modular_graph_and_candidates.py

#!/usr/bin/env python
"""
modular_graph_and_candidates.py
================================
Create **one** rich view that combines
1.  The *dependency graph* between existing **modular_*.py** implementations in
    🤗 Transformers (blue/🟡) **and**
2.  The list of *missing* modular models (full‑red nodes) **plus** similarity
    edges (full‑red links) between highly‑overlapping modelling files – the
    output of *find_modular_candidates.py* – so you can immediately spot good
    refactor opportunities.

––– Usage –––

```bash
python modular_graph_and_candidates.py /path/to/transformers \
       --multimodal         # keep only models whose modelling code mentions
                            # "pixel_values" ≥ 3 times
       --sim-threshold 0.5  # Jaccard cutoff (default 0.50)
       --out graph.html     # output HTML file name
```

Colour legend in the generated HTML:
* 🟡 **base model** — has modular shards *imported* by others but no parent
* 🔵 **derived modular model** — has a `modular_*.py` and inherits from ≥ 1 model
* 🔴 **candidate** — no `modular_*.py` yet (and/or very similar to another)
  * red edges = high‑Jaccard similarity links (potential to factorise)
"""
from __future__ import annotations

import argparse
import ast
import json
import re
import tokenize
from collections import Counter, defaultdict
from itertools import combinations
from pathlib import Path
from typing import Dict, List, Set, Tuple
from sentence_transformers import SentenceTransformer, util
from tqdm import tqdm
import numpy as np
import spaces
import torch

# ────────────────────────────────────────────────────────────────────────────────
# CONFIG
# ───────────────────────────────────────────────────────────────────────────────
SIM_DEFAULT     = 0.5   # similarity threshold
PIXEL_MIN_HITS  = 0      # multimodal trigger ("pixel_values")
HTML_DEFAULT = "d3_modular_graph.html"

# ────────────────────────────────────────────────────────────────────────────────
# 1)  Helpers to analyse *modelling* files (for similarity & multimodal filter)
# ────────────────────────────────────────────────────────────────────────────────

def _strip_source(code: str) -> str:
    """Remove doc‑strings, comments and import lines to keep only the core code."""
    code = re.sub(r'("""|\'\'\')(?:.|\n)*?\1', "", code)      # doc‑strings
    code = re.sub(r"#.*", "", code)                               # # comments
    return "\n".join(ln for ln in code.splitlines()
                     if not re.match(r"\s*(from|import)\s+", ln))

def _tokenise(code: str) -> Set[str]:
    """Extract identifiers using regex - more robust than tokenizer for malformed code."""
    toks: Set[str] = set()
    for match in re.finditer(r'\b[a-zA-Z_][a-zA-Z0-9_]*\b', code):
        toks.add(match.group())
    return toks

def build_token_bags(models_root: Path) -> Tuple[Dict[str, List[Set[str]]], Dict[str, int]]:
    """Return token‑bags of every `modeling_*.py` plus a pixel‑value counter."""
    bags: Dict[str, List[Set[str]]] = defaultdict(list)
    pixel_hits: Dict[str, int] = defaultdict(int)
    for mdl_dir in sorted(p for p in models_root.iterdir() if p.is_dir()):
        for py in mdl_dir.rglob("modeling_*.py"):
            try:
                text = py.read_text(encoding="utf‑8")
                pixel_hits[mdl_dir.name] += text.count("pixel_values")
                bags[mdl_dir.name].append(_tokenise(_strip_source(text)))
            except Exception as e:
                print(f"⚠️  Skipped {py}: {e}")
    return bags, pixel_hits

def _jaccard(a: Set[str], b: Set[str]) -> float:
    return 0.0 if (not a or not b) else len(a & b) / len(a | b)

def similarity_clusters(bags: Dict[str, List[Set[str]]], thr: float) -> Dict[Tuple[str,str], float]:
    """Return {(modelA, modelB): score} for pairs with Jaccard ≥ *thr*."""
    largest = {m: max(ts, key=len) for m, ts in bags.items() if ts}
    out: Dict[Tuple[str,str], float] = {}
    for m1, m2 in combinations(sorted(largest.keys()), 2):
        s = _jaccard(largest[m1], largest[m2])
        if s >= thr:
            out[(m1, m2)] = s
    return out

