000000000000000000..e16a23a6a407ea7dfea9e11263f8d61df3e85fb9 --- /dev/null +++ b/checkpoints/a_r_s_f/mimic_dscm_lr_1e5_lagrange_lr_1_damping_10/60k_checkpoint.pt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e35ffd4a1387d905970b0455639e269ae6eeb5004dc8d2599f9694dacfc56545 +size 219922875 diff --git a/checkpoints/a_r_s_f/sup_pgm_mimic/60k_checkpoint.pt b/checkpoints/a_r_s_f/sup_pgm_mimic/60k_checkpoint.pt new file mode 100644 index 0000000000000000000000000000000000000000..9a7441cc2b8ca59e4ea8c1fd31c7e3195c9f53a2 --- /dev/null +++ b/checkpoints/a_r_s_f/sup_pgm_mimic/60k_checkpoint.pt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:abe321cc3c832c4e9ac27fafdc6d1bb2ce0b6c9c4ca72deec3d856c0bcad0b08 +size 26091 diff --git a/data/mimic_subset/10.jpg b/data/mimic_subset/10.jpg index 290c2745696027b6b3b577033545fd348fc34ae6..3cfcb3cbd3641f11551e5def56986e6308929843 100644 --- a/data/mimic_subset/10.jpg +++ b/data/mimic_subset/10.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:b461cee12478cea4372462a17ea375d97632ccb1a9f3681235c05a1a831070f2 -size 1998073 +oid sha256:e9e8c225110fa9744db1d701aa0d95cf56e94082507c256de7c3b86f038b94de +size 2069910 diff --git a/data/mimic_subset/101.jpg b/data/mimic_subset/101.jpg new file mode 100644 index 0000000000000000000000000000000000000000..7826654c6b4b61907fcb619ff65459d95f9b96dd --- /dev/null +++ b/data/mimic_subset/101.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ef7aee1aca2e16f6844d9bea24e9cfc621b510ac118134f67fe2aeee6589d08f +size 1946430 diff --git a/data/mimic_subset/109.jpg b/data/mimic_subset/109.jpg new file mode 100644 index 0000000000000000000000000000000000000000..872f17239a6bf34088a2d174bf8bfce091034a57 --- /dev/null +++ b/data/mimic_subset/109.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e7b9e736ae2ce8d17ec07183f04c7e3a92250345c48117c4bd1cfe36a37c9785 +size 1812105 diff --git a/data/mimic_subset/11.jpg b/data/mimic_subset/11.jpg index 6b7c62755edc15c718babba94c65c37a330690d7..96df80ff98edafe5d9c214883bfc1d99216363ee 100644 --- a/data/mimic_subset/11.jpg +++ b/data/mimic_subset/11.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:fdc3063b7b2d61865c25e074d71edbe7884437a23c54922f6cefd9d6de47e2b0 -size 1639270 +oid sha256:9f52a078c30094e70f24e6203490d7e31483be54e27861b2415b6bcbc031e78b +size 1640593 diff --git a/data/mimic_subset/114.jpg b/data/mimic_subset/114.jpg new file mode 100644 index 0000000000000000000000000000000000000000..3503b0761ba42eda7fcbed253af2557146ea956f --- /dev/null +++ b/data/mimic_subset/114.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6df3dd370cfd3d463a96aa5b04e17430ff7283b5aa9e0401a8f107596f1d9ad4 +size 1608086 diff --git a/data/mimic_subset/132.jpg b/data/mimic_subset/132.jpg new file mode 100644 index 0000000000000000000000000000000000000000..43e8bf2f4e04285e101be6ac4c930d3524b52186 --- /dev/null +++ b/data/mimic_subset/132.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fae749f725f229e5e7c06185ffc027bbafdcc400ecbdb24ccda577afb15d8e6b +size 2366482 diff --git a/data/mimic_subset/146.jpg b/data/mimic_subset/146.jpg new file mode 100644 index 0000000000000000000000000000000000000000..36197401b0133bfadef270d4673f51fdcdb056f4 --- /dev/null +++ b/data/mimic_subset/146.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c42741a8904a210e09e9c38f3ac0880655a81a27d897e2c1d32a8e75db9558f4 +size 1515003 diff --git a/data/mimic_subset/161.jpg b/data/mimic_subset/161.jpg new file mode 100644 index 0000000000000000000000000000000000000000..1636c1cd535a861c0ba461e1cedc72e2e01c303e --- /dev/null +++ b/data/mimic_subset/161.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dc9fd77b2c7b3a722c795a546f07345fd3b539383f468cd30c01f65e36628503 +size 1616824 diff --git a/data/mimic_subset/168.jpg b/data/mimic_subset/168.jpg new file mode 100644 index 0000000000000000000000000000000000000000..696239ce195f7f9f0cbd48335cdd166c0dcc0cc8 --- /dev/null +++ b/data/mimic_subset/168.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b3a1ce966185851a414adbb234101fb0c4f613af177aae4a6d9a22a56a4b734e +size 1550131 diff --git a/data/mimic_subset/171.jpg b/data/mimic_subset/171.jpg new file mode 100644 index 0000000000000000000000000000000000000000..35a500f445fe80f93c36d55f41049b0f3b877a7b --- /dev/null +++ b/data/mimic_subset/171.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c457b2d559b5f3319ef69451d6111dfe90b0a235f118e1981c2e02b229bf414a +size 1984174 diff --git a/data/mimic_subset/174.jpg b/data/mimic_subset/174.jpg new file mode 100644 index 0000000000000000000000000000000000000000..3c14206595a77569897f53777ab996eda5d7a1d0 --- /dev/null +++ b/data/mimic_subset/174.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ac96e4b1744cdec22764fd19ad7060d30527cf56e6199cca5e5e10dff29b4dc0 +size 2077378 diff --git a/data/mimic_subset/18.jpg b/data/mimic_subset/18.jpg index 505028d638a48039a3db26e03c8e9a4d06a950f7..9649f0faa48014bdeb7071a4d35ba94f8886bb05 100644 --- a/data/mimic_subset/18.jpg +++ b/data/mimic_subset/18.