Datasets:
Commit
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Parent(s):
feat: initial dataset release
Browse files- .gitattributes +59 -0
- README.md +110 -0
- dedup/train-00000-of-00001.parquet +3 -0
- original/train-00000-of-00001.parquet +3 -0
.gitattributes
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README.md
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---
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dataset_info:
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- config_name: dedup
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features:
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- name: text
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dtype: string
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- name: source
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dtype: string
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splits:
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- name: train
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num_bytes: 85241511
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num_examples: 30844
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download_size: 48607995
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dataset_size: 85241511
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- config_name: original
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features:
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- name: text
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dtype: string
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- name: source
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dtype: string
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splits:
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- name: train
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num_bytes: 105400009
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num_examples: 35996
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download_size: 60150578
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dataset_size: 105400009
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configs:
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- config_name: dedup
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data_files:
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- split: train
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path: dedup/train-*
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- config_name: original
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data_files:
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- split: train
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path: original/train-*
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default: true
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license: mit
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task_categories:
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- text-generation
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- mask-generation
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language:
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- es
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tags:
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- Clinical
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- Spanish
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size_categories:
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- 10K<n<100K
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---
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# ClinText-SP Dataset Card
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## Dataset Description
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**ClinText-SP** is the largest publicly available Spanish clinical corpus designed to support research in clinical natural language processing. It aggregates a rich collection of clinical texts from diverse open sources, including medical journals, annotated corpora from shared tasks, and supplementary sources like Wikipedia and medical textbooks.
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The dataset contains:
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- **35,996 samples** with an average of ~700 tokens per sample
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- **Approximately 25.62M tokens** in total
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ClinText-SP offers a balanced mix of long, well-structured clinical case reports and shorter, schematic texts, making it ideal for a variety of clinical NLP tasks.
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## Data Sources
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The corpus is built from three primary source types:
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- **Medical Journals:** Clinical case reports from specialized Spanish-language journals.
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- **Annotated Corpora:** Datasets from shared tasks.
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- **Other Sources:** Additional clinical knowledge extracted from Wikipedia and select medical textbooks to complement the dataset.
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## Data Preprocessing
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- **Cleaning & Extraction:** Texts were parsed and cleaned from PDFs, HTMLs, and other formats. Extraneous formatting, HTML artifacts, and non-essential metadata (e.g., author names) were removed.
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- **Customized Strategies:** Specific regex-based heuristics and LLM-assisted methods (using Qwen2.5) were employed to accurately extract clinical case information.
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- **Deduplication & Language Filtering:** Fuzzy deduplication (using MinHash) ensured unique entries, and non-Spanish texts were removed using Python Langdetect.
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## Intended Use
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ClinText-SP is ideal for:
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- **Training and Benchmarking:** Facilitating the development of Spanish clinical NLP models, including encoder-based models such as [RigoBERTa Clinical](https://huggingface.co/IIC/RigoBERTa-Clinical).
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- **Domain-Adaptive Pretraining:** Serving as a robust resource for adapting language models to the clinical domain.
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- **Research and Application:** Advancing clinical language understanding and supporting applications in healthcare AI.
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## Limitations and Biases
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- **Biases:** The dataset may reflect biases inherent to the selected sources and may not cover every clinical specialty.
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- **Coverage:** While comprehensive, the dataset might not fully encapsulate the entirety of clinical nuances across all medical fields.
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- **Data Quality:** Variations in data quality exist due to the diversity of sources and extraction methods.
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For more detailed information, please check the [original paper](https://arxiv.org/abs/2503.18594).
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## Citation
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If you use ClinText-SP in your research, please cite the work as follows:
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**BibTeX:**
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```bibtex
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@misc{subies2025clintextsprigobertaclinicalnew,
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title={ClinText-SP and RigoBERTa Clinical: a new set of open resources for Spanish Clinical NLP},
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author={Guillem García Subies and Álvaro Barbero Jiménez and Paloma Martínez Fernández},
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year={2025},
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eprint={2503.18594},
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archivePrefix={arXiv},
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primaryClass={cs.CL},
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url={https://arxiv.org/abs/2503.18594},
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}
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```
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**APA:**
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```
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Subies, G. G., Barbero Jiménez, Á., & Martínez Fernández, P. (2025). ClinText-SP and RigoBERTa Clinical: A new set of open resources for Spanish Clinical NLP. arXiv. https://arxiv.org/abs/2503.18594
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```
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## Model Card Authors and Contact
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Guillem García Subies: guillem.garcia@iic.uam.es, 100500844@alumnos.uc3m.es
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dedup/train-00000-of-00001.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:fa36b9ac218309fa6bacb062a344fbcbfea1360abac5d29b40f0f8b1866d41a8
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size 48607995
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original/train-00000-of-00001.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:ec52e7d8fbbf5149d86d0fff99a36f074ae113a2e0c83fafd8f223cc98143d25
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size 60150578
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