@spaces.GPU
def embedding_similarity_clusters(models_root: Path, missing: List[str], thr: float) -> Dict[Tuple[str, str], float]:
    model = SentenceTransformer("codesage/codesage-large-v2", device="cuda", trust_remote_code=True)

    try:
        cfg = model[0].auto_model.config
        pos_limit = int(getattr(cfg, "n_positions", getattr(cfg, "max_position_embeddings")))
    except Exception:
        pos_limit = 1024

    seq_len = min(pos_limit, 2048)
    model.max_seq_length = seq_len
    model[0].max_seq_length = seq_len 
    model[0].tokenizer.model_max_length = seq_len

    texts = {}
    for name in tqdm(missing, desc="Reading modeling files"):
        if any(skip in name.lower() for skip in ["mobilebert", "lxmert"]):
            print(f"Skipping {name} (causes GPU abort)")
            continue

        code = ""
        for py in (models_root / name).rglob("modeling_*.py"):
            try:
                code += _strip_source(py.read_text(encoding="utf-8")) + "\n"
            except Exception:
                continue
        texts[name] = code.strip() or " "

    names = list(texts)
    all_embeddings = []

    print(f"Encoding embeddings for {len(names)} models...")
    batch_size = 4  # keep your default

    # ── two-stage caching: temp (for resume) + permanent (for reuse) ─────────────
    temp_cache_path = Path("temp_embeddings.npz")  # For resuming computation
    final_cache_path = Path("embeddings_cache.npz")  # For permanent storage
    start_idx = 0
    emb_dim = getattr(model, "get_sentence_embedding_dimension", lambda: 768)()

    # Try to load from permanent cache first
    if final_cache_path.exists():
        try:
            cached = np.load(final_cache_path, allow_pickle=True)
            cached_names = list(cached["names"])
            if names == cached_names:  # Exact match - use final cache
                print(f"✅ Using final embeddings cache ({len(cached_names)} models)")
                return compute_similarities_from_cache(thr)
        except Exception as e:
            print(f"⚠️  Failed to load final cache: {e}")

    # Try to resume from temp cache
    if temp_cache_path.exists():
        try:
            cached = np.load(temp_cache_path, allow_pickle=True)
            cached_names = list(cached["names"])
            if names[:len(cached_names)] == cached_names:
                loaded = cached["embeddings"].astype(np.float32)
                all_embeddings.append(loaded)
                start_idx = len(cached_names)
                print(f"🔄 Resuming from temp cache: {start_idx}/{len(names)} models")
        except Exception as e:
            print(f"⚠️  Failed to load temp cache: {e}")
    # ───────────────────────────────────────────────────────────────────────────

    for i in tqdm(range(start_idx, len(names), batch_size), desc="Batches", leave=False):
        batch_names = names[i:i+batch_size]
        batch_texts = [texts[name] for name in batch_names]

        try:
            print(f"Processing batch: {batch_names}")
            emb = model.encode(batch_texts, convert_to_numpy=True, show_progress_bar=False)
        except Exception as e:
            print(f"⚠️  GPU worker error for batch {batch_names}: {type(e).__name__}: {e}")
            emb = np.zeros((len(batch_names), emb_dim), dtype=np.float32)

        all_embeddings.append(emb)

        # save to temp cache after each batch (for resume)
        try:
            cur = np.vstack(all_embeddings).astype(np.float32)
            np.savez(
                temp_cache_path,
                embeddings=cur,
                names=np.array(names[:i+len(batch_names)], dtype=object),
            )
        except Exception as e:
            print(f"⚠️  Failed to write temp cache: {e}")

        if (i - start_idx) % (3 * batch_size) == 0 and torch.cuda.is_available():
            torch.cuda.empty_cache()
            torch.cuda.synchronize()
            print(f"🧹 Cleared GPU cache after batch {(i - start_idx)//batch_size + 1}")

    embeddings = np.vstack(all_embeddings).astype(np.float32)
    norms = np.linalg.norm(embeddings, axis=1, keepdims=True) + 1e-12
    embeddings = embeddings / norms

    print("Computing pairwise similarities...")
    sims_mat = embeddings @ embeddings.T

    out = {}
    matrix_size = embeddings.shape[0]
    processed_names = names[:matrix_size]
    for i in range(matrix_size):
        for j in range(i + 1, matrix_size):
            s = float(sims_mat[i, j])
            if s >= thr:
                out[(processed_names[i], processed_names[j])] = s