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:8badab7a1b553a606da389b21734e5dbb18be1bc200a1923dfbc25397dc70dd4 -size 1822972 +oid sha256:34458b2dc06ba75f9edd53cc66ed64f443036f4d6987a207a0337faeaee04e51 +size 1108018 diff --git a/data/mimic_subset/182.jpg b/data/mimic_subset/182.jpg new file mode 100644 index 0000000000000000000000000000000000000000..ba01d412689c4bdeef033b566adb84ec3340a0a5 --- /dev/null +++ b/data/mimic_subset/182.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:33888443e97b6df25e4e5cb48b3e9aa368c24ae4b34b9331227120670afbfc88 +size 2022721 diff --git a/data/mimic_subset/185.jpg b/data/mimic_subset/185.jpg new file mode 100644 index 0000000000000000000000000000000000000000..5553cc21255e7c09f239145cb2cf22e6f20b0503 --- /dev/null +++ b/data/mimic_subset/185.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:895d1b631224374ff22dac23a6a59b22d08c93a7a45136d885552f7c049f699b +size 1670360 diff --git a/data/mimic_subset/190.jpg b/data/mimic_subset/190.jpg new file mode 100644 index 0000000000000000000000000000000000000000..d0b4c0baff77d4d010601268362638febfc61c8a --- /dev/null +++ b/data/mimic_subset/190.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c307414e5bc2d0dfcf2ff93733d9ca31b000c6204d5f2992e18505c724859937 +size 1858263 diff --git a/data/mimic_subset/203.jpg b/data/mimic_subset/203.jpg new file mode 100644 index 0000000000000000000000000000000000000000..e5b28bd688d57f92de6243a7561b2fedc3b2855f --- /dev/null +++ b/data/mimic_subset/203.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:617ea972f54539bcd5fc5e543f81a578669ae5ada2d43da1c83a49862265b9f1 +size 1842936 diff --git a/data/mimic_subset/207.jpg b/data/mimic_subset/207.jpg new file mode 100644 index 0000000000000000000000000000000000000000..e25f85e9199d79e9dd258b4b10a0b0d756f4cd22 --- /dev/null +++ b/data/mimic_subset/207.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:932cc8c46ff1b597a75bec7b4a234a95dac665e3559e4b938e4e97ef6d6f76d9 +size 1760885 diff --git a/data/mimic_subset/208.jpg b/data/mimic_subset/208.jpg new file mode 100644 index 0000000000000000000000000000000000000000..4ad70756ccff628e5e2895b9dc8517b1cdd33b74 --- /dev/null +++ b/data/mimic_subset/208.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:900519c6f3018e705a0439192add03e76d598df1b0585332f55e443f0e596de9 +size 1408424 diff --git a/data/mimic_subset/209.jpg b/data/mimic_subset/209.jpg new file mode 100644 index 0000000000000000000000000000000000000000..1bc4348d88e16479b09a9d534d11cbfa66e4c2f6 --- /dev/null +++ b/data/mimic_subset/209.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:31809a946af5df6fa53fc54a3ce0e0cacf9905e712cdb127a412d283418e2de4 +size 1890137 diff --git a/data/mimic_subset/210.jpg b/data/mimic_subset/210.jpg new file mode 100644 index 0000000000000000000000000000000000000000..c3dc52f5f6b0eb5d70285c2e0d5db20818806e66 --- /dev/null +++ b/data/mimic_subset/210.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:563af07dcc2ecaff4aa60c9f61e3062f5bab1f3455c1dbf5fc87b7aa363c6d74 +size 1360725 diff --git a/data/mimic_subset/213.jpg b/data/mimic_subset/213.jpg new file mode 100644 index 0000000000000000000000000000000000000000..8997ca2026735b0ddb5e107f537c023c4b75ecb7 --- /dev/null +++ b/data/mimic_subset/213.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b0f8d78adbf66e3bbdc7af33d20bef934bfc7d86bd78ccac20184d6a9d54f14a +size 1711477 diff --git a/data/mimic_subset/215.jpg b/data/mimic_subset/215.jpg new file mode 100644 index 0000000000000000000000000000000000000000..f03364eee43a4c7cf8868dda1031854274d2292b --- /dev/null +++ b/data/mimic_subset/215.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d8b0b33604136788e28b744cbf4a72009161703200ab6cba9c55b1707f6f7873 +size 1709782 diff --git a/data/mimic_subset/216.jpg b/data/mimic_subset/216.jpg new file mode 100644 index 0000000000000000000000000000000000000000..b1e9babd4e366b645a711e1b09d9b02c913a941d --- /dev/null +++ b/data/mimic_subset/216.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:32b74364a272da07cb7c7e4d4d37f7442985ba2572d2aa2e61beae536b14191d +size 2453090 diff --git a/data/mimic_subset/218.jpg b/data/mimic_subset/218.jpg new file mode 100644 index 0000000000000000000000000000000000000000..d540284b907b08be2ddb9a9ecf1266e12585c28a --- /dev/null +++ b/data/mimic_subset/218.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a2bea29f519e39c0fbaf611dfc8211a096bb22b0652d731b35df68df3bbee4fd +size 1776061 diff --git a/data/mimic_subset/229.jpg b/data/mimic_subset/229.jpg new file mode 100644 index 0000000000000000000000000000000000000000..420d9f2f18e475ce65f113ee983896d8763a04f4 --- /dev/null +++ b/data/mimic_subset/229.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1eb264be412f7520198cb341d8291b4016100cc21946a5714d4d62935c01342a +size 2003178 diff --git a/data/mimic_subset/232.jpg b/data/mimic_subset/232.jpg new file mode 100644 index 0000000000000000000000000000000000000000..937568206de4fdbf859a74484f1a619596dc5174 --- /dev/null +++ b/data/mimic_subset/232.