    # Save to final cache when complete
    try:
        np.savez(final_cache_path, embeddings=embeddings, names=np.array(names, dtype=object))
        print(f"💾 Final embeddings saved to {final_cache_path}")
        # Clean up temp cache
        if temp_cache_path.exists():
            temp_cache_path.unlink()
            print(f"🧹 Cleaned up temp cache")
    except Exception as e:
        print(f"⚠️ Failed to save final cache: {e}")
    
    return out

def compute_similarities_from_cache(threshold: float) -> Dict[Tuple[str, str], float]:
    """Compute similarities from cached embeddings without reprocessing."""
    embeddings_path = Path("embeddings_cache.npz")
    
    if not embeddings_path.exists():
        return {}
    
    try:
        cached = np.load(embeddings_path, allow_pickle=True)
        embeddings = cached["embeddings"].astype(np.float32)
        names = list(cached["names"])
        
        # Normalize embeddings
        norms = np.linalg.norm(embeddings, axis=1, keepdims=True) + 1e-12
        embeddings = embeddings / norms
        
        # Compute similarities
        sims_mat = embeddings @ embeddings.T
        
        out = {}
        for i in range(len(names)):
            for j in range(i + 1, len(names)):
                s = float(sims_mat[i, j])
                if s >= threshold:
                    out[(names[i], names[j])] = s
        
        print(f"⚡ Computed {len(out)} similarities from cache (threshold: {threshold})")
        return out
        
    except Exception as e:
        print(f"⚠️  Failed to compute from cache: {e}")
        return {}





# ────────────────────────────────────────────────────────────────────────────────
# 2)  Scan *modular_*.py* files to build an import‑dependency graph
#     – only **modeling_*** imports are considered (skip configuration / processing)
# ────────────────────────────────────────────────────────────────────────────────

def modular_files(models_root: Path) -> List[Path]:
    return [p for p in models_root.rglob("modular_*.py") if p.suffix == ".py"]

def dependency_graph(modular_files: List[Path], models_root: Path) -> Dict[str, List[Dict[str,str]]]:
    """Return {derived_model: [{source, imported_class}, ...]}

    Only `modeling_*` imports are kept; anything coming from configuration/processing/
    image* utils is ignored so the visual graph focuses strictly on modelling code.
    Excludes edges to sources whose model name is not a model dir.
    """
    model_names = {p.name for p in models_root.iterdir() if p.is_dir()}
    deps: Dict[str, List[Dict[str,str]]] = defaultdict(list)
    for fp in modular_files:
        derived = fp.parent.name
        try:
            tree = ast.parse(fp.read_text(encoding="utf‑8"), filename=str(fp))
        except Exception as e:
            print(f"⚠️  AST parse failed for {fp}: {e}")
            continue
        for node in ast.walk(tree):
            if not isinstance(node, ast.ImportFrom) or not node.module:
                continue
            mod = node.module
            # keep only *modeling_* imports, drop anything else
            if ("modeling_" not in mod or
                "configuration_" in mod or
                "processing_" in mod or
                "image_processing" in mod or
                "modeling_attn_mask_utils" in mod):
                continue
            parts = re.split(r"[./]", mod)
            src = next((p for p in parts if p not in {"", "models", "transformers"}), "")
            if not src or src == derived or src not in model_names:
                continue
            for alias in node.names:
                deps[derived].append({"source": src, "imported_class": alias.name})
    return dict(deps)