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:988c8ef981f1e221016983509cb30f36b73c9cd11257c156a214183b6fd9c46d +size 1323935 diff --git a/data/mimic_subset/239.jpg b/data/mimic_subset/239.jpg new file mode 100644 index 0000000000000000000000000000000000000000..893591014769fdcd98559f2452af315c849c426e --- /dev/null +++ b/data/mimic_subset/239.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d7edea9f10af288ed1e9efb3996d203382c4feae20a155f2dd7da1556abcf154 +size 2074206 diff --git a/data/mimic_subset/245.jpg b/data/mimic_subset/245.jpg new file mode 100644 index 0000000000000000000000000000000000000000..174bf9f315a234190cf2953549554d687ca1d9ee --- /dev/null +++ b/data/mimic_subset/245.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1af468e9471e9ca3aa298d75c8822edd10092f8c691d83f9a5f67f09275d20e4 +size 2027857 diff --git a/data/mimic_subset/251.jpg b/data/mimic_subset/251.jpg new file mode 100644 index 0000000000000000000000000000000000000000..b1381435d0aa8e5d83dfe4fce9040af0b51ff5ff --- /dev/null +++ b/data/mimic_subset/251.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:40077b14f16e4480f92bd16b2a390aab6322b14565e0cbf6674a1db998bfd455 +size 1802052 diff --git a/data/mimic_subset/256.jpg b/data/mimic_subset/256.jpg new file mode 100644 index 0000000000000000000000000000000000000000..5dd44235cc72a2c8e6e898c787c4681619f209a5 --- /dev/null +++ b/data/mimic_subset/256.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f7598f5299f4a9fc7612bd5203cede23d415f905e7727026b054f24707f4c8cc +size 2126071 diff --git a/data/mimic_subset/258.jpg b/data/mimic_subset/258.jpg new file mode 100644 index 0000000000000000000000000000000000000000..1e0f0c934477c7e87276553e080d6b2ba3335b47 Binary files /dev/null and b/data/mimic_subset/258.jpg differ diff --git a/data/mimic_subset/260.jpg b/data/mimic_subset/260.jpg new file mode 100644 index 0000000000000000000000000000000000000000..861ff8a2bfabbe1217659ef22b399f9050078eb5 --- /dev/null +++ b/data/mimic_subset/260.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:73ab0c9fe67d005486c3c6ea85b4e5f49012a98b31272bbd066e3b88c07f4177 +size 2267364 diff --git a/data/mimic_subset/262.jpg b/data/mimic_subset/262.jpg new file mode 100644 index 0000000000000000000000000000000000000000..1940433d4137166433c4d2ee0105065bc38141ff --- /dev/null +++ b/data/mimic_subset/262.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dc25466723c082016e7069c74fa14b092f3cf5946f325e7173b58084535b74c7 +size 1738023 diff --git a/data/mimic_subset/264.jpg b/data/mimic_subset/264.jpg new file mode 100644 index 0000000000000000000000000000000000000000..cb2f284b9e88f6d0f3e1696708aaee172b9b573c --- /dev/null +++ b/data/mimic_subset/264.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:30b64d58063d05f935b42a84b813ba4335abe97d74bcd2117b2aa0283b8ac0cb +size 2532470 diff --git a/data/mimic_subset/267.jpg b/data/mimic_subset/267.jpg new file mode 100644 index 0000000000000000000000000000000000000000..d66b5437a19aec3976af82d1d0b5b213418ba043 --- /dev/null +++ b/data/mimic_subset/267.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:412afee0e8dd18b5526238fe3ce5cd5786fe144281ff27e16143397b10090028 +size 1753722 diff --git a/data/mimic_subset/27.jpg b/data/mimic_subset/27.jpg index 91050f8fadb71d5a40be2584b8b5629e721eaa05..b9c3e7da4fd9e7542206f0e0e9ef41ed101691b8 100644 --- a/data/mimic_subset/27.jpg +++ b/data/mimic_subset/27.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:ffc68005c1304b84f675034f707ba812aee8d9bbce31b75eb268bf708baf3baf -size 1767919 +oid sha256:9a257441a5d4dd30ac67577f2f58069b489915bf63cb351a60b86165678e2f2f +size 2041557 diff --git a/data/mimic_subset/283.jpg b/data/mimic_subset/283.jpg new file mode 100644 index 0000000000000000000000000000000000000000..99a71697d30b90950628db574f397f1959e1eb29 --- /dev/null +++ b/data/mimic_subset/283.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:55cbe521d220c0938b64a4eca2ad1a3cdc9852eb4aaebb7b810215eff40761a6 +size 1759834 diff --git a/data/mimic_subset/285.jpg b/data/mimic_subset/285.jpg new file mode 100644 index 0000000000000000000000000000000000000000..fe1fbb008f417765276a4d56bdc3da3765c1c9f0 --- /dev/null +++ b/data/mimic_subset/285.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:33cc11b7feb34d8244a81f4f7f1941daf7d2ed1eeb5f3d3262f1a22b6877fd7f +size 2440744 diff --git a/data/mimic_subset/289.jpg b/data/mimic_subset/289.jpg new file mode 100644 index 0000000000000000000000000000000000000000..a419b237c95b7d420a468bf0d79dce7d09573aa2 --- /dev/null +++ b/data/mimic_subset/289.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:41bf7bc9069aa7624bf93a241c314453b451e8f44c48e3c55d052e23b5aaaf0a +size 1006512 diff --git a/data/mimic_subset/295.jpg b/data/mimic_subset/295.jpg new file mode 100644 index 0000000000000000000000000000000000000000..815328095114195d8114aeb4145c8008bbb2cf4e --- /dev/null +++ b/data/mimic_subset/295.