# modular_graph_and_candidates.py (top-level)

def get_missing_models(models_root: Path, multimodal: bool = False) -> Tuple[List[str], Dict[str, List[Set[str]]], Dict[str, int]]:
    """Get list of models missing modular implementations."""
    bags, pix_hits = build_token_bags(models_root)
    mod_files = modular_files(models_root)
    models_with_modular = {p.parent.name for p in mod_files}
    missing = [m for m in bags if m not in models_with_modular]
    
    if multimodal:
        missing = [m for m in missing if pix_hits[m] >= PIXEL_MIN_HITS]
    
    return missing, bags, pix_hits

def compute_similarities(models_root: Path, missing: List[str], bags: Dict[str, List[Set[str]]], 
                        threshold: float, sim_method: str) -> Dict[Tuple[str, str], float]:
    """Compute similarities between missing models using specified method."""
    if sim_method == "jaccard":
        return similarity_clusters({m: bags[m] for m in missing}, threshold)
    else:
        # Try to use cached embeddings first
        embeddings_path = Path("embeddings_cache.npz")
        if embeddings_path.exists():
            cached_sims = compute_similarities_from_cache(threshold)
            if cached_sims:  # Cache exists and worked
                return cached_sims
        
        # Fallback to full computation
        return embedding_similarity_clusters(models_root, missing, threshold)

def build_graph_json(
    transformers_dir: Path,
    threshold: float = SIM_DEFAULT,
    multimodal: bool = False,
    sim_method: str = "jaccard",
) -> dict:
    """Return the {nodes, links} dict that D3 needs."""
    
    # Check if we can use cached embeddings only
    embeddings_cache = Path("embeddings_cache.npz")
    print(f"🔍 Cache file exists: {embeddings_cache.exists()}, sim_method: {sim_method}")
    
    if sim_method == "embedding" and embeddings_cache.exists():
        try:
            # Try to compute from cache without accessing repo
            cached_sims = compute_similarities_from_cache(threshold)
            print(f"🔍 Got {len(cached_sims)} cached similarities")
            
            if cached_sims:
                # Create graph with cached similarities + modular dependencies
                cached_data = np.load(embeddings_cache, allow_pickle=True)
                missing = list(cached_data["names"])
                
                # Still need to get modular dependencies from repo
                models_root = transformers_dir / "src/transformers/models"
                mod_files = modular_files(models_root)
                deps = dependency_graph(mod_files, models_root)
                
                # Build full graph structure
                nodes = set(missing)  # Start with cached models
                links = []
                
                # Add dependency links
                for drv, lst in deps.items():
                    for d in lst:
                        links.append({
                            "source": d["source"],
                            "target": drv,
                            "label": f"{sum(1 for x in lst if x['source'] == d['source'])} imports",
                            "cand": False
                        })
                        nodes.update({d["source"], drv})
                
                # Add similarity links
                for (a, b), s in cached_sims.items():
                    links.append({"source": a, "target": b, "label": f"{s*100:.1f}%", "cand": True})
                
                # Create node list with proper classification
                targets = {lk["target"] for lk in links if not lk["cand"]}
                sources = {lk["source"] for lk in links if not lk["cand"]}
                
                nodelist = []
                for n in sorted(nodes):
                    if n in missing and n not in sources and n not in targets:
                        cls = "cand"
                    elif n in sources and n not in targets:
                        cls = "base"
                    else:
                        cls = "derived"
                    nodelist.append({"id": n, "cls": cls, "sz": 1})
                
                print(f"⚡ Built graph from cache: {len(nodelist)} nodes, {len(links)} links")
                return {"nodes": nodelist, "links": links}
        except Exception as e:
            print(f"⚠️ Cache-only build failed: {e}, falling back to full build")
    
    # Full build with repository access
    models_root = transformers_dir / "src/transformers/models"
    
    # Get missing models and their data
    missing, bags, pix_hits = get_missing_models(models_root, multimodal)
    
    # Build dependency graph
    mod_files = modular_files(models_root)
    deps = dependency_graph(mod_files, models_root)
    
    # Compute similarities
    sims = compute_similarities(models_root, missing, bags, threshold, sim_method)

    # ---- assemble nodes & links ----
    nodes: Set[str] = set()
    links: List[dict] = []

    for drv, lst in deps.items():
        for d in lst:
            links.append({
                "source": d["source"],
                "target": drv,
                "label": f"{sum(1 for x in lst if x['source'] == d['source'])} imports",
                "cand": False
            })
            nodes.update({d["source"], drv})

    for (a, b), s in sims.items():
        links.append({"source": a, "target": b, "label": f"{s*100:.1f}%", "cand": True})
        nodes.update({a, b})