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:76747f3345f8b0ed4363a123bebabe45cdfb0150810dd1aae1c5dcfd34be335c +size 1657544 diff --git a/data/mimic_subset/30.jpg b/data/mimic_subset/30.jpg index 867d45d0d6784308de8e2957603accefb9a1c887..fd381fea8a8970e61f90df2ceb2358be0c003a2a 100644 --- a/data/mimic_subset/30.jpg +++ b/data/mimic_subset/30.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:314a9ba60d08cb36fd378759c4e43104463bf15c8b6fa0389baa57ae660185c5 -size 2161250 +oid sha256:b54d93317bc6cdf256e10650dbf8b4cc82de67bd1c1dae65ebfc405671e6534b +size 1986312 diff --git a/data/mimic_subset/300.jpg b/data/mimic_subset/300.jpg new file mode 100644 index 0000000000000000000000000000000000000000..e200cd1f404e80ceb6f707452feb96ddfc93af53 --- /dev/null +++ b/data/mimic_subset/300.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:48c300bf374a855f28b8cfd67cb4f5cce09ea93b50ef59a044b562fdc9776e1d +size 1531592 diff --git a/data/mimic_subset/301.jpg b/data/mimic_subset/301.jpg new file mode 100644 index 0000000000000000000000000000000000000000..43d26cd94d9f0505f29fddee3ec8265f691b7d3f --- /dev/null +++ b/data/mimic_subset/301.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b70647c544f7c4567c4fec976b2acb4f0c2daacb4d345c470a741d85254e6964 +size 1846940 diff --git a/data/mimic_subset/303.jpg b/data/mimic_subset/303.jpg new file mode 100644 index 0000000000000000000000000000000000000000..c2a7d761a5efd5aec0f8e046a80f8f613a16dc85 --- /dev/null +++ b/data/mimic_subset/303.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:72f3ff5db0eefebdb90352c43c5ce0b56ee62d048ad8fb6448f01f63ff0fc8ad +size 2090038 diff --git a/data/mimic_subset/309.jpg b/data/mimic_subset/309.jpg new file mode 100644 index 0000000000000000000000000000000000000000..3fa5211672183a7970df38f1b446e878820c2683 --- /dev/null +++ b/data/mimic_subset/309.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a2f58eca30b485806ed421ad1de083293b5aa74023b916ed712f96ebe43676a8 +size 1729549 diff --git a/data/mimic_subset/31.jpg b/data/mimic_subset/31.jpg index 4ee25ab206fa9e5a1d5e6bc00b5d678d2b5e128d..d0fad07a9f6bf508fccd80011ad978f6b101cacc 100644 --- a/data/mimic_subset/31.jpg +++ b/data/mimic_subset/31.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:3316ef679168c9ecc3016004cc57ed7c45748dc22e039425d783b9130713bb57 -size 1476643 +oid sha256:498881666a1da06a9f2be3d134b210114ec8d5e5f541d361ff4035cbd60973ec +size 2020636 diff --git a/data/mimic_subset/313.jpg b/data/mimic_subset/313.jpg new file mode 100644 index 0000000000000000000000000000000000000000..67e5222b05eedd0dc04924e73175e417dcd5f698 --- /dev/null +++ b/data/mimic_subset/313.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:744608e336865be5896305346ad8cbd3cd92658b73c9cecfcac9d447d01dfc4c +size 1732709 diff --git a/data/mimic_subset/315.jpg b/data/mimic_subset/315.jpg new file mode 100644 index 0000000000000000000000000000000000000000..deda16572d08226462f548791a72d6d6404807c0 --- /dev/null +++ b/data/mimic_subset/315.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eb5b61a16d09039bfb3088c3c81f0b6e1bd66f68ba3b91c7555545b1e7e058b1 +size 1635862 diff --git a/data/mimic_subset/322.jpg b/data/mimic_subset/322.jpg new file mode 100644 index 0000000000000000000000000000000000000000..75892d99b746dc892e466f93ea49f529a42bd961 --- /dev/null +++ b/data/mimic_subset/322.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fd1a09d49ecf57c1935d65d2fe4a921153fa3789da5dcd881dbd2a0443c41c87 +size 1678998 diff --git a/data/mimic_subset/323.jpg b/data/mimic_subset/323.jpg new file mode 100644 index 0000000000000000000000000000000000000000..579850c12ae595e2f9f36f58627bb344bacb5aae --- /dev/null +++ b/data/mimic_subset/323.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c4f8c3f6424ca513c279963edb1754eea5954082cc887409bb6e1fa6ffbd5d43 +size 2330537 diff --git a/data/mimic_subset/325.jpg b/data/mimic_subset/325.jpg new file mode 100644 index 0000000000000000000000000000000000000000..1d9a8197e3a5b425c12c85fac6f84b3c7cc69a1e --- /dev/null +++ b/data/mimic_subset/325.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:72a99a66db893aee9e6383450fa5da9a9a72065c7ae3f8faad346a0e545f2eb6 +size 1443138 diff --git a/data/mimic_subset/326.jpg b/data/mimic_subset/326.jpg new file mode 100644 index 0000000000000000000000000000000000000000..d1c3fb43455029032b987810c2317d11348de006 --- /dev/null +++ b/data/mimic_subset/326.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1470828921c3976b8599640306c1d0f3247b13ba16ae16032de698f1560a0cbc +size 1819414 diff --git a/data/mimic_subset/331.jpg b/data/mimic_subset/331.jpg new file mode 100644 index 0000000000000000000000000000000000000000..1f8d1faef524d257e4c63dff9f8cf19211da2976 --- /dev/null +++ b/data/mimic_subset/331.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e2d2fff6f633fff4eb09a6ee32a5cf516b07a392b0c13ee3503b95ddc24be92c +size 1967572 diff --git a/data/mimic_subset/332.jpg b/data/mimic_subset/332.jpg new file mode 100644 index 0000000000000000000000000000000000000000..3b3279713c5b683d932a74ac86d794c902d4526c --- /dev/null +++ b/data/mimic_subset/332.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8c6ab565019651ab586e495666663b639bfeecd89356b5c7bdb8f360223a57ea +size 1159517 diff --git a/data/mimic_subset/336.jpg b/data/mimic_subset/336.jpg new file mode 100644 index 0000000000000000000000000000000000000000..546c5a178644d5277bf7fdfed87275fff1623bcd --- /dev/null +++ b/data/mimic_subset/336.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:857c4d41dd4cc39d9e1f90a2e95af2b0d716a343c99e10b1b7b721bdfbf2ac92 +size 1994448 diff --git a/data/mimic_subset/338.jpg b/data/mimic_subset/338.jpg new file mode 100644 index 0000000000000000000000000000000000000000..f9e103a65d7eddf1c507f03f18c15013194494ee --- /dev/null +++ b/data/mimic_subset/338.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9c3dd5e575373a594d2b563cf60233ccd32247de2e5938730977730212a2dcc4 +size 1395119 diff --git a/data/mimic_subset/339.jpg b/data/mimic_subset/339.jpg new file mode 100644 index 0000000000000000000000000000000000000000..2dd67ab4eb4f54193e42f208c71f6cc41504ff4c Binary files /dev/null and b/data/mimic_subset/339.jpg differ diff --git a/data/mimic_subset/340.jpg b/data/mimic_subset/340.jpg new file mode 100644 index 0000000000000000000000000000000000000000..f9b80f4b80e9fca2c71e7a104a86a3a590863e2b --- /dev/null +++ b/data/mimic_subset/340.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e0fb95e69451389736b5a512de8df20b013f53023ad868d756558b6d0561f63c +size 2071201 diff --git a/data/mimic_subset/344.jpg b/data/mimic_subset/344.jpg new file mode 100644 index 0000000000000000000000000000000000000000..2bca0642b6fc009b8d60a8928c6096154a413769 --- /dev/null +++ b/data/mimic_subset/344.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:823c9840ebc35d0318b30d43ff2ad645f814f18cc4e80b9b6cb9e3a49acd8891 +size 1842488 diff --git a/data/mimic_subset/345.jpg b/data/mimic_subset/345.jpg new file mode 100644 index 0000000000000000000000000000000000000000..959a800d3eab05f7032943bb7801dde29e6a0c2c --- /dev/null +++ b/data/mimic_subset/345.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5d06f65bee4426a3796cef10591b0a2c9f9de95aa753a0954fe942cb2caa6ef4 +size 1621310 diff --git a/data/mimic_subset/35.jpg b/data/mimic_subset/35.jpg index 76e54a4d409da4a09143bf09b2a210a08d74b20e..ba7084700eff2c1cbeb35f74f5b22bcff5e6cbf2 100644 --- a/data/mimic_subset/35.jpg +++ b/data/mimic_subset/35.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:bd8ce6b9d0e4ae8607e8d8d3c6fac787b4cbba4aad782127f51c80cd32c83f7f -size 1828780 +oid sha256:2b8f1e94fb32f1a3a258083eb952602b186467757f24fd8be9f94726fc2ee4e9 +size 2712379 diff --git a/data/mimic_subset/353.jpg b/data/mimic_subset/353.jpg new file mode 100644 index 0000000000000000000000000000000000000000..d4cae83dd8408e8f4391f16b9e326bd26874d6a6 --- /dev/null +++ b/data/mimic_subset/353.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f6e1cd480ae0462078bd4356dc96d4da709967a85c834bd0edb3cc7967d985ba +size 1891064 diff --git a/data/mimic_subset/359.jpg b/data/mimic_subset/359.jpg new file mode 100644 index 0000000000000000000000000000000000000000..7e153eedcf0e5f24ec65110099c12e85a32bb32c --- /dev/null +++ b/data/mimic_subset/359.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e8a10e2ba690bb903af69431bfe83139bb7caff15b7bf084ce00d0cb667c4c61 +size 2557090 diff --git a/data/mimic_subset/372.jpg b/data/mimic_subset/372.jpg new file mode 100644 index 0000000000000000000000000000000000000000..212c6554d696003fb5567d3fba6a9c52ab1d3d9b --- /dev/null +++ b/data/mimic_subset/372.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:384141dd82773f2a8cf96d8f4eeb4460a4880c63a4e515d7a0f1f68deb00ea7b +size 1906834 diff --git a/data/mimic_subset/375.jpg b/data/mimic_subset/375.jpg new file mode 100644 index 0000000000000000000000000000000000000000..bd5bc7e88410d45df82b0bde5f4e849227b1bdb1 --- /dev/null +++ b/data/mimic_subset/375.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eb08b8c6bb37748548e8f0383877eb5f57a494b62a2dd465b4e70b9a7de91961 +size 1068834 diff --git a/data/mimic_subset/38.jpg b/data/mimic_subset/38.jpg index 648aeaf76726e57fdcefcb8c5ab0c15c0120f813..ba2770bbc2dd9d89528aa1a8ff63742da41fdfe8 100644 --- a/data/mimic_subset/38.jpg +++ b/data/mimic_subset/38.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:9fba81a7967313822376b7f1dbb2ff9b4ca2d7b12bfe58c3d6076a49add14dac -size 1808613 +oid sha256:8fbd057a8e6ffa98c704b223d86ca17a61be19ba71ba08d5dcdd9d378c12dbd4 +size 2126166 diff --git a/data/mimic_subset/398.jpg b/data/mimic_subset/398.jpg new file mode 100644 index 0000000000000000000000000000000000000000..159518412b193f774a8a0e4f4348f4e833f79109 --- /dev/null +++ b/data/mimic_subset/398.