    nodes.update(missing)

    deg = Counter()
    for lk in links:
        deg[lk["source"]] += 1
        deg[lk["target"]] += 1
    max_deg = max(deg.values() or [1])

    targets = {lk["target"] for lk in links if not lk["cand"]}
    sources = {lk["source"] for lk in links if not lk["cand"]}
    missing_only = [m for m in missing if m not in sources and m not in targets]
    nodes.update(missing_only)

    nodelist = []
    for n in sorted(nodes):
        if n in missing_only:
            cls = "cand"
        elif n in sources and n not in targets:
            cls = "base"
        else:
            cls = "derived"
        nodelist.append({"id": n, "cls": cls, "sz": 1 + 2*(deg[n]/max_deg)})

    graph = {"nodes": nodelist, "links": links}    
    return graph


def generate_html(graph: dict) -> str:
    """Return the full HTML string with inlined CSS/JS + graph JSON."""
    js = JS.replace("__GRAPH_DATA__", json.dumps(graph, separators=(",", ":")))
    return HTML.replace("__CSS__", CSS).replace("__JS__", js)



# ────────────────────────────────────────────────────────────────────────────────
# 3)  HTML (D3.js) boilerplate – CSS + JS templates (unchanged design)
# ────────────────────────────────────────────────────────────────────────────────
CSS = """
@import url('https://fonts.googleapis.com/css2?family=Inter:wght@400;600&display=swap');

:root{
  --bg:#ffffff;
  --text:#222222;
  --muted:#555555;
  --outline:#ffffff;
}
@media (prefers-color-scheme: dark){
  :root{
    --bg:#0b0d10;
    --text:#e8e8e8;
    --muted:#c8c8c8;
    --outline:#000000;
  }
}

body{ margin:0; font-family:'Inter',Arial,sans-serif; background:var(--bg); overflow:hidden; }
svg{ width:100vw; height:100vh; }

.link{ stroke:#999; stroke-opacity:.6; }
.link.cand{ stroke:#e63946; stroke-width:2.5; }

.node-label{
  fill:var(--text);
  pointer-events:none;
  text-anchor:middle;
  font-weight:600;
  paint-order:stroke fill;
  stroke:var(--outline);
  stroke-width:3px;
}
.link-label{
  fill:var(--muted);
  pointer-events:none;
  text-anchor:middle;
  font-size:10px;
  paint-order:stroke fill;
  stroke:var(--bg);
  stroke-width:2px;
}

.node.base image{ width:60px; height:60px; transform:translate(-30px,-30px); }
.node.derived circle{ fill:#1f77b4; }
.node.cand circle, .node.cand path{ fill:#e63946; }

#legend{
  position:fixed; top:18px; left:18px;
  background:rgba(255,255,255,.92);
  padding:18px 28px; border-radius:10px; border:1.5px solid #bbb;
  font-size:18px; box-shadow:0 2px 8px rgba(0,0,0,.08);
}
@media (prefers-color-scheme: dark){
  #legend{ background:rgba(20,22,25,.92); color:#e8e8e8; border-color:#444; }
}
"""

JS = """
function updateVisibility() {
  const show = document.getElementById('toggleRed').checked;
  svg.selectAll('.link.cand').style('display', show ? null : 'none');
  svg.selectAll('.node.cand').style('display', show ? null : 'none');
  svg.selectAll('.link-label').filter(d => d.cand).style('display', show ? null : 'none');
}
document.getElementById('toggleRed').addEventListener('change', updateVisibility);

const HF_LOGO_URI = "./static/hf-logo.png";
const graph = __GRAPH_DATA__;
const W = innerWidth, H = innerHeight;
const svg = d3.select('#dependency').call(d3.zoom().on('zoom', e => g.attr('transform', e.transform)));
const g = svg.append('g');

const link = g.selectAll('line')
  .data(graph.links)
  .join('line')
  .attr('class', d => d.cand ? 'link cand' : 'link');

const linkLbl = g.selectAll('text.link-label')
  .data(graph.links)
  .join('text')
  .attr('class', 'link-label')
  .text(d => d.label);