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:db2bb8d066df7e8d0be314482ace6b73a2982465d187a14f4db8a8af3a48fae5 +size 1465775 diff --git a/data/mimic_subset/399.jpg b/data/mimic_subset/399.jpg new file mode 100644 index 0000000000000000000000000000000000000000..2cfd9c67fb81bead9b0e08f947a25d3b77a91028 --- /dev/null +++ b/data/mimic_subset/399.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:95bc050f9c2d7eb969aa456a2451cd768bebbde67392ac3940e96645b9666575 +size 1697088 diff --git a/data/mimic_subset/406.jpg b/data/mimic_subset/406.jpg new file mode 100644 index 0000000000000000000000000000000000000000..a9a6d252b27deddcbc58c250e405c31e495146e9 --- /dev/null +++ b/data/mimic_subset/406.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8adfe395c3d01645ea40a98e9a146eee1722878150fb2da5ff375c05d88323e7 +size 1441523 diff --git a/data/mimic_subset/407.jpg b/data/mimic_subset/407.jpg new file mode 100644 index 0000000000000000000000000000000000000000..0e506e62e175ecbfbb8f9474543d1588bdcda03c --- /dev/null +++ b/data/mimic_subset/407.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5b15f9d5b2f4e41479c23da94d6cc2e6350b1ed751b9e23c94903eb4dd05e8d1 +size 1438128 diff --git a/data/mimic_subset/409.jpg b/data/mimic_subset/409.jpg new file mode 100644 index 0000000000000000000000000000000000000000..7199c3e4d21a3d77bab0512b8480649299085cf1 --- /dev/null +++ b/data/mimic_subset/409.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8df230ac1eb8975694eec367a10f896b5b8d200edfaf49304c07e72b04adf2bf +size 1426161 diff --git a/data/mimic_subset/422.jpg b/data/mimic_subset/422.jpg new file mode 100644 index 0000000000000000000000000000000000000000..f21f3290bd66d0aecd67a6bb42d686208e188a4c --- /dev/null +++ b/data/mimic_subset/422.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8058cd0e31024656e95f5eae9c802c6ee12c9154bbe97516ef73387d4dba4591 +size 1878909 diff --git a/data/mimic_subset/427.jpg b/data/mimic_subset/427.jpg new file mode 100644 index 0000000000000000000000000000000000000000..46ab08d270cf073ea9e4ee11bc111f7d02fd55d7 --- /dev/null +++ b/data/mimic_subset/427.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ff8c93bd981739d23cb9c629671320a08f6d09de34c13e4e80d0f3d41de075b4 +size 2055880 diff --git a/data/mimic_subset/442.jpg b/data/mimic_subset/442.jpg new file mode 100644 index 0000000000000000000000000000000000000000..ec69b3df279ef12ba90113199aa62dbc2d423ac2 --- /dev/null +++ b/data/mimic_subset/442.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e82d1a97ae47e50673fa2b909177177516e1d69cdaa405981767ada0f7d2be3a +size 2538233 diff --git a/data/mimic_subset/448.jpg b/data/mimic_subset/448.jpg new file mode 100644 index 0000000000000000000000000000000000000000..0bf7fdde07553cbe5fd6833d06d0415f5e498282 --- /dev/null +++ b/data/mimic_subset/448.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:46b8ebcbaeab27ff0240ef8974013706b8825f938196edcb8cb80a9c66a03d28 +size 1679381 diff --git a/data/mimic_subset/450.jpg b/data/mimic_subset/450.jpg new file mode 100644 index 0000000000000000000000000000000000000000..fa0a7b71d0f0801a4bc79c76fd50ab17a3287784 --- /dev/null +++ b/data/mimic_subset/450.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:82e116f08818efc75e5977131fe750eb8f94e7b69c56ef5e6eefaeb7a3256fb0 +size 2080427 diff --git a/data/mimic_subset/457.jpg b/data/mimic_subset/457.jpg new file mode 100644 index 0000000000000000000000000000000000000000..fac33e9c3e7c08e4e85261f811e96d0a7fc97d80 --- /dev/null +++ b/data/mimic_subset/457.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:85f15427cd990e35db4cfef9155cf6cce32a91756cce0ca8a071e08655e6a95a +size 1953228 diff --git a/data/mimic_subset/460.jpg b/data/mimic_subset/460.jpg new file mode 100644 index 0000000000000000000000000000000000000000..3d604f84bd23376868122af1959c80395303922e --- /dev/null +++ b/data/mimic_subset/460.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:09152147ccaec571d36c33579672a63352fd2c746e700fe3d696218e2e5910ec +size 1251826 diff --git a/data/mimic_subset/466.jpg b/data/mimic_subset/466.jpg new file mode 100644 index 0000000000000000000000000000000000000000..c3102720e9c2163cc91a942fe9a6af35328c8dfb --- /dev/null +++ b/data/mimic_subset/466.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:87c6001cf81ad242dde0b40894c0ed91145a263df37bdd001de430302a92a8ae +size 1355221 diff --git a/data/mimic_subset/480.jpg b/data/mimic_subset/480.jpg new file mode 100644 index 0000000000000000000000000000000000000000..af75f8ed0206d148cd6f519754c800ea68f57109 --- /dev/null +++ b/data/mimic_subset/480.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2ff37b68f9f4b9e402173747557b16f5c4ccc043bfdf2469841c21b3a2f6f4d0 +size 1546596 diff --git a/data/mimic_subset/481.jpg b/data/mimic_subset/481.jpg new file mode 100644 index 0000000000000000000000000000000000000000..fe55749f63c35d6e0c14e550d2aed0ded8e21ec4 --- /dev/null +++ b/data/mimic_subset/481.