const node = g.selectAll('g.node')
  .data(graph.nodes)
  .join('g')
  .attr('class', d => `node ${d.cls}`)
  .call(d3.drag().on('start', dragStart).on('drag', dragged).on('end', dragEnd));

const baseSel = node.filter(d => d.cls === 'base');
if (HF_LOGO_URI){
  baseSel.append('image')
    .attr('href', HF_LOGO_URI)
    .attr('width', 40)
    .attr('height', 40)
    .attr('x', -20)
    .attr('y', -20)
    .on('error', function() {
      console.log('Image failed to load:', HF_LOGO_URI);
      // Fallback to circle
      d3.select(this.parentNode).append('circle')
        .attr('r', 22).attr('fill', '#ffbe0b');
    });
  console.log('Loading logo from:', HF_LOGO_URI);
}else{
  baseSel.append('circle').attr('r', d => 22*d.sz).attr('fill', '#ffbe0b');
}
node.filter(d => d.cls !== 'base').append('circle').attr('r', d => 20*d.sz);

node.append('text')
  .attr('class','node-label')
  .attr('dy','-2.4em')
  .style('font-size', d => d.cls === 'base' ? '32px' : '28px')
  .style('font-weight', d => d.cls === 'base' ? 'bold' : 'normal')
  .text(d => d.id);

const sim = d3.forceSimulation(graph.nodes)
  .force('link', d3.forceLink(graph.links).id(d => d.id).distance(520))
  .force('charge', d3.forceManyBody().strength(-600))
  .force('center', d3.forceCenter(W / 2, H / 2))
  .force('collide', d3.forceCollide(d => 50));

sim.on('tick', () => {
  link.attr('x1', d=>d.source.x).attr('y1', d=>d.source.y)
      .attr('x2', d=>d.target.x).attr('y2', d=>d.target.y);
  linkLbl.attr('x', d=> (d.source.x+d.target.x)/2)
         .attr('y', d=> (d.source.y+d.target.y)/2);
  node.attr('transform', d=>`translate(${d.x},${d.y})`);
});

function dragStart(e,d){ if(!e.active) sim.alphaTarget(.3).restart(); d.fx=d.x; d.fy=d.y; }
function dragged(e,d){ d.fx=e.x; d.fy=e.y; }
function dragEnd(e,d){ if(!e.active) sim.alphaTarget(0); d.fx=d.fy=null; }
"""

HTML = """
<!DOCTYPE html>
<html lang='en'><head><meta charset='UTF-8'>
<title>Transformers modular graph</title>
<style>__CSS__</style></head><body>
<div id='legend'>
  🟡 base<br>🔵 modular<br>🔴 candidate<br>red edge = high embedding similarity<br><br>
  <label><input type="checkbox" id="toggleRed" checked> Show candidates edges and nodes</label>
</div>
<svg id='dependency'></svg>
<script src='https://d3js.org/d3.v7.min.js'></script>
<script>__JS__</script></body></html>
"""

# ────────────────────────────────────────────────────────────────────────────────
# HTML writer
# ────────────────────────────────────────────────────────────────────────────────

def write_html(graph_data: dict, path: Path):
    path.write_text(generate_html(graph_data), encoding="utf-8")


# ────────────────────────────────────────────────────────────────────────────────
# MAIN
# ────────────────────────────────────────────────────────────────────────────────

def main():
    ap = argparse.ArgumentParser(description="Visualise modular dependencies + candidates")
    ap.add_argument("transformers", help="Path to local 🤗 transformers repo root")
    ap.add_argument("--multimodal", action="store_true", help="filter to models with ≥3 'pixel_values'")
    ap.add_argument("--sim-threshold", type=float, default=SIM_DEFAULT)
    ap.add_argument("--out", default=HTML_DEFAULT)
    ap.add_argument("--sim-method", choices=["jaccard", "embedding"], default="jaccard",
                help="Similarity method: 'jaccard' or 'embedding'")
    args = ap.parse_args()

    graph = build_graph_json(
        transformers_dir=Path(args.transformers).expanduser().resolve(),
        threshold=args.sim_threshold,
        multimodal=args.multimodal,
        sim_method=args.sim_method,
    )
    write_html(graph, Path(args.out).expanduser())

if __name__ == "__main__":
    main()