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f7da2f0c397cd355b15d9060ed6249562449a3c4be8f90700f2fda32951cdfbd +size 2014774 diff --git a/data/mimic_subset/485.jpg b/data/mimic_subset/485.jpg new file mode 100644 index 0000000000000000000000000000000000000000..aa00e34bf16459d400666e8688b2e9cd19478103 --- /dev/null +++ b/data/mimic_subset/485.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f5086e820c31176c01d8cb60fc197071757cf1db8d48f5387837f22ea5b86ad1 +size 2215224 diff --git a/data/mimic_subset/490.jpg b/data/mimic_subset/490.jpg new file mode 100644 index 0000000000000000000000000000000000000000..e93522fb2b17e6085831ccefcc6564e816ba25f7 --- /dev/null +++ b/data/mimic_subset/490.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a0640c7dac0c886dde965967e007a66f80ad755133a405bef133298ba6e37a6f +size 2466221 diff --git a/data/mimic_subset/491.jpg b/data/mimic_subset/491.jpg new file mode 100644 index 0000000000000000000000000000000000000000..fc2345381a709eb5a5dc68a4f0e7c46ad691491a --- /dev/null +++ b/data/mimic_subset/491.jpg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4dd8d5081121dead00838ca718db6186ecf4f5ee8af00c2ef57de3b18b912662 +size 1523308 diff --git a/data/mimic_subset/54.jpg b/data/mimic_subset/54.jpg index 7ede2be17d13b6665f1bd335494b69f55ce2ded2..3765b8f33bf16d366302584acd11a0be7f91ed36 100644 --- a/data/mimic_subset/54.jpg +++ b/data/mimic_subset/54.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:e41520cc3dd5e83fa3f1d5aa892e61b0fe9f1c9e57844b17c184222dd4354322 -size 2140824 +oid sha256:3b48e05faf5eb4441285d1fbbe2027fffd288b34c42069fdf066d795212d53e6 +size 1196480 diff --git a/data/mimic_subset/59.jpg b/data/mimic_subset/59.jpg index fa55ebc00f8c893272dbe6ba0bb362ab3bc51f7b..1c9f51a5d2ce3437de5b308667119529126f6fec 100644 --- a/data/mimic_subset/59.jpg +++ b/data/mimic_subset/59.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:9dd32e2f64d09c2426fd027f45646a0ab5115d266a8d646811ee46f4b32dd12f -size 1405748 +oid sha256:c4ccce5149605eaa160ea448bb479e603f2dffb31fa31d94d68f82915d4a8e98 +size 1638858 diff --git a/data/mimic_subset/63.jpg b/data/mimic_subset/63.jpg index cb456113f8ccdf309ecbe345541e418cdc2fa018..59419a5dc37317a3d1cedc11f4f701bfd5cf321c 100644 --- a/data/mimic_subset/63.jpg +++ b/data/mimic_subset/63.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:82bdddd60fb890cf86924ec96d0520ad7530c95193e59012296a972364da85e6 -size 1951049 +oid sha256:e073e2cc3608668cbdb56c95c9ea3817ca50eb44592bcd1c2bec7195ef1ca448 +size 2006242 diff --git a/data/mimic_subset/65.jpg b/data/mimic_subset/65.jpg index 72e32fc65ea8208544e224c1a37432c120fb0ffa..1c4900c9ffafc471ae3637bc153c86a539e2c4d7 100644 --- a/data/mimic_subset/65.jpg +++ b/data/mimic_subset/65.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:da4bb1eb08dada2920ea4d184bf0db8f42e425a316805a78365cd1b44bfa98c6 -size 1455528 +oid sha256:d591f93551979d533ab4a71e59cb6ab966a35d8e0b9e3cb780fe8e8bb0f3664a +size 1576584 diff --git a/data/mimic_subset/67.jpg b/data/mimic_subset/67.jpg index 807126533bba5f6d9e9dd6e94dbc2536ff229e02..e060e5dad5dadcf4828e4746536aff04df09badd 100644 --- a/data/mimic_subset/67.jpg +++ b/data/mimic_subset/67.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:019e35c7ec70d167b983bd32fa24cc3499f71c73756da46c7269dfdcfa24aeb9 -size 1714249 +oid sha256:aee4313c72a7f907219dc8fbffbdd2ae22e4d46dbf151bff3d90cf3939242db0 +size 1587994 diff --git a/data/mimic_subset/7.jpg b/data/mimic_subset/7.jpg index 0694bda3f7f9572c221bcc5b156abdad3840c1ab..20194b02c4d9c86db13de21eb784e65388469da1 100644 --- a/data/mimic_subset/7.jpg +++ b/data/mimic_subset/7.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:14fe7109d704eef49ee687c1633ffa85b8208f7e745c10233c50ec268d0976d5 -size 1786065 +oid sha256:83ce11afc693e8749eed13516c805d0d801f01217a39b915f2fae05b35dbd7a0 +size 1668304 diff --git a/data/mimic_subset/71.jpg b/data/mimic_subset/71.jpg index 390802af3b008404ea6e7d231c0a63b69196e2eb..e1f2ffd6f7c80d10496e9b7b9a98cedbafbebcba 100644 --- a/data/mimic_subset/71.jpg +++ b/data/mimic_subset/71.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:3282927e0635d8ad3f2fc1a2a21b8bd21ad9709f2b6117485a1f495d19f750b0 -size 1137459 +oid sha256:0ffdc0a99fd738845fd1c84f706c0dc0c1fc591c3b9b390dba7a8df5c34808cb +size 2341788 diff --git a/data/mimic_subset/73.jpg b/data/mimic_subset/73.jpg index 6993d2c4204e7a88cf176dc0939be6049813cc65..4f9d15e71aa99f8de62588c506c00cfe527c0b66 100644 --- a/data/mimic_subset/73.jpg +++ b/data/mimic_subset/73.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:ddfaa71aa72f68b272f446834f10956c3f5289443b1be5eee011241071ad2f6a -size 2195843 +oid sha256:7795f6c5b864cc0dfcb3cb5ff3b0dcd26bcde237c528332453fe41360ad017f7 +size 1659858 diff --git a/data/mimic_subset/74.jpg b/data/mimic_subset/74.jpg index c7fd472cee24ec7326574a8e10d71cb52ef647e7..5a6be3c3ae6b89f082ed0284ef39a6903e706646 100644 --- a/data/mimic_subset/74.jpg +++ b/data/mimic_subset/74.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:80fab166ff41a080d1eeb940f9c793208e12aafae22e6c1a379135125b562625 -size 1792643 +oid sha256:38f40e13fde75bf81de492f09910c27fccb912f3e52e6de114434f60f00d39ac +size 1545316 diff --git a/data/mimic_subset/79.jpg b/data/mimic_subset/79.jpg index fcc13b2c6b53f3b944eb768adced0377b96bdb71..c9d9d384f50366afe9f4e400814e36c334698249 100644 --- a/data/mimic_subset/79.jpg +++ b/data/mimic_subset/79.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:2b777ed4449eee539033b5255c16e42c8bbc713fab10b992bc3c50c76b894785 -size 1981676 +oid sha256:a5c637df1b9c1f9e6dd41a417d7ecae48aa8bee6abffa2aa3d794f41f16879eb +size 1986239 diff --git a/data/mimic_subset/80.jpg b/data/mimic_subset/80.jpg index 8699e2e8ec7b2f098a15f11f2b99dcfa8bc87b74..c5c549da65fda427767c4fb6c1561e36710ebbc1 100644 --- a/data/mimic_subset/80.jpg +++ b/data/mimic_subset/80.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:5f77e994239ca5e51f6f0a47af75dc853489b04ef0819339bdc34a8c7ae89024 -size 1529065 +oid sha256:c5851d265586f9a262eda655c0d056571d8139082e780c547e654db947628d92 +size 2066664 diff --git a/data/mimic_subset/88.jpg b/data/mimic_subset/88.jpg index e7280e81d434a59c517dbaa648f630372786664d..aa60564a48719283d231d8c2585d610f0a808ac9 100644 --- a/data/mimic_subset/88.jpg +++ b/data/mimic_subset/88.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:c7e4aa08a881a5abb3c4d3ab907255552587e983193ebdf0d757d22d498e955a -size 1688033 +oid sha256:45fd4c62e7c9c4ef676bdeb5f77bda4a813eb1ee2326461e41890ed562db76d2 +size 1305670 diff --git a/data/mimic_subset/9.jpg b/data/mimic_subset/9.jpg index ddce12583b73bdde7196ee63a3a0fde2a1013a2b..213c8d69987a59014c6ebde90ac0ffbb182c5360 100644 --- a/data/mimic_subset/9.jpg +++ b/data/mimic_subset/9.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:8b7e70fd699a60e04587bc899c02ce0d8c0af88e7909d16f76172ed1ec1ff5d1 -size 1272097 +oid sha256:7cf613dbede8cf8836c13ffc95d8733f600d23f4db211af4175fbfc77b9bd972 +size 1499854 diff --git a/data/mimic_subset/91.jpg b/data/mimic_subset/91.jpg index fd78e4cc63e71fabfe23847c005544eeba12494b..ceadd59812650db317185164d86ad670fa63f375 100644 --- a/data/mimic_subset/91.jpg +++ b/data/mimic_subset/91.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:bc72c16c4da5d00044a9a6eb3bd30c50e96e57ef598ecfe64d3e6b291a908273 -size 1526635 +oid sha256:2f7117395b3e815d5853b95354603d4c41ec0384132a77d6c10edd2b0bec060b +size 1228446 diff --git a/data/mimic_subset/92.jpg b/data/mimic_subset/92.jpg index 84f60840b42d46624535522032193d904a74a1f6..a9696600eae5f9c8fafc4e9bb00776678862751b 100644 --- a/data/mimic_subset/92.jpg +++ b/data/mimic_subset/92.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:8d0ee5913c80f9affd456ca68f0cb88ff1f0f5557aeca4c0705f63df5f820ad4 -size 1656681 +oid sha256:747ba3477e215174e939debb15cbe5760e99979f386a24dbb0988ea78ad45e99 +size 2200976 diff --git a/data/mimic_subset/97.jpg b/data/mimic_subset/97.jpg index 1786d05bf3a10077aa38cb98dd511d280bf3f26d..1006576815ab983370c49067ee33f19b26a3d6ac 100644 --- a/data/mimic_subset/97.jpg +++ b/data/mimic_subset/97.jpg @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:3a79427d2575de925c8ebbcd469a3709c9218dc02a752508866e8ec2af9d4ed4 -size 1864068 +oid sha256:8133847f297fcd503dc4f88bc582061bca334eee1bb29f21d0d47674094922df +size 1211649 diff --git a/datasets.py b/datasets.py index dfd881772d8c729441c78accf18893c072bb3019..a22f011b0cd69459637e6602736888deeb064ac3 100644 --- a/datasets.py +++ b/datasets.py @@ -336,8 +336,8 @@ class MIMICDataset(Dataset): self.transform = transform self.disease_labels = [ "No Finding", - "Consolidation", - "Lung Opacity", + "Pleural Effusion", + "Pneumonia", # "Lung Opacity", ] self.samples = { @@ -365,9 +365,9 @@ class MIMICDataset(Dataset): # finding = 0 if disease == "No Finding" else 1 if disease == "No Finding": finding = 0 - elif disease == "Consolidation": + elif disease == "Pleural Effusion": finding = 1 - elif disease == "Lung Opacity": + elif disease == "Pneumonia": finding = 2 else: finding = 0 diff --git a/pgm/__pycache__/flow_pgm.cpython-312.pyc b/pgm/__pycache__/flow_pgm.cpython-312.pyc new file mode 100644 index 0000000000000000000000000000000000000000..4871cd005ac54086a3f4f72306e7faaebcb784ce Binary files /dev/null and b/pgm/__pycache__/flow_pgm.cpython-312.pyc differ diff --git a/pgm/__pycache__/layers.cpython-312.pyc b/pgm/__pycache__/layers.cpython-312.pyc new file mode 100644 index 0000000000000000000000000000000000000000..8520e7fcd63c25fd4952e1437cb2eafd71648041 Binary files /dev/null and b/pgm/__pycache__/layers.cpython-312.pyc differ diff --git a/pgm/layers.py b/pgm/layers.py index 8412cdec5667ac6b0eab9e4ab457a487af5635dd..42c291b9eeabde44a1085120a8956dd1a9be1e38 100644 --- a/pgm/layers.py +++ b/pgm/layers.py @@ -174,7 +174,7 @@ class ArgMaxGumbelMax(Transform): def sample_gumbel(shape, eps=1e-20): U = torch.rand(shape) - # U = U.cuda() + U = U.to(torch.device('cuda:1')) return -torch.log(-torch.log(U + eps) + eps) def gumbel_softmax_sample(logits, temperature): y = logits + sample_gumbel(logits.shape)